Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Reverse (-)

19602951 .. 19604234

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28450.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTAGCTCAGGAGAATCAGGCAATTAAGCGGCAGAAGTTGGATGCTGGAAGATCTAGACAGATTCTTAATCCGAAACCCCAAACGTTGCTCCAGAAGTCAAAACTGGGTCATACCAGTGCCACACATTTTTCAACTGCTAATAAAACTCCAAAGGAGGACAGGACGGCTTCACAATTTGTTTCAATGGCAGAAATGATGAACAGGTTCCAATCAAGTACCAGAGGCTTGTCGCTGCCGCATGCTAATGGTTCTATTTCACACATGAAGACTCACCCTAACAAGACCAAAGGAGCCAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

102

Amino Acids

11.24

Weight (kDa)

11.39

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	31, 239
AclI	AACGTT	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	300
AfaI	GTAC	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	135, 186
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	222
BceAI	ACGGC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	57
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	3 cut(s)	32, 236, 239
BlsI	GCNGC	3 cut(s)	33, 237, 240
BmiI	GGNNCC	2 cut(s)	209, 295
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	9
Bse1I	ACTGG	2 cut(s)	111, 117
BseGI	GGATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	111, 117
BseXI	GCAGC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	53
BspACI	CCGC	2 cut(s)	31, 239
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	209, 295
BsrI	ACTGG	2 cut(s)	111, 117
BssMI	GATC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	2 cut(s)	242, 265
CviJI	RGCY	4 cut(s)	8, 170, 228, 296
CviKI_1	RGCY	4 cut(s)	8, 170, 228, 296
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
FaeI	CATG	2 cut(s)	245, 268
FaiI	YATR	3 cut(s)	114, 243, 266
FatI	CATG	2 cut(s)	241, 264
Fnu4HI	GCNGC	3 cut(s)	32, 236, 239
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	3 cut(s)	32, 236, 239
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	3 cut(s)	32, 236, 239
GsuI	CTGGAG	1 cut(s)	77
Hin1II	CATG	2 cut(s)	245, 268
HinfI	GANTC	3 cut(s)	16, 64, 271
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	3 cut(s)	11, 57, 94
HpyCH4IV	ACGT	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	245, 268
Kzo9I	GATC	1 cut(s)	53
LmnI	GCTCC	2 cut(s)	96, 293
LpnPI	CCDG	8 cut(s)	5, 33, 92, 107, 130, 148, 190, 235
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	86
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MboII	GAAGA	2 cut(s)	63, 280
MflI	RGATCY	1 cut(s)	53
MluCI	AATT	3 cut(s)	24, 176, 300
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	2 cut(s)	151, 218
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	2 cut(s)	27, 69
MslI	CAYNNNNRTG	2 cut(s)	117, 246
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	245, 268
NlaIV	GGNNCC	2 cut(s)	209, 295
NspI	RCATGY	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	16, 64
PkrI	GCNGC	3 cut(s)	33, 237, 240
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp1406I	AACGTT	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	209, 295
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
RseI	CAYNNNNRTG	2 cut(s)	117, 246
SaqAI	TTAA	2 cut(s)	27, 69
SatI	GCNGC	3 cut(s)	32, 236, 239
Sau3AI	GATC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	265
SetI	ASST	3 cut(s)	10, 89, 209
SfaNI	GCATC	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	117, 246
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	3 cut(s)	24, 176, 300
SsiI	CCGC	2 cut(s)	31, 239
SspMI	CTAG	1 cut(s)	57
TaiI	ACGT	1 cut(s)	89
TasI	AATT	3 cut(s)	24, 176, 300
TauI	GCSGC	2 cut(s)	34, 241
TfiI	GAWTC	2 cut(s)	16, 64
Tru1I	TTAA	2 cut(s)	27, 69
Tru9I	TTAA	2 cut(s)	27, 69
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	215, 281
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	300
XbaI	TCTAGA	1 cut(s)	56
XceI	RCATGY	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.