Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Forward (+)

31745882 .. 31754328

Gene Structure 8447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018552

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGATTTCTGCTGATGAAGTAGAGGACAAATGTACTAAAGATGATGGAAGGCTAGTTTCCTCTTGCTTGCACTCTTCACACACTAAGGATGTAAAACCGTATACAATGAAAAGAGAAGAAAATGTGAAAAATACAACTGGCACATCCATGGCAATTAAGTGGCAGAAGTTGGATGGATGGAGATCTAGACAGATTCTTAATCCCAAAACCCAAACATTGCCACACATTCCCTTAATGGGTTATACCACAAGCATGCACTCTTCAACTGCTATTAAAACTCAAAAAGAGGACATAAAGATGTATGTTGGGGAACTGGCAGCACCCTTTTCAATGGCAGAAATGATGAACAGGTTCCAATCAAGTATTAGAGACTTGTCATTGCCACGTTTTAACGGTTCTCTTTCACATAGTACTGTTGAGCTTGAAGAAGAGATGATGGCCAAAATTCCAAAATTTAAGGCTCGACCAGTAAACAAAAAGATTCTTGAAGTGCCATCATTACCTGCAATGTCAAGAAGTACACCACAGCCACCTGATTTTCAGGATAAACAATGGAAACCCCATCACCTTACTAAACCTAAAACTCCAGTGCTACATACATTATTGAGGGCTAGTCCACCCAGGGTGAAAACTTTTGTGGAAATTGAGCAAGAAGAACTTGAAAAGATCCCAAAATTCAAGGCGAAGCCTCTGGATAAGAAGATATTTGAATGTAAAGGAGATCTCAGGATGTTCTATGATGCTAAGAAAGAAGTGATTAAACCTTGGAATTTTACTTTGCAACAAATGAAAGAAAACACCACCACCACCCTCACCCCAACAGAATCCAATTCCAAGAACACAATGTCAAATCCATTCAATCTCCATACAGAGGAAAGAGGGGCTAAGAAAGCACACAAGTTTTTTACCGAAGTTATGCAGAAGCAATTGGAAGAAGAAAGCGCTAGGGCTCCCAAAACTAATCTATATCCTTACACCACTGACTACAGTGTGATCCCACCAAAGCTAAAGCCCAAGGAATTCACAAAACGGGAACCTTTCCAACCAGAGAGCTTACTGAGAGGTGGAAATGCAAAGGGAATTGGAAGAAAGACGGTGGATAGAGATGGAAGAAGCCAAATAAGGGTTTCCAAGGCAAAACCAATCTTCAAAGAGTTAAGGACAGAGATAATGTATAAGAGATGTAGAGAAGAGAGTGAAGCAGCAAGGATGGTGTCTAAGGGAAGCATCAAAAGCAAAGTCACCAAATCTGCGAGTTCTACAGCGGCAAGAGAGGCGAATGATGACGGTCAAATCAGCCACTTCAATGAGTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

440

Amino Acids

50.31

Weight (kDa)

9.67

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2_importin	PF12214	136 - 182	5.3e-11	Cell cycle regulated microtubule associated protein
TPX2_importin	PF12214	189 - 291	1.6e-11	Cell cycle regulated microtubule associated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	101
AciI	CCGC	1 cut(s)	1265
AclWI	GGATC	2 cut(s)	661, 988
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	5 cut(s)	444, 452, 674, 769, 1019
AfaI	GTAC	3 cut(s)	34, 412, 520
AfeI	AGCGCT	1 cut(s)	943
AfiI	CCNNNNNNNGG	3 cut(s)	236, 871, 1123
AjnI	CCWGG	1 cut(s)	620
AluBI	AGCT	3 cut(s)	421, 1006, 1053
AluI	AGCT	3 cut(s)	421, 1006, 1053
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	661, 988
Aor51HI	AGCGCT	1 cut(s)	943
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	2 cut(s)	317, 1202
ApoI	RAATTY	5 cut(s)	444, 452, 674, 769, 1019
ArsI	GACNNNNNNTTYG	2 cut(s)	1224, 1256
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	944
AsuHPI	GGTGA	4 cut(s)	557, 637, 805, 1234
BalI	TGGCCA	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	952
BbvI	GCAGC	2 cut(s)	329, 1214
BccI	CCATC	8 cut(s)	38, 167, 171, 430, 502, 570, 1100, 1204
BciT130I	CCWGG	1 cut(s)	622
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	4 cut(s)	53, 186, 612, 945
BfmI	CTRYAG	2 cut(s)	985, 1260
BfoI	RGCGCY	1 cut(s)	945
BfuAI	ACCTGC	1 cut(s)	511
BglII	AGATCT	2 cut(s)	182, 721
BisI	GCNGC	3 cut(s)	318, 1203, 1266
BlsI	GCNGC	3 cut(s)	319, 1204, 1267
BmcAI	AGTACT	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	622
BmiI	GGNNCC	3 cut(s)	353, 951, 1035
BmrFI	CCNGG	1 cut(s)	622
BmsI	GCATC	2 cut(s)	730, 1236
BpmI	CTGGAG	1 cut(s)	570
BsaBI	GATNNNNATC	1 cut(s)	181
BsaJI	CCNNGG	6 cut(s)	147, 620, 621, 764, 1014, 1131
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 871, 1123
Bse1I	ACTGG	4 cut(s)	142, 318, 467, 587
Bse3DI	GCAATG	3 cut(s)	215, 377, 513
Bse8I	GATNNNNATC	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	622
BseDI	CCNNGG	6 cut(s)	147, 620, 621, 764, 1014, 1131
BseGI	GGATG	6 cut(s)	94, 143, 178, 182, 735, 1215
BseJI	GATNNNNATC	1 cut(s)	181
BseLI	CCNNNNNNNGG	3 cut(s)	236, 871, 1123
BseMI	GCAATG	3 cut(s)	215, 377, 513
BseMII	CTCAG	2 cut(s)	739, 1049
BseNI	ACTGG	4 cut(s)	142, 318, 467, 587
BseXI	GCAGC	2 cut(s)	329, 1214
BshFI	GGCC	1 cut(s)	440
BslI	CCNNNNNNNGG	3 cut(s)	236, 871, 1123
BsmAI	GTCTC	1 cut(s)	363
BsnI	GGCC	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	952
Bsp143I	GATC	4 cut(s)	182, 666, 721, 993
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	1 cut(s)	1265
BspANI	GGCC	1 cut(s)	440
BspCNI	CTCAG	2 cut(s)	738, 1050
BspLI	GGNNCC	3 cut(s)	353, 951, 1035
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	2 cut(s)	661, 988
BsrDI	GCAATG	3 cut(s)	215, 377, 513
BsrI	ACTGG	4 cut(s)	142, 318, 467, 587
BssECI	CCNNGG	6 cut(s)	147, 620, 621, 764, 1014, 1131
BssMI	GATC	4 cut(s)	182, 666, 721, 993
BssNAI	GTATAC	1 cut(s)	102
BssT1I	CCWWGG	4 cut(s)	147, 764, 1014, 1131
Bst1107I	GTATAC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	6 cut(s)	99, 395, 415, 989, 1096, 1289
Bst6I	CTCTTC	4 cut(s)	79, 265, 423, 1185
BstC8I	GCNNGC	2 cut(s)	68, 254
BstDEI	CTNAG	6 cut(s)	84, 725, 744, 885, 1058, 1218
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	6 cut(s)	94, 143, 178, 182, 735, 1215
BstH2I	RGCGCY	1 cut(s)	945
BstHHI	GCGC	1 cut(s)	944
BstKTI	GATC	4 cut(s)	185, 669, 724, 996
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	4 cut(s)	182, 666, 721, 993
BstMWI	GCNNNNNNNGC	3 cut(s)	890, 1233, 1274
BstNI	CCWGG	1 cut(s)	622
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	620
BstSFI	CTRYAG	2 cut(s)	985, 1260
BstV1I	GCAGC	2 cut(s)	329, 1214
BstX2I	RGATCY	3 cut(s)	182, 666, 721
BstYI	RGATCY	3 cut(s)	182, 666, 721
BstZ17I	GTATAC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	440
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	6 cut(s)	94, 143, 178, 182, 735, 1215
BtsIMutI	CAGTG	3 cut(s)	594, 978, 994
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	2 cut(s)	68, 254
CfoI	GCGC	1 cut(s)	944
Csp6I	GTAC	3 cut(s)	33, 411, 519
CviAII	CATG	2 cut(s)	148, 253
CviQI	GTAC	3 cut(s)	33, 411, 519
DdeI	CTNAG	6 cut(s)	84, 725, 744, 885, 1058, 1218
DpnI	GATC	4 cut(s)	184, 668, 723, 995
DpnII	GATC	4 cut(s)	182, 666, 721, 993
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	4 cut(s)	79, 265, 423, 1185
EarI	CTCTTC	4 cut(s)	79, 265, 423, 1185
Eco130I	CCWWGG	4 cut(s)	147, 764, 1014, 1131
Eco24I	GRGCYC	1 cut(s)	952
Eco47III	AGCGCT	1 cut(s)	943
EcoRI	GAATTC	1 cut(s)	1019
EcoRII	CCWGG	1 cut(s)	620
EcoT14I	CCWWGG	4 cut(s)	147, 764, 1014, 1131
EcoT38I	GRGCYC	1 cut(s)	952
ErhI	CCWWGG	4 cut(s)	147, 764, 1014, 1131
FaeI	CATG	2 cut(s)	151, 256
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FatI	CATG	2 cut(s)	147, 252
FblI	GTMKAC	1 cut(s)	101
Fnu4HI	GCNGC	3 cut(s)	318, 1203, 1266
FokI	GGATG	6 cut(s)	101, 130, 185, 189, 742, 1222
FriOI	GRGCYC	1 cut(s)	952
Fsp4HI	GCNGC	3 cut(s)	318, 1203, 1266
FspBI	CTAG	4 cut(s)	53, 186, 612, 945
GlaI	GCGC	1 cut(s)	943
GluI	GCNGC	3 cut(s)	318, 1203, 1266
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	945
HaeIII	GGCC	1 cut(s)	440
HhaI	GCGC	1 cut(s)	944
Hin1II	CATG	2 cut(s)	151, 256
Hin6I	GCGC	1 cut(s)	942
HinP1I	GCGC	1 cut(s)	942
HinfI	GANTC	3 cut(s)	193, 481, 824
HphI	GGTGA	4 cut(s)	557, 637, 805, 1234
Hpy166II	GTNNAC	4 cut(s)	102, 472, 521, 617
Hpy188III	TCNNGA	6 cut(s)	186, 485, 513, 542, 692, 727
Hpy8I	GTNNAC	4 cut(s)	102, 472, 521, 617
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	6 cut(s)	99, 395, 415, 989, 1096, 1289
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	6 cut(s)	70, 256, 506, 781, 919, 1073
HpyF10VI	GCNNNNNNNGC	3 cut(s)	890, 1233, 1274
HpyF3I	CTNAG	6 cut(s)	84, 725, 744, 885, 1058, 1218
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	2 cut(s)	151, 256
HspAI	GCGC	1 cut(s)	942
Kzo9I	GATC	4 cut(s)	182, 666, 721, 993
LmnI	GCTCC	1 cut(s)	955
Lsp1109I	GCAGC	2 cut(s)	329, 1214
LweI	GCATC	2 cut(s)	730, 1236
MaeI	CTAG	4 cut(s)	53, 186, 612, 945
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	1 cut(s)	1240
MalI	GATC	4 cut(s)	184, 668, 723, 995
MboI	GATC	4 cut(s)	182, 666, 721, 993
MfeI	CAATTG	1 cut(s)	926
MflI	RGATCY	3 cut(s)	182, 666, 721
MhlI	GDGCHC	1 cut(s)	952
MlsI	TGGCCA	1 cut(s)	440
MluNI	TGGCCA	1 cut(s)	440
MmeI	TCCRAC	2 cut(s)	150, 1066
Mox20I	TGGCCA	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	8 cut(s)	156, 198, 233, 273, 390, 456, 759, 1157
MslI	CAYNNNNRTG	4 cut(s)	146, 251, 296, 1305
Msp20I	TGGCCA	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	1265
MspR9I	CCNGG	1 cut(s)	622
MunI	CAATTG	1 cut(s)	926
MvaI	CCWGG	1 cut(s)	622
MwoI	GCNNNNNNNGC	3 cut(s)	890, 1233, 1274
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	4 cut(s)	182, 666, 721, 993
NlaIII	CATG	2 cut(s)	151, 256
NlaIV	GGNNCC	3 cut(s)	353, 951, 1035
NmuCI	GTSAC	1 cut(s)	1240
NspI	RCATGY	1 cut(s)	256
PaeI	GCATGC	1 cut(s)	256
PasI	CCCWGGG	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	193, 481, 824
PkrI	GCNGC	3 cut(s)	319, 1204, 1267
Psp6I	CCWGG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	620
PspN4I	GGNNCC	3 cut(s)	353, 951, 1035
PsuI	RGATCY	3 cut(s)	182, 666, 721
RsaI	GTAC	3 cut(s)	34, 412, 520
RsaNI	GTAC	3 cut(s)	33, 411, 519
RseI	CAYNNNNRTG	4 cut(s)	146, 251, 296, 1305
SaqAI	TTAA	8 cut(s)	156, 198, 233, 273, 390, 456, 759, 1157
SatI	GCNGC	3 cut(s)	318, 1203, 1266
Sau3AI	GATC	4 cut(s)	182, 666, 721, 993
ScaI	AGTACT	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	622
SduI	GDGCHC	1 cut(s)	952
SfaNI	GCATC	2 cut(s)	730, 1236
SfcI	CTRYAG	2 cut(s)	985, 1260
SmiMI	CAYNNNNRTG	4 cut(s)	146, 251, 296, 1305
SphI	GCATGC	1 cut(s)	256
SsiI	CCGC	1 cut(s)	1265
SspMI	CTAG	4 cut(s)	53, 186, 612, 945
StyD4I	CCNGG	1 cut(s)	620
StyI	CCWWGG	4 cut(s)	147, 764, 1014, 1131
TaaI	ACNGT	6 cut(s)	99, 395, 415, 989, 1096, 1289
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	1 cut(s)	463
TatI	WGTACW	3 cut(s)	32, 410, 518
TauI	GCSGC	1 cut(s)	1268
TfiI	GAWTC	3 cut(s)	193, 481, 824
Tru1I	TTAA	8 cut(s)	156, 198, 233, 273, 390, 456, 759, 1157
Tru9I	TTAA	8 cut(s)	156, 198, 233, 273, 390, 456, 759, 1157
TscAI	CASTG	3 cut(s)	594, 985, 994
TseFI	GTSAC	1 cut(s)	1240
TseI	GCWGC	2 cut(s)	317, 1202
Tsp45I	GTSAC	1 cut(s)	1240
TspDTI	ATGAA	4 cut(s)	30, 122, 359, 803
TspRI	CASTG	3 cut(s)	594, 985, 994
XapI	RAATTY	5 cut(s)	444, 452, 674, 769, 1019
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	4 cut(s)	53, 186, 612, 945
ZrmI	AGTACT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.