Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Forward (+)

29115411 .. 29117918

Gene Structure 2508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0272600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAAACAATGGTGGAGGATGTGGTGATAGTAGGGGCAGGGATAGCCGGTTTGGCCACTGCAGTGGCGTTGAAGAGAGCAGGAATTGAAGCCCTTGTGTTGGAGAGATCCGAAGGGCTGAGAGCCACAGGTGCAGCCTTGACTCTATACCCCAACGCTTGGTCTGCTCTTGATGCATTGGGAATTTCTCAGAAGCTCGCAACTCGTTATGCCCCCACGCTAAAGGGACATATAATTGATGTTGACACAGGAGAAGTTCAAGAAGTGTCTAGAGCCATAACCAATGAGGTTTCAGTTGGACCGAGATGTTTACACCGGAAAGCCTTACTCGAGGCCTTGGCAGATGAATTACCAATTCATTCAGTCCGTTTCTCTTCCAAGATCACTGCTATTGATACCCAACAACATGAAGGTTCATCCCTTGCCATTGTTCACATGGAAAATGGAAATATTATCAAAGCAAAGGTTCTGATAGGGTGTGACGGTGTGCACTCGGTGGTGTCACGCTGGTTAGGGCTTGGTGAACCAGTCCTTTCGGGTCGATCAGCGGTTCGTGGATTGGCTGTGTTTCCTCAAGGCCATGGACTCGGCCAAAACTTCCGACAGTACGTAGGAACAAGCATAAGGGCTGGTTTTATTCCCGTTTCGGACAAAGACGTATATTGGTTCTTCAGTTGCATATCTCCAGCTAAAGGTGTAAGCTTGGGAGAGGATCCAGAAGAAACTAAAAAACAAGTACTTGAGAATTATGCCAAGGACCTCCCACCTTTATACCTAGATGTTGTGCAGCACTCGGATCTTTCAACGTTGACATGGGCTCCGCTGAAGTTCAGATATCCATGGCATGTTGTATTTGGGAACTTAAGCAAGCAAAACATCACGGTGGCCGGCGATGCCATGCACCCGATGACACCTGATTTAGCACAAGGAGGTGGCTCAGCATTAGAAGATGCCGTGGTCTTAGGCAGACACATAGGGAAATCCTTCGTAAAAAATGGACGAGTTCTGGTGCCAAAAGAGATGGTCGTCGCAATTGATAAATATGTAGAAGAAAGAAGGTGGCACGTTGCTTTGTTGGTTGCGGGATCTTATATATCAGGATGGGTGCAACAAGCAGGGTCTGCAGGCTGGGGTAAGAAATTCTTGAGGGATGTCATGTTTTACAAGTTCCTTTACCCTAAAATTGTTAGATATATGCACTATGACTGTGGAAAACTTGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

408

Amino Acids

44.5

Weight (kDa)

8.21

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	7 - 328	3.3e-25	FAD binding domain
DAO	PF01266	7 - 54	3.5e-07	FAD dependent oxidoreductase
Lycopene_cycl	PF05834	7 - 165	7.3e-06	Lycopene cyclase protein
NAD_binding_8	PF13450	10 - 40	6.7e-06	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1009
AccB7I	CCANNNNNTGG	1 cut(s)	159
AciI	CCGC	3 cut(s)	548, 821, 1082
AclI	AACGTT	1 cut(s)	806
AclWI	GGATC	5 cut(s)	102, 707, 720, 804, 1093
AcoI	YGGCCR	3 cut(s)	54, 589, 885
AcsI	RAATTY	2 cut(s)	183, 1139
AcuI	CTGAAG	2 cut(s)	655, 845
AdeI	CACNNNGTG	1 cut(s)	496
AfaI	GTAC	2 cut(s)	608, 738
AfiI	CCNNNNNNNGG	3 cut(s)	100, 159, 692
AflII	CTTAAG	1 cut(s)	862
AgsI	TTSAA	4 cut(s)	73, 89, 260, 804
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	196, 689, 702
AluI	AGCT	3 cut(s)	196, 689, 702
Alw21I	GWGCWC	1 cut(s)	492
Alw44I	GTGCAC	1 cut(s)	488
AlwI	GGATC	5 cut(s)	102, 707, 720, 804, 1093
AlwNI	CAGNNNCTG	1 cut(s)	1121
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	5 cut(s)	54, 333, 577, 589, 885
ApaLI	GTGCAC	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	134, 787
ApoI	RAATTY	2 cut(s)	183, 1139
Asp700I	GAANNNNTTC	1 cut(s)	983
AspS9I	GGNCC	2 cut(s)	299, 757
AsuHPI	GGTGA	2 cut(s)	37, 533
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	2 cut(s)	299, 757
BaeGI	GKGCMC	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	712
BanI	GGYRCC	1 cut(s)	1009
BanII	GRGCYC	1 cut(s)	820
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	146, 799
BccI	CCATC	2 cut(s)	1015, 1095
BceAI	ACGGC	1 cut(s)	938
BfaI	CTAG	3 cut(s)	270, 776, 1225
BfmI	CTRYAG	2 cut(s)	60, 1122
BfrI	CTTAAG	1 cut(s)	862
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	135, 788
BlpI	GCTNAGC	1 cut(s)	937
BlsI	GCNGC	2 cut(s)	136, 789
BmcAI	AGTACT	1 cut(s)	738
Bme18I	GGWCC	2 cut(s)	299, 757
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	299, 757
BmiI	GGNNCC	3 cut(s)	714, 819, 1011
BmsI	GCATC	3 cut(s)	163, 883, 940
BpmI	CTGGAG	1 cut(s)	669
Bpu1102I	GCTNAGC	1 cut(s)	937
BpuEI	CTTGAG	3 cut(s)	558, 761, 1165
BsaAI	YACGTR	1 cut(s)	610
BsaJI	CCNNGG	5 cut(s)	336, 580, 753, 839, 954
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 159, 692
Bse118I	RCCGGY	2 cut(s)	47, 887
Bse1I	ACTGG	1 cut(s)	527
BseDI	CCNNGG	5 cut(s)	336, 580, 753, 839, 954
BseGI	GGATG	4 cut(s)	25, 416, 1106, 1156
BseLI	CCNNNNNNNGG	3 cut(s)	100, 159, 692
BseMII	CTCAG	3 cut(s)	110, 203, 951
BseNI	ACTGG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	2 cut(s)	146, 799
BseYI	CCCAGC	1 cut(s)	1128
BsgI	GTGCAG	2 cut(s)	153, 806
BshFI	GGCC	5 cut(s)	56, 335, 579, 591, 887
BshNI	GGYRCC	1 cut(s)	1009
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	3 cut(s)	48, 316, 888
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	3 cut(s)	100, 159, 692
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	5 cut(s)	56, 335, 579, 591, 887
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	492, 820
Bsp143I	GATC	6 cut(s)	107, 381, 542, 712, 796, 1085
Bsp1720I	GCTNAGC	1 cut(s)	937
Bsp19I	CCATGG	2 cut(s)	580, 839
BspACI	CCGC	3 cut(s)	548, 821, 1082
BspANI	GGCC	5 cut(s)	56, 335, 579, 591, 887
BspCNI	CTCAG	3 cut(s)	111, 202, 950
BspLI	GGNNCC	3 cut(s)	714, 819, 1011
BspMAI	CTGCAG	2 cut(s)	64, 1126
BspPI	GGATC	5 cut(s)	102, 707, 720, 804, 1093
BspT107I	GGYRCC	1 cut(s)	1009
BspTI	CTTAAG	1 cut(s)	862
BsrFI	RCCGGY	2 cut(s)	47, 887
BsrI	ACTGG	1 cut(s)	527
BssAI	RCCGGY	2 cut(s)	47, 887
BssECI	CCNNGG	5 cut(s)	336, 580, 753, 839, 954
BssMI	GATC	6 cut(s)	107, 381, 542, 712, 796, 1085
BssT1I	CCWWGG	4 cut(s)	336, 580, 753, 839
Bst4CI	ACNGT	4 cut(s)	485, 606, 883, 1208
Bst6I	CTCTTC	2 cut(s)	68, 379
BstAFI	CTTAAG	1 cut(s)	862
BstAPI	GCANNNNNTGC	1 cut(s)	1121
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	4 cut(s)	198, 869, 889, 1126
BstDEI	CTNAG	4 cut(s)	119, 189, 937, 961
BstDSI	CCRYGG	3 cut(s)	580, 839, 954
BstF5I	GGATG	4 cut(s)	25, 416, 1106, 1156
BstKTI	GATC	6 cut(s)	110, 384, 545, 715, 799, 1088
BstMBI	GATC	6 cut(s)	107, 381, 542, 712, 796, 1085
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 53, 131, 164, 173, 893, 1121
BstNSI	RCATGY	1 cut(s)	848
BstSFI	CTRYAG	2 cut(s)	60, 1122
BstSLI	GKGCMC	1 cut(s)	492
BstSNI	TACGTA	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	146, 799
BstX2I	RGATCY	4 cut(s)	107, 712, 796, 1085
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	4 cut(s)	107, 712, 796, 1085
BsuRI	GGCC	5 cut(s)	56, 335, 579, 591, 887
BtgI	CCRYGG	3 cut(s)	580, 839, 954
BtgZI	GCGATG	1 cut(s)	906
BtsCI	GGATG	4 cut(s)	25, 416, 1106, 1156
BtsI	GCAGTG	3 cut(s)	57, 69, 384
BtsIMutI	CAGTG	3 cut(s)	57, 69, 384
Cac8I	GCNNGC	4 cut(s)	198, 869, 889, 1126
CaiI	CAGNNNCTG	1 cut(s)	1121
Cfr10I	RCCGGY	2 cut(s)	47, 887
Cfr13I	GGNCC	2 cut(s)	299, 757
Csp6I	GTAC	2 cut(s)	607, 737
CviAII	CATG	8 cut(s)	407, 436, 581, 813, 840, 845, 898, 1156
CviQI	GTAC	2 cut(s)	607, 737
DdeI	CTNAG	4 cut(s)	119, 189, 937, 961
DpnI	GATC	6 cut(s)	109, 383, 544, 714, 798, 1087
DpnII	GATC	6 cut(s)	107, 381, 542, 712, 796, 1085
DraIII	CACNNNGTG	1 cut(s)	496
EaeI	YGGCCR	3 cut(s)	54, 589, 885
Eam1104I	CTCTTC	2 cut(s)	68, 379
EarI	CTCTTC	2 cut(s)	68, 379
Eco105I	TACGTA	1 cut(s)	610
Eco130I	CCWWGG	4 cut(s)	336, 580, 753, 839
Eco147I	AGGCCT	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	820
Eco32I	GATATC	1 cut(s)	836
Eco47I	GGWCC	2 cut(s)	299, 757
Eco57I	CTGAAG	2 cut(s)	655, 845
Eco88I	CYCGRG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	757
EcoRV	GATATC	1 cut(s)	836
EcoT14I	CCWWGG	4 cut(s)	336, 580, 753, 839
EcoT22I	ATGCAT	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	820
ErhI	CCWWGG	4 cut(s)	336, 580, 753, 839
FaeI	CATG	8 cut(s)	410, 439, 584, 816, 843, 848, 901, 1159
FalI	AAGNNNNNCTT	2 cut(s)	1127, 1159
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	8 cut(s)	406, 435, 580, 812, 839, 844, 897, 1155
FauI	CCCGC	1 cut(s)	1075
Fnu4HI	GCNGC	2 cut(s)	135, 788
FokI	GGATG	4 cut(s)	32, 403, 1113, 1163
FriOI	GRGCYC	1 cut(s)	820
Fsp4HI	GCNGC	2 cut(s)	135, 788
FspBI	CTAG	3 cut(s)	270, 776, 1225
GluI	GCNGC	2 cut(s)	135, 788
GsaI	CCCAGC	1 cut(s)	1132
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	5 cut(s)	56, 335, 579, 591, 887
HapII	CCGG	3 cut(s)	48, 316, 888
Hin1II	CATG	8 cut(s)	410, 439, 584, 816, 843, 848, 901, 1159
HincII	GTYRAC	2 cut(s)	244, 810
HindII	GTYRAC	2 cut(s)	244, 810
HindIII	AAGCTT	1 cut(s)	700
HinfI	GANTC	2 cut(s)	142, 585
HpaII	CCGG	3 cut(s)	48, 316, 888
HphI	GGTGA	2 cut(s)	37, 533
Hpy166II	GTNNAC	6 cut(s)	244, 311, 433, 490, 524, 810
Hpy188I	TCNGA	7 cut(s)	112, 192, 471, 602, 649, 796, 833
Hpy188III	TCNNGA	6 cut(s)	170, 260, 270, 716, 1098, 1144
Hpy8I	GTNNAC	6 cut(s)	244, 311, 433, 490, 524, 810
Hpy99I	CGWCG	1 cut(s)	1031
HpyAV	CCTTC	4 cut(s)	107, 404, 994, 1050
HpyCH4III	ACNGT	4 cut(s)	485, 606, 883, 1208
HpyCH4IV	ACGT	4 cut(s)	609, 657, 806, 1065
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 53, 131, 164, 173, 893, 1121
HpyF3I	CTNAG	4 cut(s)	119, 189, 937, 961
HpySE526I	ACGT	4 cut(s)	609, 657, 806, 1065
Hsp92II	CATG	8 cut(s)	410, 439, 584, 816, 843, 848, 901, 1159
KroI	GCCGGC	1 cut(s)	887
KroNI	GCCGGC	1 cut(s)	889
Kzo9I	GATC	6 cut(s)	107, 381, 542, 712, 796, 1085
LmnI	GCTCC	1 cut(s)	823
Lsp1109I	GCAGC	2 cut(s)	146, 799
LweI	GCATC	3 cut(s)	163, 883, 940
MaeI	CTAG	3 cut(s)	270, 776, 1225
MaeII	ACGT	4 cut(s)	609, 657, 806, 1065
MaeIII	GTNAC	2 cut(s)	479, 501
MalI	GATC	6 cut(s)	109, 383, 544, 714, 798, 1087
MboI	GATC	6 cut(s)	107, 381, 542, 712, 796, 1085
MboII	GAAGA	6 cut(s)	85, 366, 661, 731, 959, 1061
MfeI	CAATTG	1 cut(s)	1032
MflI	RGATCY	4 cut(s)	107, 712, 796, 1085
MhlI	GDGCHC	2 cut(s)	492, 820
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	9 cut(s)	84, 183, 234, 347, 354, 745, 1032, 1139, 1182
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	136, 579
MmeI	TCCRAC	3 cut(s)	81, 277, 625
MnlI	CCTC	8 cut(s)	10, 280, 325, 582, 703, 770, 923, 1140
Mox20I	TGGCCA	1 cut(s)	56
Mph1103I	ATGCAT	1 cut(s)	178
MroNI	GCCGGC	1 cut(s)	887
MroXI	GAANNNNTTC	1 cut(s)	983
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	863
MslI	CAYNNNNRTG	2 cut(s)	62, 881
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	548, 823
MspCI	CTTAAG	1 cut(s)	862
MspI	CCGG	3 cut(s)	48, 316, 888
MunI	CAATTG	1 cut(s)	1032
MwoI	GCNNNNNNNGC	7 cut(s)	44, 53, 131, 164, 173, 893, 1121
NaeI	GCCGGC	1 cut(s)	889
NcoI	CCATGG	2 cut(s)	580, 839
NdeII	GATC	6 cut(s)	107, 381, 542, 712, 796, 1085
NgoMIV	GCCGGC	1 cut(s)	887
NlaIII	CATG	8 cut(s)	410, 439, 584, 816, 843, 848, 901, 1159
NlaIV	GGNNCC	3 cut(s)	714, 819, 1011
NmeAIII	GCCGAG	1 cut(s)	567
NmuCI	GTSAC	2 cut(s)	479, 501
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	848
OliI	CACNNNNGTG	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	335
PdiI	GCCGGC	1 cut(s)	889
PdmI	GAANNNNTTC	1 cut(s)	983
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	136, 789
PleI	GAGTC	2 cut(s)	136, 579
PpsI	GAGTC	2 cut(s)	136, 579
Ppu21I	YACGTR	1 cut(s)	610
PpuMI	RGGWCCY	1 cut(s)	757
Psp1406I	AACGTT	1 cut(s)	806
Psp5II	RGGWCCY	1 cut(s)	757
PspFI	CCCAGC	1 cut(s)	1128
PspN4I	GGNNCC	3 cut(s)	714, 819, 1011
PspPI	GGNCC	2 cut(s)	299, 757
PspPPI	RGGWCCY	1 cut(s)	757
PspXI	VCTCGAGB	1 cut(s)	329
PstI	CTGCAG	2 cut(s)	64, 1126
PstNI	CAGNNNCTG	1 cut(s)	1121
PsuI	RGATCY	4 cut(s)	107, 712, 796, 1085
RsaI	GTAC	2 cut(s)	608, 738
RsaNI	GTAC	2 cut(s)	607, 737
RseI	CAYNNNNRTG	2 cut(s)	62, 881
SaqAI	TTAA	1 cut(s)	863
SatI	GCNGC	2 cut(s)	135, 788
Sau3AI	GATC	6 cut(s)	107, 381, 542, 712, 796, 1085
Sau96I	GGNCC	2 cut(s)	299, 757
ScaI	AGTACT	1 cut(s)	738
SchI	GAGTC	2 cut(s)	136, 579
SduI	GDGCHC	2 cut(s)	492, 820
SfaNI	GCATC	3 cut(s)	163, 883, 940
SfcI	CTRYAG	2 cut(s)	60, 1122
Sfr274I	CTCGAG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	299, 757
SlaI	CTCGAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	2 cut(s)	62, 881
SmlI	CTYRAG	5 cut(s)	329, 573, 740, 862, 1144
SmoI	CTYRAG	5 cut(s)	329, 573, 740, 862, 1144
SnaBI	TACGTA	1 cut(s)	610
Sse9I	AATT	9 cut(s)	84, 183, 234, 347, 354, 745, 1032, 1139, 1182
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	3 cut(s)	548, 821, 1082
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	3 cut(s)	270, 776, 1225
StuI	AGGCCT	1 cut(s)	335
StyI	CCWWGG	4 cut(s)	336, 580, 753, 839
TaaI	ACNGT	4 cut(s)	485, 606, 883, 1208
TaiI	ACGT	4 cut(s)	612, 660, 809, 1068
TaqI	TCGA	2 cut(s)	330, 541
TaqII	GACCGA	1 cut(s)	316
TasI	AATT	9 cut(s)	84, 183, 234, 347, 354, 745, 1032, 1139, 1182
TatI	WGTACW	1 cut(s)	736
Tru1I	TTAA	1 cut(s)	863
Tru9I	TTAA	1 cut(s)	863
TscAI	CASTG	3 cut(s)	64, 69, 391
TseFI	GTSAC	2 cut(s)	479, 501
TseI	GCWGC	2 cut(s)	134, 787
Tsp45I	GTSAC	2 cut(s)	479, 501
TspDTI	ATGAA	4 cut(s)	347, 360, 405, 423
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	3 cut(s)	64, 69, 391
Van91I	CCANNNNNTGG	1 cut(s)	159
Vha464I	CTTAAG	1 cut(s)	862
VneI	GTGCAC	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	299, 757
XapI	RAATTY	2 cut(s)	183, 1139
XbaI	TCTAGA	1 cut(s)	269
XceI	RCATGY	1 cut(s)	848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XhoI	CTCGAG	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	3 cut(s)	270, 776, 1225
ZrmI	AGTACT	1 cut(s)	738
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.