FvH4_6g25690

Cell cycle regulated microtubule associated protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
19668939 .. 19676024
7086 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25690.t1

Sequence Viewer

Length: 1578 bp
ATGCCTAGAATCAAGACTGGTAGATCCTTTACAGTAGAGAGCATGTGCGACTTTACTGAAGCAGAACATATGAAGAAGAACCTTGAATCATCCTCTGATTTAAAAGCTGCTGATGAAACCAAGGCTGACTTGAAGATCACTCCTGAGTTGAAGGAAGAAACAATTCCCAGGGAGGCTAAAGATGAAAACAGTGCAAGACAAGCCATTACGATTTCTGCTGATAAAGTAGAGGACAAATGCATGAAAGATGATGGAAGTGTTCTGGCTGCTGCAGTATCTTCCAATAAGAGAACTGATATAACTAATGAGAAGGAGAATAGTAATTCCATAGCTAGTACTCCAAAGCCACCCATGAATTATTCCAAGAAGGGAGATCTTCTAAGTGATTCCAAAAACCACCAGACAGCTAAAAAGATATCAAGCATGGTCAGAAACCCATCAGGGCTAAGGGGAAAAAGTCACTTGCACTCTTCACATATTAAACCAGAAGAGAACGTGAAAAATGCAACTGGCACATCCATGTTAGCTCAGGAGAATCAAGCAATCAAGCGGCAGAAGTCGGATGCTGGAAGATCTAGACAGATTCTTAATCCCAAACCCCAGACATTGCTCCACAAGTCAAAACTGGGTCATACCGGTGCCACACATTTTTCGACTGCTATTAAAACGCAAAAAGAGGACAGGACGATTTATGTTTGGGAACCTGCAGCACCATTTGTTTCAATGGCAGAAATGATGAACAGGTTCCAATCAAAGGTTGATGTTGTTTCTATTATTCAGATGAAGCCTAAACTCACCTTAACAAGACCAAAGGAGCCAGAATTTGAGACATCACAGCGTGTGCGCTTAGTTAGAGTGAAGCGTACTGCTGAGTTGGAAGAAGAGATGATGGCCAAAATTCCAAAGTTTAAGGCTCGTCCAGTAAACAAAAAGATTCTTGAAGCACCATCATTACCTGCAATGTCAAAAGAAGTACCCCACAGCGCATTTCAGATCTTGACGAAATTTGCAGCGTGTATCATCAGCAAGAACAGGGAAGGTAATTCTGGGTTTTCGGATTACAGAGCTGGTCTTAAATTGGATTGGGTCCGACTGGATATGAAAAGTGAAGGTTGGAAAGAGGTTAGAGCACAACAATATGTCAGAGGAATTGGTGTCACTGATCTATTGCCTCAGTCTTGCAATGCTGGCAATGCTGCTGCGAAGCTCTGGAGCTTAGTGGAAAGACGATCGCGTTTAGATCCTATAAATCTGCTCTGGAGCTTAGTGGAAAGACAATCGCGTTTAGATCCGATAAATCTGCTCTGGAGCTTAGTGGAAAGACAATCGCGTTTAGATCCGATAAATCTGATTGAAGGTGGTGCTCTGTGTGTGCGAGGCTGTAAGGGGGTTATATATTTTCAGGATCTTACGCCATCCAAGAAGCTCAACGTTTTCATCTGGAACAAATTCAGGCTAATAGGACTGGATGTAGATGATCAACCTCCTGTGACTTCAATTCCTGCTTTTACACGGTGTTGTCAAGAGCCTTCCGGTAATAATGCCAGGAGGATATCATTGTCTGGATTTGAGCTGTAA

Protein Analysis

526

Amino Acids

58.89

Weight (kDa)

9.56

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 266 - 328 4.6e-20 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 712, 964
AccB1I GGYRCC 1 cut(s) 638
AccII CGCG 3 cut(s) 1234, 1282, 1330
AciI CCGC 1 cut(s) 550
AclI AACGTT 1 cut(s) 1431
AclWI GGATC 5 cut(s) 18, 1235, 1283, 1331, 1413
AcoI YGGCCR 1 cut(s) 891
AcsI RAATTY 4 cut(s) 821, 897, 1004, 1448
AcuI CTGAAG 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 839
AfaI GTAC 3 cut(s) 337, 865, 975
AfiI CCNNNNNNNGG 1 cut(s) 754
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 7 cut(s) 86, 133, 151, 723, 941, 1355, 1497
AjnI CCWGG 2 cut(s) 167, 1544
Alw21I GWGCWC 2 cut(s) 1132, 1366
Alw26I GTCTC 1 cut(s) 821
AlwI GGATC 5 cut(s) 18, 1235, 1283, 1331, 1413
AoxI GGCC 1 cut(s) 891
ApeKI GCWGC 7 cut(s) 107, 266, 269, 707, 1010, 1196, 1199
ApoI RAATTY 4 cut(s) 821, 897, 1004, 1448
AsiGI ACCGGT 1 cut(s) 635
Asp700I GAANNNNTTC 3 cut(s) 162, 743, 1448
AspLEI GCGC 2 cut(s) 846, 986
AspS9I GGNCC 1 cut(s) 1087
AsuHPI GGTGA 1 cut(s) 787
AvaII GGWCC 1 cut(s) 1087
BalI TGGCCA 1 cut(s) 893
BanI GGYRCC 1 cut(s) 638
Bbv12I GWGCWC 2 cut(s) 1132, 1366
BbvI GCAGC 7 cut(s) 94, 253, 256, 719, 1022, 1183, 1186
BccI CCATC 5 cut(s) 245, 445, 883, 955, 1423
BcgI CGANNNNNNTGC 2 cut(s) 1282, 1316
BciT130I CCWGG 2 cut(s) 169, 1546
BclI TGATCA 1 cut(s) 1477
BcoDI GTCTC 1 cut(s) 821
BfaI CTAG 3 cut(s) 6, 333, 576
BfmI CTRYAG 2 cut(s) 270, 705
BfuAI ACCTGC 2 cut(s) 712, 964
BglII AGATCT 3 cut(s) 373, 572, 993
BisI GCNGC 8 cut(s) 108, 267, 270, 551, 708, 1011, 1197, 1200
BlsI GCNGC 8 cut(s) 109, 268, 271, 552, 709, 1012, 1198, 1201
BmcAI AGTACT 1 cut(s) 337
Bme1390I CCNGG 2 cut(s) 169, 1546
Bme18I GGWCC 1 cut(s) 1087
BmgT120I GGNCC 1 cut(s) 1087
BmiI GGNNCC 5 cut(s) 640, 702, 746, 816, 1088
BmrFI CCNGG 2 cut(s) 169, 1546
BmrI ACTGGG 1 cut(s) 635
BmsI GCATC 1 cut(s) 553
BmuI ACTGGG 1 cut(s) 635
BpmI CTGGAG 3 cut(s) 1231, 1279, 1327
Bpu10I CCTNAGC 2 cut(s) 446, 528
BsaJI CCNNGG 3 cut(s) 120, 167, 168
BsaWI WCCGGW 2 cut(s) 635, 1532
Bsc4I CCNNNNNNNGG 1 cut(s) 754
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 6 cut(s) 22, 514, 630, 920, 1098, 1470
Bse3DI GCAATG 4 cut(s) 605, 966, 1189, 1198
BseBI CCWGG 2 cut(s) 169, 1546
BseDI CCNNGG 3 cut(s) 120, 167, 168
BseGI GGATG 5 cut(s) 89, 515, 568, 1415, 1474
BseLI CCNNNNNNNGG 1 cut(s) 754
BseMI GCAATG 4 cut(s) 605, 966, 1189, 1198
BseMII CTCAG 4 cut(s) 135, 542, 861, 1187
BseNI ACTGG 6 cut(s) 22, 514, 630, 920, 1098, 1470
BseXI GCAGC 7 cut(s) 94, 253, 256, 719, 1022, 1183, 1186
Bsh1236I CGCG 3 cut(s) 1234, 1282, 1330
Bsh1285I CGRYCG 1 cut(s) 1232
BshFI GGCC 1 cut(s) 893
BshNI GGYRCC 1 cut(s) 638
BshTI ACCGGT 1 cut(s) 635
BsiEI CGRYCG 1 cut(s) 1232
BsiHKAI GWGCWC 2 cut(s) 1132, 1366
BsiSI CCGG 2 cut(s) 636, 1533
BslI CCNNNNNNNGG 1 cut(s) 754
BsmAI GTCTC 1 cut(s) 821
BsnI GGCC 1 cut(s) 893
Bsp1286I GDGCHC 2 cut(s) 1132, 1366
BspACI CCGC 1 cut(s) 550
BspANI GGCC 1 cut(s) 893
BspCNI CTCAG 4 cut(s) 136, 541, 862, 1186
BspFNI CGCG 3 cut(s) 1234, 1282, 1330
BspLI GGNNCC 5 cut(s) 640, 702, 746, 816, 1088
BspMAI CTGCAG 2 cut(s) 274, 709
BspMI ACCTGC 2 cut(s) 712, 964
BspPI GGATC 5 cut(s) 18, 1235, 1283, 1331, 1413
BspT107I GGYRCC 1 cut(s) 638
BsrDI GCAATG 4 cut(s) 605, 966, 1189, 1198
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 6 cut(s) 22, 514, 630, 920, 1098, 1470
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 3 cut(s) 120, 167, 168
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 169, 1546
Bst4CI ACNGT 3 cut(s) 34, 191, 1515
Bst6I CTCTTC 3 cut(s) 475, 483, 876
BstC8I GCNNGC 1 cut(s) 1189
BstF5I GGATG 5 cut(s) 89, 515, 568, 1415, 1474
BstFNI CGCG 3 cut(s) 1234, 1282, 1330
BstHHI GCGC 2 cut(s) 846, 986
BstMAI GTCTC 1 cut(s) 821
BstMCI CGRYCG 1 cut(s) 1232
BstMWI GCNNNNNNNGC 3 cut(s) 200, 1188, 1193
BstNI CCWGG 2 cut(s) 169, 1546
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 167, 1544
BstSFI CTRYAG 2 cut(s) 270, 705
BstUI CGCG 3 cut(s) 1234, 1282, 1330
BstV1I GCAGC 7 cut(s) 94, 253, 256, 719, 1022, 1183, 1186
BstX2I RGATCY 8 cut(s) 23, 373, 572, 993, 1240, 1288, 1336, 1405
BstYI RGATCY 8 cut(s) 23, 373, 572, 993, 1240, 1288, 1336, 1405
BsuRI GGCC 1 cut(s) 893
BtsCI GGATG 5 cut(s) 89, 515, 568, 1415, 1474
BtsIMutI CAGTG 2 cut(s) 196, 1158
BveI ACCTGC 2 cut(s) 712, 964
Cac8I GCNNGC 1 cut(s) 1189
CfoI GCGC 2 cut(s) 846, 986
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 1 cut(s) 1087
Csp6I GTAC 3 cut(s) 336, 864, 974
CspAI ACCGGT 1 cut(s) 635
CviAII CATG 5 cut(s) 43, 241, 352, 424, 520
CviQI GTAC 3 cut(s) 336, 864, 974
DraI TTTAAA 1 cut(s) 102
DraIII CACNNNGTG 1 cut(s) 839
EaeI YGGCCR 1 cut(s) 891
Eam1104I CTCTTC 3 cut(s) 475, 483, 876
EarI CTCTTC 3 cut(s) 475, 483, 876
Eco130I CCWWGG 1 cut(s) 120
Eco32I GATATC 2 cut(s) 417, 1554
Eco47I GGWCC 1 cut(s) 1087
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 167, 1544
EcoRV GATATC 2 cut(s) 417, 1554
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 5 cut(s) 46, 244, 355, 427, 523
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FatI CATG 5 cut(s) 42, 240, 351, 423, 519
FauNDI CATATG 1 cut(s) 69
FbaI TGATCA 1 cut(s) 1477
Fnu4HI GCNGC 8 cut(s) 108, 267, 270, 551, 708, 1011, 1197, 1200
FokI GGATG 5 cut(s) 76, 502, 575, 1402, 1481
Fsp4HI GCNGC 8 cut(s) 108, 267, 270, 551, 708, 1011, 1197, 1200
FspBI CTAG 3 cut(s) 6, 333, 576
GlaI GCGC 2 cut(s) 845, 985
GluI GCNGC 8 cut(s) 108, 267, 270, 551, 708, 1011, 1197, 1200
GsuI CTGGAG 3 cut(s) 1231, 1279, 1327
HaeIII GGCC 1 cut(s) 893
HapII CCGG 2 cut(s) 636, 1533
HhaI GCGC 2 cut(s) 846, 986
Hin1II CATG 5 cut(s) 46, 244, 355, 427, 523
Hin6I GCGC 2 cut(s) 844, 984
HinP1I GCGC 2 cut(s) 844, 984
HinfI GANTC 6 cut(s) 9, 86, 386, 535, 583, 934
HpaII CCGG 2 cut(s) 636, 1533
HphI GGTGA 1 cut(s) 787
Hpy166II GTNNAC 1 cut(s) 925
Hpy8I GTNNAC 1 cut(s) 925
HpyAV CCTTC 7 cut(s) 145, 304, 361, 1031, 1103, 1349, 1539
HpyCH4III ACNGT 3 cut(s) 34, 191, 1515
HpyCH4IV ACGT 2 cut(s) 495, 1431
HpyCH4V TGCA 9 cut(s) 194, 240, 272, 466, 506, 707, 959, 1010, 1182
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 1188, 1193
HpySE526I ACGT 2 cut(s) 495, 1431
Hsp92II CATG 5 cut(s) 46, 244, 355, 427, 523
HspAI GCGC 2 cut(s) 844, 984
Ksp22I TGATCA 1 cut(s) 1477
LmnI GCTCC 5 cut(s) 615, 814, 1212, 1260, 1308
Lsp1109I GCAGC 7 cut(s) 94, 253, 256, 719, 1022, 1183, 1186
LweI GCATC 1 cut(s) 553
MaeI CTAG 3 cut(s) 6, 333, 576
MaeII ACGT 2 cut(s) 495, 1431
MaeIII GTNAC 3 cut(s) 458, 1156, 1489
MflI RGATCY 8 cut(s) 23, 373, 572, 993, 1240, 1288, 1336, 1405
MhlI GDGCHC 2 cut(s) 1132, 1366
MlsI TGGCCA 1 cut(s) 893
MluNI TGGCCA 1 cut(s) 893
MmeI TCCRAC 4 cut(s) 540, 855, 1094, 1114
Mox20I TGGCCA 1 cut(s) 893
Mph1103I ATGCAT 1 cut(s) 242
MroXI GAANNNNTTC 3 cut(s) 162, 743, 1448
MscI TGGCCA 1 cut(s) 893
MseI TTAA 7 cut(s) 101, 480, 588, 663, 800, 909, 1074
MslI CAYNNNNRTG 2 cut(s) 518, 636
Msp20I TGGCCA 1 cut(s) 893
MspI CCGG 2 cut(s) 636, 1533
MspR9I CCNGG 2 cut(s) 169, 1546
MvaI CCWGG 2 cut(s) 169, 1546
MvnI CGCG 3 cut(s) 1234, 1282, 1330
MwoI GCNNNNNNNGC 3 cut(s) 200, 1188, 1193
NdeI CATATG 1 cut(s) 69
NlaIII CATG 5 cut(s) 46, 244, 355, 427, 523
NlaIV GGNNCC 5 cut(s) 640, 702, 746, 816, 1088
NmuCI GTSAC 3 cut(s) 458, 1156, 1489
NsiI ATGCAT 1 cut(s) 242
NspI RCATGY 1 cut(s) 46
PasI CCCWGGG 1 cut(s) 168
PdmI GAANNNNTTC 3 cut(s) 162, 743, 1448
PfeI GAWTC 6 cut(s) 9, 86, 386, 535, 583, 934
PinAI ACCGGT 1 cut(s) 635
PkrI GCNGC 8 cut(s) 109, 268, 271, 552, 709, 1012, 1198, 1201
Ple19I CGATCG 1 cut(s) 1232
Psp1406I AACGTT 1 cut(s) 1431
Psp6I CCWGG 2 cut(s) 167, 1544
PspGI CCWGG 2 cut(s) 167, 1544
PspN4I GGNNCC 5 cut(s) 640, 702, 746, 816, 1088
PspPI GGNCC 1 cut(s) 1087
PstI CTGCAG 2 cut(s) 274, 709
PsuI RGATCY 8 cut(s) 23, 373, 572, 993, 1240, 1288, 1336, 1405
PvuI CGATCG 1 cut(s) 1232
RsaI GTAC 3 cut(s) 337, 865, 975
RsaNI GTAC 3 cut(s) 336, 864, 974
RseI CAYNNNNRTG 2 cut(s) 518, 636
SaqAI TTAA 7 cut(s) 101, 480, 588, 663, 800, 909, 1074
SatI GCNGC 8 cut(s) 108, 267, 270, 551, 708, 1011, 1197, 1200
Sau96I GGNCC 1 cut(s) 1087
ScaI AGTACT 1 cut(s) 337
ScrFI CCNGG 2 cut(s) 169, 1546
SduI GDGCHC 2 cut(s) 1132, 1366
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 2 cut(s) 270, 705
SinI GGWCC 1 cut(s) 1087
SmiMI CAYNNNNRTG 2 cut(s) 518, 636
SsiI CCGC 1 cut(s) 550
SspMI CTAG 3 cut(s) 6, 333, 576
StyD4I CCNGG 2 cut(s) 167, 1544
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 3 cut(s) 34, 191, 1515
TaiI ACGT 2 cut(s) 498, 1434
TaqI TCGA 1 cut(s) 653
TatI WGTACW 1 cut(s) 335
TauI GCSGC 1 cut(s) 553
TfiI GAWTC 6 cut(s) 9, 86, 386, 535, 583, 934
Tru1I TTAA 7 cut(s) 101, 480, 588, 663, 800, 909, 1074
Tru9I TTAA 7 cut(s) 101, 480, 588, 663, 800, 909, 1074
TscAI CASTG 2 cut(s) 196, 1165
TseFI GTSAC 3 cut(s) 458, 1156, 1489
TseI GCWGC 7 cut(s) 107, 266, 269, 707, 1010, 1196, 1199
Tsp45I GTSAC 3 cut(s) 458, 1156, 1489
TspDTI ATGAA 9 cut(s) 86, 129, 198, 257, 368, 752, 797, 1115, 1426
TspRI CASTG 2 cut(s) 196, 1165
VpaK11BI GGWCC 1 cut(s) 1087
XapI RAATTY 4 cut(s) 821, 897, 1004, 1448
XbaI TCTAGA 1 cut(s) 575
XceI RCATGY 1 cut(s) 46
XmnI GAANNNNTTC 3 cut(s) 162, 743, 1448
XspI CTAG 3 cut(s) 6, 333, 576
ZrmI AGTACT 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.