Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Reverse (-)

19726804 .. 19728433

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28561.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTCAGAAACCCATCAGGGCTAAGGGGAAAAAGTCACTTGCACTCTTCACATATTAAACCGTATACTATGAAAAGAGAAGAGAACGTGAAAAATGCAACTGGCACATCCATGTTAGCTCAGGAGAATCAGGCAATTAAGCGGCAGAAGTTGGATGGTGGAAGATATACACAGATTCTTAATCCCAAACCCCAAACATTGCTTCACAAGTCAAACTGGGTCATACCAGGGCCACACATTTTTCAACTGCTATTAAAACTCAAAAAGAGGACAGGATGGTTTATTTATGTTCGGGAACCTGCAGCACCATTTGTTTCAATGGCAGAAATGATGAACAGGTTCCAATCAAGTACCAGAGACTTGTCGCTGCCGCATGCTAATGGTTCTCTTTCACACATGAAGCCTAAACTCACCTTAACAAGACCAAAGGAGCCAGAATTTGAGACGTCACAGTGTGTGCGCTCAGTTAGAGTGAAGAGTACTGCTGAGCTGGAAGAAGAGATGATGGCCAAAATTCCAAAGTTCAAGGCTCGTCCAGTAAACAGGAAGATTCTTGAAGTACCCCACAGCCACCTGCATTTCAGGCATGAAATTTGGTGTTTGAATGCAAAGAGTGCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

208

Amino Acids

23.85

Weight (kDa)

10.34

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2_importin	PF12214	138 - 192	8e-19	Cell cycle regulated microtubule associated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	582
AatII	GACGTC	1 cut(s)	449
Acc36I	ACCTGC	2 cut(s)	307, 582
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	2 cut(s)	142, 371
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	3 cut(s)	437, 513, 591
AcyI	GRCGYC	1 cut(s)	446
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	3 cut(s)	352, 481, 561
AgsI	TTSAA	5 cut(s)	245, 318, 526, 557, 604
AjnI	CCWGG	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	2 cut(s)	119, 490
AluI	AGCT	2 cut(s)	119, 490
Alw26I	GTCTC	2 cut(s)	351, 437
AoxI	GGCC	2 cut(s)	230, 507
ApeKI	GCWGC	2 cut(s)	302, 367
ApoI	RAATTY	3 cut(s)	437, 513, 591
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	314, 354
BccI	CCATC	4 cut(s)	22, 149, 270, 499
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	2 cut(s)	351, 437
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	2 cut(s)	307, 582
BisI	GCNGC	4 cut(s)	143, 303, 368, 371
BlpI	GCTNAGC	1 cut(s)	486
BlsI	GCNGC	4 cut(s)	144, 304, 369, 372
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	3 cut(s)	297, 341, 432
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	226
Bpu10I	CCTNAGC	2 cut(s)	23, 120
Bpu1102I	GCTNAGC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	227
Bse1I	ACTGG	3 cut(s)	106, 221, 536
Bse3DI	GCAATG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	3 cut(s)	107, 160, 281
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	3 cut(s)	134, 477, 477
BseNI	ACTGG	3 cut(s)	106, 221, 536
BseXI	GCAGC	2 cut(s)	314, 354
BshFI	GGCC	2 cut(s)	232, 509
BsmAI	GTCTC	2 cut(s)	351, 437
BsmBI	CGTCTC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	232, 509
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	2 cut(s)	142, 371
BspANI	GGCC	2 cut(s)	232, 509
BspCNI	CTCAG	3 cut(s)	133, 476, 478
BspLI	GGNNCC	3 cut(s)	297, 341, 432
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	2 cut(s)	307, 582
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	3 cut(s)	106, 221, 536
BssECI	CCNNGG	1 cut(s)	227
BssNAI	GTATAC	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	446
Bst1107I	GTATAC	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	63, 453
Bst6I	CTCTTC	4 cut(s)	52, 75, 470, 492
BstACI	GRCGYC	1 cut(s)	446
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	4 cut(s)	23, 120, 463, 486
BstF5I	GGATG	3 cut(s)	107, 160, 281
BstHHI	GCGC	1 cut(s)	462
BstMAI	GTCTC	2 cut(s)	351, 437
BstMWI	GCNNNNNNNGC	2 cut(s)	583, 614
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	314, 354
BstZ17I	GTATAC	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	232, 509
BtsCI	GGATG	3 cut(s)	107, 160, 281
BtsIMutI	CAGTG	1 cut(s)	458
BveI	ACCTGC	2 cut(s)	307, 582
Cac8I	GCNNGC	1 cut(s)	375
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	3 cut(s)	351, 480, 560
CviAII	CATG	4 cut(s)	112, 374, 397, 587
CviJI	RGCY	9 cut(s)	22, 119, 232, 403, 433, 490, 509, 530, 570
CviKI_1	RGCY	9 cut(s)	22, 119, 232, 403, 433, 490, 509, 530, 570
CviQI	GTAC	3 cut(s)	351, 480, 560
DdeI	CTNAG	4 cut(s)	23, 120, 463, 486
DraIII	CACNNNGTG	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	4 cut(s)	52, 75, 470, 492
EarI	CTCTTC	4 cut(s)	52, 75, 470, 492
EcoRII	CCWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	4 cut(s)	115, 377, 400, 590
FatI	CATG	4 cut(s)	111, 373, 396, 586
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	4 cut(s)	143, 303, 368, 371
FokI	GGATG	3 cut(s)	94, 167, 288
Fsp4HI	GCNGC	4 cut(s)	143, 303, 368, 371
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	4 cut(s)	143, 303, 368, 371
HaeIII	GGCC	2 cut(s)	232, 509
HhaI	GCGC	1 cut(s)	462
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	4 cut(s)	115, 377, 400, 590
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HinfI	GANTC	3 cut(s)	127, 175, 550
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	2 cut(s)	66, 541
Hpy188I	TCNGA	1 cut(s)	8
Hpy188III	TCNNGA	3 cut(s)	122, 293, 554
Hpy8I	GTNNAC	2 cut(s)	66, 541
HpyCH4III	ACNGT	2 cut(s)	63, 453
HpyCH4IV	ACGT	2 cut(s)	87, 446
HpyCH4V	TGCA	6 cut(s)	43, 98, 302, 577, 608, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	583, 614
HpyF3I	CTNAG	4 cut(s)	23, 120, 463, 486
HpySE526I	ACGT	2 cut(s)	87, 446
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	4 cut(s)	115, 377, 400, 590
HspAI	GCGC	1 cut(s)	460
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	2 cut(s)	314, 354
MaeII	ACGT	2 cut(s)	87, 446
MaeIII	GTNAC	2 cut(s)	35, 447
MboII	GAAGA	7 cut(s)	39, 92, 174, 487, 506, 509, 559
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	4 cut(s)	135, 437, 513, 591
MluNI	TGGCCA	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	1 cut(s)	261
Mox20I	TGGCCA	1 cut(s)	509
MroXI	GAANNNNTTC	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	5 cut(s)	57, 138, 180, 254, 416
MslI	CAYNNNNRTG	2 cut(s)	110, 378
Msp20I	TGGCCA	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	583, 614
NlaIII	CATG	4 cut(s)	115, 377, 400, 590
NlaIV	GGNNCC	3 cut(s)	297, 341, 432
NmuCI	GTSAC	2 cut(s)	35, 447
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PaqCI	CACCTGC	1 cut(s)	582
PctI	GAATGC	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	127, 175, 550
PkrI	GCNGC	4 cut(s)	144, 304, 369, 372
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	297, 341, 432
PspPI	GGNCC	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	304
RsaI	GTAC	3 cut(s)	352, 481, 561
RsaNI	GTAC	3 cut(s)	351, 480, 560
RseI	CAYNNNNRTG	2 cut(s)	110, 378
SaqAI	TTAA	5 cut(s)	57, 138, 180, 254, 416
SatI	GCNGC	4 cut(s)	143, 303, 368, 371
Sau96I	GGNCC	1 cut(s)	230
ScaI	AGTACT	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	8 cut(s)	90, 121, 301, 341, 416, 449, 492, 576
SfcI	CTRYAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	110, 378
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	4 cut(s)	135, 437, 513, 591
SsiI	CCGC	2 cut(s)	142, 371
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	63, 453
TaiI	ACGT	2 cut(s)	90, 449
TasI	AATT	4 cut(s)	135, 437, 513, 591
TatI	WGTACW	1 cut(s)	479
TauI	GCSGC	2 cut(s)	145, 373
TfiI	GAWTC	3 cut(s)	127, 175, 550
Tru1I	TTAA	5 cut(s)	57, 138, 180, 254, 416
Tru9I	TTAA	5 cut(s)	57, 138, 180, 254, 416
TscAI	CASTG	1 cut(s)	458
TseFI	GTSAC	2 cut(s)	35, 447
TseI	GCWGC	2 cut(s)	302, 367
Tsp45I	GTSAC	2 cut(s)	35, 447
TspDTI	ATGAA	4 cut(s)	86, 347, 413, 603
TspRI	CASTG	1 cut(s)	458
XapI	RAATTY	3 cut(s)	437, 513, 591
XceI	RCATGY	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	338
ZraI	GACGTC	1 cut(s)	447
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.