Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Reverse (-)

44137961 .. 44143222

Gene Structure 5262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG333900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGCCGCCGGCGACCGAGGAACCTAACACGACGGCGTCCTCGACGACGATGATGATCGACGAGATTTATGAGTTCTCGGCCCCGCGCTTCTTCGATTTCATCAAGGACGAGACCGACGATGACAAGATCAACGCCGAGCTCTGGTTCGACTCCGCCACAGCCTACGCCCCTTCCCCCTTCATGCCTAGAATCAAGACTGGTAGATCCTTTACAGTAGAGAGCATGTGCGACTTTACTGAAGCGGAAAATATGCAGAAGAACCTTGAATCATCCTCAGCTGATGATGATTCTACGGAAACCAAGACTGAGTCGAAGATCACTCCTGAATTGAAGGAAGAAACAATTCCCACGGAGGCTAAAGAAGAAAACAGTACAAGACAAGCCAATATGATTTCTGCTGATAAAGTCGAGGAAAAATGTACTATAGATGATGGAAGTGTTTTGGCCACTGCGGTATCTTTGAATAAGGGAACTGATATGACAAATGAGAAGGAGAATAGTAATTCCGTAGCTTGTACTCCAAAACCACCCATGAATTATTCCAAGAAGGGAGATCTTCTGAGTGATTCCAAAAAGCACCAGGGAGCTAAAAAGATATCAAGTATGGTTAGAAACCCATCAGGGCTAAGGGGAAAAAGTCACTTGCACTCTTCACAAACTAAGAATGTCAAACCGTATACTATGAAAAGAGAAGAAAATGTGAAAAATACAACTGGCACACCCATGTTAGCTCAGGAGAATCAGGCAATTAAGCGGCAGAAGTTGGATGGTGGGAGATCTAGACAGATTCTTAATCCCAAACCCCAAACATTGCCCCACAAGTCAAAATTGGGTTATACCAGTGGCATGCATTCTTCATCAACTGCTGTTAAAACTCAAAAAGAGGACAGAAAGATGTATGTTCGGGAACCAGCAGCACCCTTTGTTTCAATGGCAGAAATGATGAACAGGTTCCAATCAAGTACCAGAGACTTGTCACTGCCACACAGTTCTCTTTCTCATATGAAGCCCAAACTCACCTTAACAAGGCCAAAGGAGCCTGAATTTGAAACATCCCAGCGTGTCCGCTCAGTAAGAGTAAAGAGTACTGCCGAGCTTGAAGAAGAGATGATGGCCAAAATTCCAAAGTTTAAGGCTCGACCTGTAAACAAAAAGATTCTTGAAGCGCCATCCTTACCTGCAAAGCCAAGAAGTACACCACAGCCACCTGAGTTTCAGGAATTCCATTTAGAGACTATGGCAAGGGCCAATCAAAACGCAGAAACATCCTCAGTAGCTTCAACTGATGTGCCACGACAGAACAAACAATCGAAGCCCCATCATCTTACTGAACCGAAAACTCCAACGTTACATACATTATTGAGGGCCCGTCCACCCAGGGTGAAAACTTCACTGGAAATTGAGCAGGAAGAACTTGAAAAGATCCCAAAATTCAAAGCGAAGCCTCTTAATAAGAAGATATTTGAAAGTAAAGGAGATCTTGGGATGTTCTGTAATGCCAAGAAACAAGTGACTAAACCTCAGGAATTTCACTTTGCAACAAATGAAAGAATACCACCACCACCACCACCATCAGCCATTCATGATCTATTTGATAAGTTGTCTTTGAACTCAGAGCCCCACCAGAATCCAATTCCAAGAAACACAATGCCAAATCCTTTCCATCTCCATACAGAGGAAAGAGGAGCTGAGAAAGAAAGGAAATTTTTTACTGAAGTTATGCAGAAGCAACTGGAAGAAGAAAGAGCTAGGGTTCCCAAAGCTAATCCATATCCTTATACCACTGATTACCCTGTGATCCCACCAAAGCCAGAGCCCAAGGAATGCACAAAACCGGAACCTTTCCAACTAGAGAGCTTAGCGAGGCATGAGGAGGAAATGCAAAGGGAAATGGAAGAAAGACGGAGGATAGAGATGGAAGAAGCTCAGATGAGGGTTTTCAAGGCACAACCAATCTTGAAAGAGGACCCAATTCCAGTTCCCGAGAGAGTTCGCAAGCCTCTAACAGAAGTTCAAGAATTCAATCTGAATGTTAATAATCGGGCAGTGCACAGAGCAGAATTTGATCACAAGGTTAAGGAGAAAGAGATAATATATAAGAGATATAGAGAAGAGAGTGAAGCAGCAAGGATGGTATGCATGCTTTTTCAAAATTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

720

Amino Acids

82.41

Weight (kDa)

8.71

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2_importin	PF12214	340 - 430	8.1e-32	Cell cycle regulated microtubule associated protein
TPX2_importin	PF12214	441 - 518	7.6e-18	Cell cycle regulated microtubule associated protein
TPX2	PF06886	674 - 711	1.3e-06	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1186
AccBSI	CCGCTC	1 cut(s)	1068
AccI	GTMKAC	1 cut(s)	677
AccII	CGCG	1 cut(s)	85
AciI	CCGC	7 cut(s)	5, 83, 153, 242, 452, 754, 1066
AclI	AACGTT	1 cut(s)	1346
AclWI	GGATC	3 cut(s)	198, 1417, 1792
AcoI	YGGCCR	2 cut(s)	444, 1113
AcsI	RAATTY	9 cut(s)	1043, 1119, 1220, 1430, 1526, 1703, 2018, 2060, 2152
AcuI	CTGAAG	2 cut(s)	258, 1734
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	6 cut(s)	373, 421, 517, 964, 1087, 1195
AfiI	CCNNNNNNNGG	3 cut(s)	141, 1026, 1675
AjnI	CCWGG	2 cut(s)	579, 1376
Alw21I	GWGCWC	2 cut(s)	141, 2052
Alw26I	GTCTC	3 cut(s)	104, 963, 1226
Alw44I	GTGCAC	1 cut(s)	2048
AlwI	GGATC	3 cut(s)	198, 1417, 1792
Ama87I	CYCGRG	1 cut(s)	1982
AoxI	GGCC	6 cut(s)	78, 444, 1028, 1113, 1245, 1365
ApaI	GGGCCC	1 cut(s)	1369
ApaLI	GTGCAC	1 cut(s)	2048
ApeKI	GCWGC	2 cut(s)	914, 2123
ApoI	RAATTY	9 cut(s)	1043, 1119, 1220, 1430, 1526, 1703, 2018, 2060, 2152
Asp700I	GAANNNNTTC	2 cut(s)	342, 950
AspLEI	GCGC	2 cut(s)	87, 1168
AspS9I	GGNCC	5 cut(s)	79, 1245, 1365, 1366, 1966
AsuHPI	GGTGA	2 cut(s)	1009, 1393
AvaI	CYCGRG	1 cut(s)	1982
AvaII	GGWCC	1 cut(s)	1966
AxyI	CCTNAGG	1 cut(s)	1521
BaeGI	GKGCMC	2 cut(s)	1369, 2052
BaeI	ACNNNNGTAYC	2 cut(s)	438, 471
BalI	TGGCCA	2 cut(s)	446, 1115
BanII	GRGCYC	4 cut(s)	141, 1369, 1620, 1818
Bbv12I	GWGCWC	2 cut(s)	141, 2052
BbvCI	CCTCAGC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	926, 2135
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	2 cut(s)	581, 1378
BclI	TGATCA	1 cut(s)	2065
BcoDI	GTCTC	3 cut(s)	104, 963, 1226
BfaI	CTAG	4 cut(s)	186, 780, 1749, 1850
BfmI	CTRYAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	1169
BfuAI	ACCTGC	1 cut(s)	1186
BglII	AGATCT	3 cut(s)	553, 776, 1477
BisI	GCNGC	4 cut(s)	5, 755, 915, 2124
BlpI	GCTNAGC	1 cut(s)	1858
BlsI	GCNGC	4 cut(s)	6, 756, 916, 2125
BmcAI	AGTACT	1 cut(s)	1087
Bme1390I	CCNGG	2 cut(s)	581, 1378
Bme18I	GGWCC	1 cut(s)	1966
BmeT110I	CYCGRG	1 cut(s)	1982
BmgT120I	GGNCC	5 cut(s)	79, 1245, 1365, 1366, 1966
BmiI	GGNNCC	9 cut(s)	21, 81, 909, 953, 1038, 1367, 1755, 1839, 1968
BmrFI	CCNGG	2 cut(s)	581, 1378
Bpu10I	CCTNAGC	3 cut(s)	274, 626, 732
Bpu1102I	GCTNAGC	1 cut(s)	1858
BsaBI	GATNNNNATC	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	6 cut(s)	15, 348, 580, 1376, 1377, 1818
BsaWI	WCCGGW	1 cut(s)	1834
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 1026, 1675
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	6 cut(s)	202, 718, 840, 1398, 1737, 1976
Bse21I	CCTNAGG	1 cut(s)	1521
Bse3DI	GCAATG	1 cut(s)	809
Bse8I	GATNNNNATC	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	581, 1378
BseDI	CCNNGG	6 cut(s)	15, 348, 580, 1376, 1377, 1818
BseGI	GGATG	7 cut(s)	269, 772, 1052, 1169, 1265, 1491, 2136
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	3 cut(s)	141, 1026, 1675
BseMI	GCAATG	1 cut(s)	809
BseNI	ACTGG	6 cut(s)	202, 718, 840, 1398, 1737, 1976
BseRI	GAGGAG	2 cut(s)	1698, 1886
BseSI	GKGCMC	2 cut(s)	1369, 2052
BseXI	GCAGC	2 cut(s)	926, 2135
BseYI	CCCAGC	1 cut(s)	1056
Bsh1236I	CGCG	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	6 cut(s)	80, 446, 1030, 1115, 1247, 1367
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	141, 2052
BsiHKCI	CYCGRG	1 cut(s)	1982
BsiSI	CCGG	2 cut(s)	8, 1835
BslI	CCNNNNNNNGG	3 cut(s)	141, 1026, 1675
BsmAI	GTCTC	3 cut(s)	104, 963, 1226
BsmI	GAATGC	2 cut(s)	850, 1829
BsnI	GGCC	6 cut(s)	80, 446, 1030, 1115, 1247, 1367
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	1982
Bsp120I	GGGCCC	1 cut(s)	1365
Bsp1286I	GDGCHC	5 cut(s)	141, 1369, 1620, 1818, 2052
Bsp1720I	GCTNAGC	1 cut(s)	1858
BspACI	CCGC	7 cut(s)	5, 83, 153, 242, 452, 754, 1066
BspANI	GGCC	6 cut(s)	80, 446, 1030, 1115, 1247, 1367
BspFNI	CGCG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	1582
BspLI	GGNNCC	9 cut(s)	21, 81, 909, 953, 1038, 1367, 1755, 1839, 1968
BspMI	ACCTGC	1 cut(s)	1186
BspPI	GGATC	3 cut(s)	198, 1417, 1792
BspTNI	GGTCTC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	1068
BsrDI	GCAATG	1 cut(s)	809
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	6 cut(s)	202, 718, 840, 1398, 1737, 1976
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	6 cut(s)	15, 348, 580, 1376, 1377, 1818
BssNAI	GTATAC	1 cut(s)	678
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	1818
Bst1107I	GTATAC	1 cut(s)	678
Bst2UI	CCWGG	2 cut(s)	581, 1378
Bst4CI	ACNGT	4 cut(s)	214, 371, 675, 989
Bst6I	CTCTTC	3 cut(s)	655, 1098, 2106
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	4 cut(s)	9, 848, 1997, 2141
BstDSI	CCRYGG	1 cut(s)	348
BstENI	CCTNNNNNAGG	1 cut(s)	1024
BstF5I	GGATG	7 cut(s)	269, 772, 1052, 1169, 1265, 1491, 2136
BstFNI	CGCG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	1169
BstHHI	GCGC	2 cut(s)	87, 1168
BstMAI	GTCTC	3 cut(s)	104, 963, 1226
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	1036
BstNI	CCWGG	2 cut(s)	581, 1378
BstNSI	RCATGY	3 cut(s)	226, 850, 2143
BstSCI	CCNGG	2 cut(s)	579, 1376
BstSFI	CTRYAG	1 cut(s)	423
BstSLI	GKGCMC	2 cut(s)	1369, 2052
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	926, 2135
BstX2I	RGATCY	5 cut(s)	203, 553, 776, 1422, 1477
BstYI	RGATCY	5 cut(s)	203, 553, 776, 1422, 1477
BstZ17I	GTATAC	1 cut(s)	678
Bsu36I	CCTNAGG	1 cut(s)	1521
BsuRI	GGCC	6 cut(s)	80, 446, 1030, 1115, 1247, 1367
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	7 cut(s)	269, 772, 1052, 1169, 1265, 1491, 2136
BtsI	GCAGTG	3 cut(s)	447, 977, 2052
BtsIMutI	CAGTG	6 cut(s)	447, 847, 977, 1391, 1782, 2052
BveI	ACCTGC	1 cut(s)	1186
Cac8I	GCNNGC	4 cut(s)	9, 848, 1997, 2141
CciI	TCATGA	1 cut(s)	1582
CfoI	GCGC	2 cut(s)	87, 1168
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	5 cut(s)	79, 1245, 1365, 1366, 1966
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	6 cut(s)	372, 420, 516, 963, 1086, 1194
CviAII	CATG	8 cut(s)	181, 223, 532, 724, 847, 1583, 1868, 2140
CviQI	GTAC	6 cut(s)	372, 420, 516, 963, 1086, 1194
EaeI	YGGCCR	2 cut(s)	444, 1113
Eam1104I	CTCTTC	3 cut(s)	655, 1098, 2106
EarI	CTCTTC	3 cut(s)	655, 1098, 2106
EciI	GGCGGA	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	1818
Eco24I	GRGCYC	4 cut(s)	141, 1369, 1620, 1818
Eco31I	GGTCTC	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	1966
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	258, 1734
Eco81I	CCTNAGG	1 cut(s)	1521
Eco88I	CYCGRG	1 cut(s)	1982
EcoICRI	GAGCTC	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	1024
EcoO109I	RGGNCCY	2 cut(s)	1365, 1966
EcoRI	GAATTC	2 cut(s)	1220, 2018
EcoRII	CCWGG	2 cut(s)	579, 1376
EcoRV	GATATC	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	1818
EcoT22I	ATGCAT	2 cut(s)	852, 2141
EcoT38I	GRGCYC	4 cut(s)	141, 1369, 1620, 1818
ErhI	CCWWGG	1 cut(s)	1818
FaeI	CATG	8 cut(s)	184, 226, 535, 727, 850, 1586, 1871, 2143
FalI	AAGNNNNNCTT	2 cut(s)	1464, 1496
FatI	CATG	8 cut(s)	180, 222, 531, 723, 846, 1582, 1867, 2139
FauI	CCCGC	1 cut(s)	90
FauNDI	CATATG	1 cut(s)	1002
FbaI	TGATCA	1 cut(s)	2065
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	4 cut(s)	5, 755, 915, 2124
FokI	GGATG	7 cut(s)	256, 779, 1039, 1156, 1252, 1498, 2143
FriOI	GRGCYC	4 cut(s)	141, 1369, 1620, 1818
Fsp4HI	GCNGC	4 cut(s)	5, 755, 915, 2124
FspBI	CTAG	4 cut(s)	186, 780, 1749, 1850
GlaI	GCGC	2 cut(s)	86, 1167
GluI	GCNGC	4 cut(s)	5, 755, 915, 2124
GsaI	CCCAGC	1 cut(s)	1060
HaeII	RGCGCY	1 cut(s)	1169
HaeIII	GGCC	6 cut(s)	80, 446, 1030, 1115, 1247, 1367
HapII	CCGG	2 cut(s)	8, 1835
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	2 cut(s)	87, 1168
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	8 cut(s)	184, 226, 535, 727, 850, 1586, 1871, 2143
Hin6I	GCGC	2 cut(s)	85, 1166
HinP1I	GCGC	2 cut(s)	85, 1166
HpaII	CCGG	2 cut(s)	8, 1835
HphI	GGTGA	2 cut(s)	1009, 1393
Hpy166II	GTNNAC	5 cut(s)	678, 1147, 1196, 1373, 2050
Hpy188I	TCNGA	4 cut(s)	561, 1615, 1929, 2028
Hpy8I	GTNNAC	5 cut(s)	678, 1147, 1196, 1373, 2050
Hpy99I	CGWCG	5 cut(s)	34, 46, 49, 62, 119
HpyAV	CCTTC	5 cut(s)	180, 187, 325, 484, 541
HpyCH4III	ACNGT	4 cut(s)	214, 371, 675, 989
HpyCH4IV	ACGT	1 cut(s)	1346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1036
HpySE526I	ACGT	1 cut(s)	1346
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	8 cut(s)	184, 226, 535, 727, 850, 1586, 1871, 2143
HspAI	GCGC	2 cut(s)	85, 1166
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	2065
LmnI	GCTCC	3 cut(s)	584, 1036, 1685
Lsp1109I	GCAGC	2 cut(s)	926, 2135
MaeI	CTAG	4 cut(s)	186, 780, 1749, 1850
MaeII	ACGT	1 cut(s)	1346
MaeIII	GTNAC	4 cut(s)	638, 975, 1347, 1510
MbiI	CCGCTC	1 cut(s)	1068
MflI	RGATCY	5 cut(s)	203, 553, 776, 1422, 1477
MhlI	GDGCHC	5 cut(s)	141, 1369, 1620, 1818, 2052
MlsI	TGGCCA	2 cut(s)	446, 1115
MluNI	TGGCCA	2 cut(s)	446, 1115
MlyI	GAGTC	2 cut(s)	143, 317
MmeI	TCCRAC	3 cut(s)	744, 1367, 1870
Mox20I	TGGCCA	2 cut(s)	446, 1115
Mph1103I	ATGCAT	2 cut(s)	852, 2141
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MroXI	GAANNNNTTC	2 cut(s)	342, 950
MscI	TGGCCA	2 cut(s)	446, 1115
MseI	TTAA	8 cut(s)	750, 792, 870, 1022, 1131, 1449, 2034, 2076
MslI	CAYNNNNRTG	1 cut(s)	722
Msp20I	TGGCCA	2 cut(s)	446, 1115
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	2 cut(s)	8, 1835
MspR9I	CCNGG	2 cut(s)	581, 1378
Mva1269I	GAATGC	2 cut(s)	850, 1829
MvaI	CCWGG	2 cut(s)	581, 1378
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	1036
NaeI	GCCGGC	1 cut(s)	9
NdeI	CATATG	1 cut(s)	1002
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	8 cut(s)	184, 226, 535, 727, 850, 1586, 1871, 2143
NlaIV	GGNNCC	9 cut(s)	21, 81, 909, 953, 1038, 1367, 1755, 1839, 1968
NmeAIII	GCCGAG	3 cut(s)	56, 160, 1117
NmuCI	GTSAC	3 cut(s)	638, 975, 1510
NsiI	ATGCAT	2 cut(s)	852, 2141
NspI	RCATGY	3 cut(s)	226, 850, 2143
PaeI	GCATGC	2 cut(s)	850, 2143
PagI	TCATGA	1 cut(s)	1582
PasI	CCCWGGG	1 cut(s)	1377
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 114
PctI	GAATGC	2 cut(s)	850, 1829
PdiI	GCCGGC	1 cut(s)	9
PdmI	GAANNNNTTC	2 cut(s)	342, 950
PfeI	GAWTC	8 cut(s)	189, 266, 287, 566, 739, 787, 1156, 1627
PflFI	GACNNNGTC	2 cut(s)	34, 307
PkrI	GCNGC	4 cut(s)	6, 756, 916, 2125
PleI	GAGTC	2 cut(s)	143, 316
PpsI	GAGTC	2 cut(s)	143, 316
PpuMI	RGGWCCY	1 cut(s)	1966
Psp124BI	GAGCTC	1 cut(s)	141
Psp1406I	AACGTT	1 cut(s)	1346
Psp5II	RGGWCCY	1 cut(s)	1966
Psp6I	CCWGG	2 cut(s)	579, 1376
PspFI	CCCAGC	1 cut(s)	1056
PspGI	CCWGG	2 cut(s)	579, 1376
PspN4I	GGNNCC	9 cut(s)	21, 81, 909, 953, 1038, 1367, 1755, 1839, 1968
PspOMI	GGGCCC	1 cut(s)	1365
PspPI	GGNCC	5 cut(s)	79, 1245, 1365, 1366, 1966
PspPPI	RGGWCCY	1 cut(s)	1966
PsuI	RGATCY	5 cut(s)	203, 553, 776, 1422, 1477
PsyI	GACNNNGTC	2 cut(s)	34, 307
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	6 cut(s)	373, 421, 517, 964, 1087, 1195
RsaNI	GTAC	6 cut(s)	372, 420, 516, 963, 1086, 1194
RseI	CAYNNNNRTG	1 cut(s)	722
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	8 cut(s)	750, 792, 870, 1022, 1131, 1449, 2034, 2076
SatI	GCNGC	4 cut(s)	5, 755, 915, 2124
Sau96I	GGNCC	5 cut(s)	79, 1245, 1365, 1366, 1966
ScaI	AGTACT	1 cut(s)	1087
SchI	GAGTC	2 cut(s)	143, 317
ScrFI	CCNGG	2 cut(s)	581, 1378
SduI	GDGCHC	5 cut(s)	141, 1369, 1620, 1818, 2052
SfcI	CTRYAG	1 cut(s)	423
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	1966
SmiMI	CAYNNNNRTG	1 cut(s)	722
SphI	GCATGC	2 cut(s)	850, 2143
SsiI	CCGC	7 cut(s)	5, 83, 153, 242, 452, 754, 1066
SspMI	CTAG	4 cut(s)	186, 780, 1749, 1850
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	579, 1376
StyI	CCWWGG	1 cut(s)	1818
TaaI	ACNGT	4 cut(s)	214, 371, 675, 989
TaiI	ACGT	1 cut(s)	1349
TaqI	TCGA	8 cut(s)	41, 57, 93, 147, 311, 408, 1138, 1310
TaqII	GACCGA	2 cut(s)	29, 128
TatI	WGTACW	5 cut(s)	371, 419, 515, 1085, 1193
TauI	GCSGC	2 cut(s)	7, 757
TfiI	GAWTC	8 cut(s)	189, 266, 287, 566, 739, 787, 1156, 1627
Tru1I	TTAA	8 cut(s)	750, 792, 870, 1022, 1131, 1449, 2034, 2076
Tru9I	TTAA	8 cut(s)	750, 792, 870, 1022, 1131, 1449, 2034, 2076
TscAI	CASTG	6 cut(s)	454, 847, 984, 1398, 1789, 2052
TseFI	GTSAC	3 cut(s)	638, 975, 1510
TseI	GCWGC	2 cut(s)	914, 2123
Tsp45I	GTSAC	3 cut(s)	638, 975, 1510
TspDTI	ATGAA	9 cut(s)	88, 169, 548, 698, 846, 959, 1019, 1560, 1571
TspGWI	ACGGA	4 cut(s)	308, 365, 496, 1918
TspRI	CASTG	6 cut(s)	454, 847, 984, 1398, 1789, 2052
Tth111I	GACNNNGTC	2 cut(s)	34, 307
VneI	GTGCAC	1 cut(s)	2048
VpaK11BI	GGWCC	1 cut(s)	1966
XagI	CCTNNNNNAGG	1 cut(s)	1024
XapI	RAATTY	9 cut(s)	1043, 1119, 1220, 1430, 1526, 1703, 2018, 2060, 2152
XbaI	TCTAGA	1 cut(s)	779
XceI	RCATGY	3 cut(s)	226, 850, 2143
XmiI	GTMKAC	1 cut(s)	677
XmnI	GAANNNNTTC	2 cut(s)	342, 950
XspI	CTAG	4 cut(s)	186, 780, 1749, 1850
ZrmI	AGTACT	1 cut(s)	1087
Zsp2I	ATGCAT	2 cut(s)	852, 2141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.