Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Reverse (-)

19654025 .. 19661286

Gene Structure 7262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28471.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCAGAAATGATGAACAGGTTCCAATCAAGTACCAGAGGCTTGTCGCTGCCGCATGCTAATGGTTCTATTTCACACTTGGTCAGACTCACCCTAACAAGACCAAAGGAGCCAGAATTTGAGACATCACAGCGTGTGCGCTCAGTTAGAGTGAAGAGTACTGCTGAGCTGGAAGAAGAGATGATGGCCAAAATTCCAAAGTTTAAGGCTCGTCCAGTAAACAAAAAGATTCTTGAAGCGCCATCATTACCTGCAATGTCAAGAAGTACCCCACAGCCACCTGCATTTCAGAACTTTAGAAACGGTTATACTGATGGGGAAGGCTGGGTTTTTGCATTTGTGGAGACAGTTGTTCAAGGTGAATTGGAATATCCTGCGGCTCACGGAAGAAGTACACGGATTGTTGAAGAATATGAAGGTGTACGTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

144

Amino Acids

16.17

Weight (kDa)

9.39

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2_importin	PF12214	31 - 100	4.1e-25	Cell cycle regulated microtubule associated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	289
Acc36I	ACCTGC	2 cut(s)	259, 289
AciI	CCGC	2 cut(s)	53, 377
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	116, 192
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	6 cut(s)	34, 160, 268, 394, 423, 427
AgsI	TTSAA	3 cut(s)	236, 356, 407
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	116, 338
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	2 cut(s)	116, 192
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	141, 241
AsuHPI	GGTGA	2 cut(s)	82, 371
BalI	TGGCCA	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	178, 250, 308
BcoDI	GTCTC	2 cut(s)	116, 338
BfoI	RGCGCY	1 cut(s)	242
BfuAI	ACCTGC	2 cut(s)	259, 289
BisI	GCNGC	3 cut(s)	50, 53, 378
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	3 cut(s)	51, 54, 379
BmcAI	AGTACT	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	23, 111
Bpu1102I	GCTNAGC	1 cut(s)	165
BsaAI	YACGTR	2 cut(s)	425, 429
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	156, 156
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	324
BshFI	GGCC	1 cut(s)	188
BsiWI	CGTACG	1 cut(s)	425
BsmAI	GTCTC	2 cut(s)	116, 338
BsnI	GGCC	1 cut(s)	188
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	2 cut(s)	53, 377
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	155, 157
BspLI	GGNNCC	2 cut(s)	23, 111
BspMI	ACCTGC	2 cut(s)	259, 289
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	305, 349
Bst6I	CTCTTC	2 cut(s)	149, 171
BstBAI	YACGTR	2 cut(s)	425, 429
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	142, 165
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	141, 241
BstMAI	GTCTC	2 cut(s)	116, 338
BstNSI	RCATGY	1 cut(s)	59
BstSNI	TACGTA	2 cut(s)	425, 429
BstV1I	GCAGC	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	188
BveI	ACCTGC	2 cut(s)	259, 289
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	2 cut(s)	141, 241
Csp6I	GTAC	6 cut(s)	33, 159, 267, 393, 422, 426
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	8 cut(s)	42, 112, 169, 188, 209, 277, 324, 380
CviKI_1	RGCY	8 cut(s)	42, 112, 169, 188, 209, 277, 324, 380
CviQI	GTAC	6 cut(s)	33, 159, 267, 393, 422, 426
DdeI	CTNAG	2 cut(s)	142, 165
DraIII	CACNNNGTG	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	149, 171
EarI	CTCTTC	2 cut(s)	149, 171
Eco105I	TACGTA	2 cut(s)	425, 429
FaeI	CATG	1 cut(s)	59
FaiI	YATR	3 cut(s)	57, 309, 414
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	50, 53, 378
Fsp4HI	GCNGC	3 cut(s)	50, 53, 378
GlaI	GCGC	2 cut(s)	140, 240
GluI	GCNGC	3 cut(s)	50, 53, 378
GsaI	CCCAGC	1 cut(s)	328
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	188
HhaI	GCGC	2 cut(s)	141, 241
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	2 cut(s)	139, 239
HinP1I	GCGC	2 cut(s)	139, 239
HinfI	GANTC	2 cut(s)	87, 229
HphI	GGTGA	2 cut(s)	82, 371
Hpy166II	GTNNAC	3 cut(s)	220, 395, 422
Hpy188I	TCNGA	2 cut(s)	86, 291
Hpy188III	TCNNGA	2 cut(s)	233, 261
Hpy8I	GTNNAC	3 cut(s)	220, 395, 422
HpyAV	CCTTC	2 cut(s)	314, 410
HpyCH4III	ACNGT	2 cut(s)	305, 349
HpyCH4IV	ACGT	2 cut(s)	424, 428
HpyCH4V	TGCA	3 cut(s)	254, 284, 335
HpyF3I	CTNAG	2 cut(s)	142, 165
HpySE526I	ACGT	2 cut(s)	424, 428
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	2 cut(s)	139, 239
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	9 cut(s)	4, 49, 126, 155, 228, 264, 294, 310, 387
Lsp1109I	GCAGC	1 cut(s)	36
MaeII	ACGT	2 cut(s)	424, 428
MboII	GAAGA	5 cut(s)	166, 185, 188, 399, 419
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	3 cut(s)	116, 192, 362
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	1 cut(s)	32
Mox20I	TGGCCA	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	188
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	23, 111
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PaqCI	CACCTGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	229
Pfl23II	CGTACG	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	51, 54, 379
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Ppu21I	YACGTR	2 cut(s)	425, 429
PspFI	CCCAGC	1 cut(s)	324
PspLI	CGTACG	1 cut(s)	425
PspN4I	GGNNCC	2 cut(s)	23, 111
RsaI	GTAC	6 cut(s)	34, 160, 268, 394, 423, 427
RsaNI	GTAC	6 cut(s)	33, 159, 267, 393, 422, 426
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	3 cut(s)	50, 53, 378
ScaI	AGTACT	1 cut(s)	160
SchI	GAGTC	1 cut(s)	81
SetI	ASST	8 cut(s)	23, 171, 253, 283, 361, 421, 427, 431
SmiMI	CAYNNNNRTG	1 cut(s)	60
SnaBI	TACGTA	2 cut(s)	425, 429
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	3 cut(s)	116, 192, 362
SsiI	CCGC	2 cut(s)	53, 377
TaaI	ACNGT	2 cut(s)	305, 349
TaiI	ACGT	2 cut(s)	427, 431
TasI	AATT	3 cut(s)	116, 192, 362
TatI	WGTACW	2 cut(s)	158, 392
TauI	GCSGC	2 cut(s)	55, 380
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	29, 429
TspGWI	ACGGA	2 cut(s)	399, 412
XapI	RAATTY	2 cut(s)	116, 192
XceI	RCATGY	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.