Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Forward (+)

19556485 .. 19558464

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28401.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCCGGCGACGACGGAGGAGAAAGGCAATGACGGACACGAAGGCGCAAACCTCCATGATCGACGAGGTCTACGAATTCTGGGCGCCGCGATTCTTCGATTTTATGAAGGAGGAGAGCGACGCCGACAAGAACAAAGCCGAGCAGTTCGACTCCACTCCGCTCGCCCCTACGCCTCTTCCCCTTTCATGTCTAGAATCAAGACTGGTAGATCCTTTACAGTAGAGAGCATGTGCGACTTTACTGAAGCAGAACATATGCAGAAGAACCTTGAATCATCCTCTGATTTAAAAGCTGCTGATGAAACTAAGGCTGACTTGAAGATCACTCCTGAATTGAAGGAAGCTAAAGATGAAAACAGTGCAAGACAAGCCATTATAATTTCTGCTGATAAAGTAGAGGACAAATGCATGAAAGATGATGGAAGTGTTCTGGCTGCTGCGCAGTATCTTCCAATAAGAGAACTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

157

Amino Acids

17.42

Weight (kDa)

6.12

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
Acc16I	TGCGCA	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	70
AccII	CGCG	1 cut(s)	89
AciI	CCGC	2 cut(s)	87, 159
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	2 cut(s)	84, 121
AgsI	TTSAA	3 cut(s)	272, 319, 337
AluBI	AGCT	2 cut(s)	293, 344
AluI	AGCT	2 cut(s)	293, 344
AlwI	GGATC	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	293, 434, 437
ApoI	RAATTY	1 cut(s)	75
AspLEI	GCGC	3 cut(s)	47, 86, 442
BanI	GGYRCC	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	280, 421, 424
BccI	CCATC	1 cut(s)	413
BfaI	CTAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	4 cut(s)	87, 294, 435, 438
BlsI	GCNGC	4 cut(s)	88, 295, 436, 439
BmiI	GGNNCC	1 cut(s)	85
BsaHI	GRCGYC	2 cut(s)	84, 121
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	32, 126
BseXI	GCAGC	3 cut(s)	280, 421, 424
Bsh1236I	CGCG	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	58, 209, 321
BspACI	CCGC	2 cut(s)	87, 159
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	4
BssMI	GATC	3 cut(s)	58, 209, 321
BssNI	GRCGYC	2 cut(s)	84, 121
Bst4CI	ACNGT	2 cut(s)	220, 359
Bst6I	CTCTTC	1 cut(s)	181
BstACI	GRCGYC	2 cut(s)	84, 121
BstC8I	GCNNGC	2 cut(s)	6, 163
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	3 cut(s)	47, 86, 442
BstKTI	GATC	3 cut(s)	61, 212, 324
BstMBI	GATC	3 cut(s)	58, 209, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	232
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	280, 421, 424
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	6, 163
CfoI	GCGC	3 cut(s)	47, 86, 442
Cfr10I	RCCGGY	1 cut(s)	4
CseI	GACGC	1 cut(s)	129
CviAII	CATG	4 cut(s)	56, 187, 229, 409
CviJI	RGCY	6 cut(s)	138, 293, 311, 344, 371, 434
CviKI_1	RGCY	6 cut(s)	138, 293, 311, 344, 371, 434
DdeI	CTNAG	1 cut(s)	306
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	3 cut(s)	60, 211, 323
DpnII	GATC	3 cut(s)	58, 209, 321
DraI	TTTAAA	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	264
EcoRI	GAATTC	1 cut(s)	75
EcoT22I	ATGCAT	1 cut(s)	410
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
FaeI	CATG	4 cut(s)	59, 190, 232, 412
FaiI	YATR	9 cut(s)	57, 105, 188, 230, 255, 257, 377, 410, 469
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	4 cut(s)	55, 186, 228, 408
FauNDI	CATATG	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	4 cut(s)	87, 294, 435, 438
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	4 cut(s)	87, 294, 435, 438
FspBI	CTAG	1 cut(s)	192
FspI	TGCGCA	1 cut(s)	441
GlaI	GCGC	3 cut(s)	46, 85, 441
GluI	GCNGC	4 cut(s)	87, 294, 435, 438
HaeII	RGCGCY	1 cut(s)	87
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	3 cut(s)	47, 86, 442
Hin1I	GRCGYC	2 cut(s)	84, 121
Hin1II	CATG	4 cut(s)	59, 190, 232, 412
Hin6I	GCGC	3 cut(s)	45, 84, 440
HinP1I	GCGC	3 cut(s)	45, 84, 440
HinfI	GANTC	4 cut(s)	91, 150, 195, 272
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	3 cut(s)	192, 199, 329
Hpy8I	GTNNAC	1 cut(s)	71
Hpy99I	CGWCG	4 cut(s)	13, 16, 66, 123
HpyAV	CCTTC	3 cut(s)	35, 101, 331
HpyCH4III	ACNGT	2 cut(s)	220, 359
HpyCH4V	TGCA	3 cut(s)	259, 362, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	306
Hsp92I	GRCGYC	2 cut(s)	84, 121
Hsp92II	CATG	4 cut(s)	59, 190, 232, 412
HspAI	GCGC	3 cut(s)	45, 84, 440
KasI	GGCGCC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	58, 209, 321
LpnPI	CCDG	5 cut(s)	18, 65, 189, 342, 416
Lsp1109I	GCAGC	3 cut(s)	280, 421, 424
MaeI	CTAG	1 cut(s)	192
MalI	GATC	3 cut(s)	60, 211, 323
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	3 cut(s)	58, 209, 321
MboII	GAAGA	5 cut(s)	86, 168, 274, 331, 440
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	3 cut(s)	75, 332, 378
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	7 cut(s)	10, 59, 62, 104, 184, 289, 391
Mph1103I	ATGCAT	1 cut(s)	410
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	287
MspI	CCGG	1 cut(s)	5
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	368
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	84
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	3 cut(s)	58, 209, 321
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	59, 190, 232, 412
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	164
NsbI	TGCGCA	1 cut(s)	441
NsiI	ATGCAT	1 cut(s)	410
NspI	RCATGY	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	91, 195, 272
PflFI	GACNNNGTC	1 cut(s)	66
PkrI	GCNGC	4 cut(s)	88, 295, 436, 439
PleI	GAGTC	1 cut(s)	144
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	144
PsiI	TTATAA	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	4 cut(s)	87, 294, 435, 438
Sau3AI	GATC	3 cut(s)	58, 209, 321
SchI	GAGTC	1 cut(s)	144
SetI	ASST	5 cut(s)	54, 70, 270, 295, 346
SfoI	GGCGCC	1 cut(s)	85
Sse9I	AATT	3 cut(s)	75, 332, 378
SsiI	CCGC	2 cut(s)	87, 159
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	220, 359
TaqI	TCGA	3 cut(s)	61, 97, 148
TasI	AATT	3 cut(s)	75, 332, 378
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	3 cut(s)	91, 195, 272
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	3 cut(s)	293, 434, 437
TspDTI	ATGAA	5 cut(s)	120, 175, 315, 366, 425
TspGWI	ACGGA	2 cut(s)	29, 48
TspRI	CASTG	1 cut(s)	364
Tth111I	GACNNNGTC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	75
XbaI	TCTAGA	1 cut(s)	191
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	1 cut(s)	192
Zsp2I	ATGCAT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.