Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Reverse (-)

57309681 .. 57316280

Gene Structure 6600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCTGGCGACGGAACCTACGCCGATGATGGTGATCGATGAGGCCGAACTCCGGTTAGACTCCACTCTCGCCTACTTGAAGACGTTCACCTTTGCTTCTGCATACAAGTACTGTATGGTTGATTTGATTGAAATTGAAGCCTTCATGCCTAGAATCACGACTGGTACATCCTTTACAGTAGAGAGCATGTGCGACTTTACTGAAGCAGAACATATGCACAAGATTTCTGCTGATGAAGTAGCAGACAAATGTACTAAAGACGATGGAAGAGAAGAAAATGTGAAAAATGCAACTGGCACATCCATGGCAATTAAGTGGCAGAAGTTGGATGGAGGGAGATCTAGACAGATTCTTAGTCCCAAAACCCAAACATTGCCACACATTCCCTTAACGGGTTATACCACAGGCATGCACCCTTCAACTGCTATTAAAACTCAAAAAGAGGACATAAAGCTCACCGCCGCCGCTACAGCCGCGCCGCCTTGCAAGGCCACCACACACAGTGCGCAAGGACCATACGAAGCTAATGGAAGAAGTTTGGTGGAGATTGATGGCCGGAGGAGGAAGATATGGCCAACTGAAAATTGGGGGCGATTTCCCGAGCTGCTGCAGGAGCCTGAATTTGAATCATTCAAGCGTGTCCGGTCAGTAAGAGTAAAGAGTACTGCTGAGCTTAAAGAAGAGATGATGGCCAAAATTCCAAAGTTTAAGGCTCGACCAGTAAACAAAAAGATTCTTGAAGTGCCATCATTACCTGCAATTTCAAGAAGTACGCCACAGCCACCTGATTTTCAGAATAAACAATGGAAACCCCATCATCTTACTGAACCAAAAACTCCAGTGCTACATACATTATTGAGGGCCAGTCCACCCAGGGTGAAGAATTCTGTGGAAATTGAGCAGGAAGAACTTGAAAAGATCCCAAAATTCAAGGAGAAGCCTCTGGATACCAAACCTTTCATGCACAGAGCAGAATTTGATCACAAGGTTAAGGAGAAAGAGATAATGTATAAGAGATATAGAGAAGAGAGTGAAGCAGCAAGATGTCAGAGGAAAAGAAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

355

Amino Acids

40.69

Weight (kDa)

9.19

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2_importin	PF12214	204 - 266	2.7e-16	Cell cycle regulated microtubule associated protein
TPX2_importin	PF12214	273 - 319	6.1e-10	Cell cycle regulated microtubule associated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	507
Acc36I	ACCTGC	1 cut(s)	763
AccII	CGCG	1 cut(s)	476
AciI	CCGC	5 cut(s)	459, 462, 465, 474, 479
AclWI	GGATC	1 cut(s)	913
AcoI	YGGCCR	3 cut(s)	553, 572, 690
AcsI	RAATTY	5 cut(s)	620, 696, 883, 926, 974
AcuI	CTGAAG	1 cut(s)	222
AdeI	CACNNNGTG	1 cut(s)	503
AfaI	GTAC	5 cut(s)	110, 166, 253, 664, 772
AfiI	CCNNNNNNNGG	2 cut(s)	51, 392
AjnI	CCWGG	1 cut(s)	872
AluBI	AGCT	4 cut(s)	454, 524, 604, 673
AluI	AGCT	4 cut(s)	454, 524, 604, 673
AlwI	GGATC	1 cut(s)	913
Ama87I	CYCGRG	1 cut(s)	599
AoxI	GGCC	6 cut(s)	42, 489, 553, 572, 690, 861
ApeKI	GCWGC	3 cut(s)	604, 607, 1037
ApoI	RAATTY	5 cut(s)	620, 696, 883, 926, 974
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	478, 508
AspS9I	GGNCC	2 cut(s)	512, 861
AsuHPI	GGTGA	4 cut(s)	43, 79, 448, 889
AvaI	CYCGRG	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	512
BalI	TGGCCA	2 cut(s)	574, 692
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	591, 594, 1049
BccI	CCATC	7 cut(s)	22, 257, 323, 545, 682, 754, 822
BciT130I	CCWGG	1 cut(s)	874
BciVI	GTATCC	1 cut(s)	940
BclI	TGATCA	1 cut(s)	979
BfaI	CTAG	2 cut(s)	150, 342
BfmI	CTRYAG	2 cut(s)	468, 608
BfuAI	ACCTGC	1 cut(s)	763
BfuI	GTATCC	1 cut(s)	940
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	7 cut(s)	462, 465, 474, 479, 605, 608, 1038
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	7 cut(s)	463, 466, 475, 480, 606, 609, 1039
BmcAI	AGTACT	2 cut(s)	110, 664
Bme1390I	CCNGG	1 cut(s)	874
Bme18I	GGWCC	1 cut(s)	512
BmeT110I	CYCGRG	1 cut(s)	599
BmgT120I	GGNCC	2 cut(s)	512, 861
BmiI	GGNNCC	2 cut(s)	15, 615
BmrFI	CCNGG	1 cut(s)	874
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	822
Bpu1102I	GCTNAGC	1 cut(s)	669
Bsa29I	ATCGAT	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	303, 872, 873
BsaWI	WCCGGW	2 cut(s)	51, 642
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 392
Bse1I	ACTGG	5 cut(s)	166, 298, 719, 839, 864
Bse3DI	GCAATG	1 cut(s)	371
Bse8I	GATNNNNATC	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	874
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	303, 872, 873
BseGI	GGATG	3 cut(s)	167, 299, 334
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	51, 392
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	5 cut(s)	166, 298, 719, 839, 864
BseRI	GAGGAG	1 cut(s)	574
BseXI	GCAGC	3 cut(s)	591, 594, 1049
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	6 cut(s)	44, 491, 555, 574, 692, 863
BshVI	ATCGAT	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	3 cut(s)	52, 556, 643
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	51, 392
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	6 cut(s)	44, 491, 555, 574, 692, 863
BsoBI	CYCGRG	1 cut(s)	599
Bsp143I	GATC	4 cut(s)	33, 338, 918, 979
Bsp1720I	GCTNAGC	1 cut(s)	669
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	5 cut(s)	459, 462, 465, 474, 479
BspANI	GGCC	6 cut(s)	44, 491, 555, 574, 692, 863
BspCNI	CTCAG	1 cut(s)	661
BspDI	ATCGAT	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	476
BspLI	GGNNCC	2 cut(s)	15, 615
BspMAI	CTGCAG	1 cut(s)	612
BspMI	ACCTGC	1 cut(s)	763
BspPI	GGATC	1 cut(s)	913
BsrDI	GCAATG	1 cut(s)	371
BsrI	ACTGG	5 cut(s)	166, 298, 719, 839, 864
BssECI	CCNNGG	3 cut(s)	303, 872, 873
BssMI	GATC	4 cut(s)	33, 338, 918, 979
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	874
Bst4CI	ACNGT	3 cut(s)	113, 178, 503
Bst6I	CTCTTC	3 cut(s)	262, 675, 1020
BstC8I	GCNNGC	2 cut(s)	6, 410
BstDEI	CTNAG	2 cut(s)	353, 669
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	3 cut(s)	167, 299, 334
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	2 cut(s)	478, 508
BstKTI	GATC	4 cut(s)	36, 341, 921, 982
BstMBI	GATC	4 cut(s)	33, 338, 918, 979
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 473, 613
BstNI	CCWGG	1 cut(s)	874
BstNSI	RCATGY	2 cut(s)	190, 412
BstSCI	CCNGG	1 cut(s)	872
BstSFI	CTRYAG	2 cut(s)	468, 608
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	591, 594, 1049
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	2 cut(s)	338, 918
BstYI	RGATCY	2 cut(s)	338, 918
Bsu15I	ATCGAT	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	940
BsuRI	GGCC	6 cut(s)	44, 491, 555, 574, 692, 863
BsuTUI	ATCGAT	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	167, 299, 334
BtsIMutI	CAGTG	2 cut(s)	508, 846
BveI	ACCTGC	1 cut(s)	763
Cac8I	GCNNGC	2 cut(s)	6, 410
CfoI	GCGC	2 cut(s)	478, 508
Cfr13I	GGNCC	2 cut(s)	512, 861
ClaI	ATCGAT	1 cut(s)	36
Csp6I	GTAC	5 cut(s)	109, 165, 252, 663, 771
CviAII	CATG	5 cut(s)	145, 187, 304, 409, 961
CviQI	GTAC	5 cut(s)	109, 165, 252, 663, 771
DdeI	CTNAG	2 cut(s)	353, 669
DpnI	GATC	4 cut(s)	35, 340, 920, 981
DpnII	GATC	4 cut(s)	33, 338, 918, 979
DraIII	CACNNNGTG	1 cut(s)	503
EaeI	YGGCCR	3 cut(s)	553, 572, 690
Eam1104I	CTCTTC	3 cut(s)	262, 675, 1020
EarI	CTCTTC	3 cut(s)	262, 675, 1020
Eco130I	CCWWGG	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	883
EcoRII	CCWGG	1 cut(s)	872
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	5 cut(s)	148, 190, 307, 412, 964
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	5 cut(s)	144, 186, 303, 408, 960
FauNDI	CATATG	1 cut(s)	213
FbaI	TGATCA	1 cut(s)	979
Fnu4HI	GCNGC	7 cut(s)	462, 465, 474, 479, 605, 608, 1038
FokI	GGATG	3 cut(s)	154, 286, 341
Fsp4HI	GCNGC	7 cut(s)	462, 465, 474, 479, 605, 608, 1038
FspBI	CTAG	2 cut(s)	150, 342
FspI	TGCGCA	1 cut(s)	507
GlaI	GCGC	2 cut(s)	477, 507
GluI	GCNGC	7 cut(s)	462, 465, 474, 479, 605, 608, 1038
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	6 cut(s)	44, 491, 555, 574, 692, 863
HapII	CCGG	3 cut(s)	52, 556, 643
HhaI	GCGC	2 cut(s)	478, 508
Hin1II	CATG	5 cut(s)	148, 190, 307, 412, 964
Hin6I	GCGC	2 cut(s)	476, 506
HinP1I	GCGC	2 cut(s)	476, 506
HinfI	GANTC	5 cut(s)	59, 153, 349, 626, 733
HpaII	CCGG	3 cut(s)	52, 556, 643
HphI	GGTGA	4 cut(s)	43, 79, 448, 889
Hpy166II	GTNNAC	3 cut(s)	87, 724, 869
Hpy188I	TCNGA	2 cut(s)	795, 1050
Hpy188III	TCNNGA	6 cut(s)	157, 342, 599, 737, 765, 944
Hpy8I	GTNNAC	3 cut(s)	87, 724, 869
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	151, 426
HpyCH4III	ACNGT	3 cut(s)	113, 178, 503
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	8 cut(s)	101, 217, 290, 412, 486, 610, 758, 964
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 473, 613
HpyF3I	CTNAG	2 cut(s)	353, 669
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	5 cut(s)	148, 190, 307, 412, 964
HspAI	GCGC	2 cut(s)	476, 506
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	4 cut(s)	33, 338, 918, 979
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	3 cut(s)	591, 594, 1049
MaeI	CTAG	2 cut(s)	150, 342
MaeII	ACGT	1 cut(s)	83
MalI	GATC	4 cut(s)	35, 340, 920, 981
MboI	GATC	4 cut(s)	33, 338, 918, 979
MboII	GAAGA	9 cut(s)	91, 279, 284, 543, 577, 692, 892, 917, 1037
MflI	RGATCY	2 cut(s)	338, 918
MlsI	TGGCCA	2 cut(s)	574, 692
MluNI	TGGCCA	2 cut(s)	574, 692
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	8 cut(s)	34, 326, 436, 552, 555, 852, 951, 1044
Mox20I	TGGCCA	2 cut(s)	574, 692
MroXI	GAANNNNTTC	1 cut(s)	83
MscI	TGGCCA	2 cut(s)	574, 692
MseI	TTAA	6 cut(s)	312, 389, 429, 675, 708, 990
MslI	CAYNNNNRTG	2 cut(s)	302, 407
Msp20I	TGGCCA	2 cut(s)	574, 692
MspI	CCGG	3 cut(s)	52, 556, 643
MspR9I	CCNGG	1 cut(s)	874
MvaI	CCWGG	1 cut(s)	874
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	3 cut(s)	470, 473, 613
NcoI	CCATGG	1 cut(s)	303
NdeI	CATATG	1 cut(s)	213
NdeII	GATC	4 cut(s)	33, 338, 918, 979
NlaIII	CATG	5 cut(s)	148, 190, 307, 412, 964
NlaIV	GGNNCC	2 cut(s)	15, 615
NsbI	TGCGCA	1 cut(s)	507
NspI	RCATGY	2 cut(s)	190, 412
PaeI	GCATGC	1 cut(s)	412
PasI	CCCWGGG	1 cut(s)	873
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	4 cut(s)	153, 349, 626, 733
PkrI	GCNGC	7 cut(s)	463, 466, 475, 480, 606, 609, 1039
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	872
PspGI	CCWGG	1 cut(s)	872
PspN4I	GGNNCC	2 cut(s)	15, 615
PspPI	GGNCC	2 cut(s)	512, 861
PstI	CTGCAG	1 cut(s)	612
PsuI	RGATCY	2 cut(s)	338, 918
RsaI	GTAC	5 cut(s)	110, 166, 253, 664, 772
RsaNI	GTAC	5 cut(s)	109, 165, 252, 663, 771
RseI	CAYNNNNRTG	2 cut(s)	302, 407
SaqAI	TTAA	6 cut(s)	312, 389, 429, 675, 708, 990
SatI	GCNGC	7 cut(s)	462, 465, 474, 479, 605, 608, 1038
Sau3AI	GATC	4 cut(s)	33, 338, 918, 979
Sau96I	GGNCC	2 cut(s)	512, 861
ScaI	AGTACT	2 cut(s)	110, 664
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	874
SfcI	CTRYAG	2 cut(s)	468, 608
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	2 cut(s)	302, 407
SphI	GCATGC	1 cut(s)	412
SsiI	CCGC	5 cut(s)	459, 462, 465, 474, 479
SspMI	CTAG	2 cut(s)	150, 342
StyD4I	CCNGG	1 cut(s)	872
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	113, 178, 503
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	36, 715
TatI	WGTACW	3 cut(s)	108, 251, 662
TauI	GCSGC	4 cut(s)	464, 467, 476, 481
TfiI	GAWTC	4 cut(s)	153, 349, 626, 733
Tru1I	TTAA	6 cut(s)	312, 389, 429, 675, 708, 990
Tru9I	TTAA	6 cut(s)	312, 389, 429, 675, 708, 990
TscAI	CASTG	2 cut(s)	508, 846
TseI	GCWGC	3 cut(s)	604, 607, 1037
TspDTI	ATGAA	3 cut(s)	133, 249, 949
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	508, 846
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	5 cut(s)	620, 696, 883, 926, 974
XbaI	TCTAGA	1 cut(s)	341
XceI	RCATGY	2 cut(s)	190, 412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	2 cut(s)	150, 342
ZrmI	AGTACT	2 cut(s)	110, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.