Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Reverse (-)

19594848 .. 19598669

Gene Structure 3822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAATTATAGACATCGCTCTTTGGCTTTCATGAGAAAGTGCTGGTCTACAGAAAGAGGAGATCATAATCAATTAAGCTTAACGGGTACTTCTTTGGGGATTATTGAGGACCAGAGCAAACTAAAACCCACAGAGAGTAAAAGATTGGTATCAGAATCGTTGATTGCAGATTCAACCGTCTATTTAACCAGCGAATCGATTTGGCTTGTGGGGAAACAATTGTCTATATATGTAGCAGCTGCATTCTATTCTACTACTGAATTGCGGAAGAATGTTGTTATGGATTATATGGTGACCTTCAACAAATTCGCTGTTCCATTTTTAGTTAGGATTTATGTTCGGGAACCTGCAGCACCAGTTGTTTCAATGGCAGAAATGATGAACAGGTTCCAATCAAGTACCAGAGACTTGTCGCTGCCGCATGCTAATGGTTCTCTTTCACACCCTAAACTCACCTTAACAAGACCAAAGGAGCCAGAATTTGAGACATCACAGCGTGTGCGCTTAGTTAGAGTGAAGAGTACTGCTGAGCTGGAAGAAGAGATGATGGCCAAAATTCCAAAGTTCAAGGCTCGTCTAGTAAACAAAAAGAAGGAGGCTCCATCACAAATAGGCCAACAACTACCATTTGAGAGGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

215

Amino Acids

24.52

Weight (kDa)

9.59

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2_importin	PF12214	152 - 202	1.2e-14	Cell cycle regulated microtubule associated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	2 cut(s)	265, 419
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	3 cut(s)	305, 479, 555
AdeI	CACNNNGTG	1 cut(s)	497
AfaI	GTAC	3 cut(s)	88, 400, 523
AgsI	TTSAA	4 cut(s)	174, 301, 366, 568
AluBI	AGCT	3 cut(s)	78, 239, 532
AluI	AGCT	3 cut(s)	78, 239, 532
Alw26I	GTCTC	2 cut(s)	399, 479
AoxI	GGCC	2 cut(s)	549, 613
ApeKI	GCWGC	4 cut(s)	236, 239, 350, 415
ApoI	RAATTY	3 cut(s)	305, 479, 555
Asp700I	GAANNNNTTC	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	304, 445
AvaII	GGWCC	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	551
BbvI	GCAGC	4 cut(s)	226, 248, 362, 402
BccI	CCATC	2 cut(s)	541, 610
BcoDI	GTCTC	2 cut(s)	399, 479
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	2 cut(s)	48, 348
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	5 cut(s)	237, 240, 351, 416, 419
BlpI	GCTNAGC	1 cut(s)	528
BlsI	GCNGC	5 cut(s)	238, 241, 352, 417, 420
BmcAI	AGTACT	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	4 cut(s)	345, 389, 474, 600
Bpu1102I	GCTNAGC	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	197
BsaBI	GATNNNNATC	2 cut(s)	66, 148
Bse1I	ACTGG	1 cut(s)	356
Bse8I	GATNNNNATC	2 cut(s)	66, 148
BseCI	ATCGAT	1 cut(s)	197
BseJI	GATNNNNATC	2 cut(s)	66, 148
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	4 cut(s)	226, 248, 362, 402
BshFI	GGCC	2 cut(s)	551, 615
BshVI	ATCGAT	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	399, 479
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	551, 615
Bsp143I	GATC	1 cut(s)	61
Bsp1720I	GCTNAGC	1 cut(s)	528
BspACI	CCGC	2 cut(s)	265, 419
BspANI	GGCC	2 cut(s)	551, 615
BspCNI	CTCAG	1 cut(s)	520
BspDI	ATCGAT	1 cut(s)	197
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	4 cut(s)	345, 389, 474, 600
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	356
BssMI	GATC	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	2 cut(s)	512, 534
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	505, 528
BstEII	GGTNACC	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	2 cut(s)	399, 479
BstMBI	GATC	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	425
BstPI	GGTNACC	1 cut(s)	292
BstSFI	CTRYAG	2 cut(s)	48, 348
BstV1I	GCAGC	4 cut(s)	226, 248, 362, 402
Bsu15I	ATCGAT	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	551, 615
BsuTUI	ATCGAT	1 cut(s)	197
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	423
CciI	TCATGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	87, 399, 522
CviAII	CATG	2 cut(s)	31, 422
CviQI	GTAC	3 cut(s)	87, 399, 522
DdeI	CTNAG	2 cut(s)	505, 528
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
DraIII	CACNNNGTG	1 cut(s)	497
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	2 cut(s)	512, 534
EarI	CTCTTC	2 cut(s)	512, 534
Eco47I	GGWCC	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	292
FaeI	CATG	2 cut(s)	34, 425
FatI	CATG	2 cut(s)	30, 421
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	5 cut(s)	237, 240, 351, 416, 419
Fsp4HI	GCNGC	5 cut(s)	237, 240, 351, 416, 419
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	5 cut(s)	237, 240, 351, 416, 419
HaeIII	GGCC	2 cut(s)	551, 615
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	2 cut(s)	34, 425
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	3 cut(s)	155, 170, 194
HphI	GGTGA	2 cut(s)	304, 445
Hpy166II	GTNNAC	2 cut(s)	48, 583
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	31, 341
Hpy8I	GTNNAC	2 cut(s)	48, 583
HpyAV	CCTTC	2 cut(s)	307, 586
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	3 cut(s)	167, 242, 350
HpyF3I	CTNAG	2 cut(s)	505, 528
Hsp92II	CATG	2 cut(s)	34, 425
HspAI	GCGC	1 cut(s)	502
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	472, 604
LpnPI	CCDG	9 cut(s)	28, 125, 202, 360, 369, 370, 415, 489, 518
Lsp1109I	GCAGC	4 cut(s)	226, 248, 362, 402
MaeI	CTAG	1 cut(s)	578
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	4 cut(s)	280, 529, 548, 551
MfeI	CAATTG	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	7 cut(s)	4, 71, 218, 260, 305, 479, 555
MluNI	TGGCCA	1 cut(s)	551
MnlI	CCTC	4 cut(s)	50, 100, 589, 627
Mox20I	TGGCCA	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	4 cut(s)	74, 80, 185, 458
MslI	CAYNNNNRTG	1 cut(s)	426
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	239
MunI	CAATTG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	242
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	34, 425
NlaIV	GGNNCC	4 cut(s)	345, 389, 474, 600
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	425
PaeI	GCATGC	1 cut(s)	425
PagI	TCATGA	1 cut(s)	30
PctI	GAATGC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	3 cut(s)	155, 170, 194
PkrI	GCNGC	5 cut(s)	238, 241, 352, 417, 420
PspEI	GGTNACC	1 cut(s)	292
PspN4I	GGNNCC	4 cut(s)	345, 389, 474, 600
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	3 cut(s)	88, 400, 523
RsaNI	GTAC	3 cut(s)	87, 399, 522
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	4 cut(s)	74, 80, 185, 458
SatI	GCNGC	5 cut(s)	237, 240, 351, 416, 419
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	109
ScaI	AGTACT	1 cut(s)	523
SetI	ASST	7 cut(s)	80, 241, 299, 349, 389, 458, 534
SfcI	CTRYAG	2 cut(s)	48, 348
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	426
SphI	GCATGC	1 cut(s)	425
Sse9I	AATT	7 cut(s)	4, 71, 218, 260, 305, 479, 555
SsiI	CCGC	2 cut(s)	265, 419
SspMI	CTAG	1 cut(s)	578
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	197
TasI	AATT	7 cut(s)	4, 71, 218, 260, 305, 479, 555
TatI	WGTACW	1 cut(s)	521
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	3 cut(s)	155, 170, 194
Tru1I	TTAA	4 cut(s)	74, 80, 185, 458
Tru9I	TTAA	4 cut(s)	74, 80, 185, 458
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	4 cut(s)	236, 239, 350, 415
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	17, 19, 395
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	3 cut(s)	305, 479, 555
XceI	RCATGY	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	578
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.