Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Reverse (-)

20707953 .. 20708614

Gene Structure 662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25582.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCAGAAGACAACCACGAGTGCGGAAAACGCAGGAGGCAAGACGGCAACGTCGATGGCCTTGGTCTCACTGCCGGAATCGGGATGAAGATGCTGAAGAACATGGGCTACAAAGGAGGCGGTCTTGGCAAGAACGAACAGGGAATGCTCAACCCCATTCAACCCAAATTGAGGCCAAAGAATTTAGGCATGGGTTTCCACGATTACAAGGACACCAAAACCGACCTACCCAATTCGCAAGAAGCATTTGTTGAGGTCCAAAAGCCTCCACTCGCCAAGACTGACATGCCAATTTGGAAGAAGAACGTTATTAACAAGCAGCACAAGGATTTCTGTTTGGCGGAGTTCTTGGCCCAGAAGATGGAACAAGAACAGGGTGTTGTTGTTGATGAGCTTTCCAATTTGGACAATGAGATTAATGCTGTTTTGAACCGACTGAAGGAAGCAAATTACATGGGAGAATTGACATTGGAATCGCTGGCCGATGAGTTTGGTGACATTCGGAGGAGGTACACTGACGATTGGTTGGGATCCTCTGCAGAATCCTTGGCTTGGTTTCGACATTGTGTCCGCCTGGAAGGGTTTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

198

Amino Acids

22.23

Weight (kDa)

5.86

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	25 - 65	7e-13	G-patch domain
G-patch_2	PF12656	27 - 67	3e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	361
AciI	CCGC	4 cut(s)	24, 120, 341, 571
AclI	AACGTT	1 cut(s)	306
AclWI	GGATC	2 cut(s)	525, 538
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	2 cut(s)	116, 458
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	5 cut(s)	81, 171, 361, 439, 552
AgsI	TTSAA	2 cut(s)	161, 430
AhdI	GACNNNNNGTC	1 cut(s)	566
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	525, 538
AoxI	GGCC	4 cut(s)	58, 173, 351, 480
ApeKI	GCWGC	2 cut(s)	319, 587
ApoI	RAATTY	1 cut(s)	181
AseI	ATTAAT	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	256, 352
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	256
BamHI	GGATCC	1 cut(s)	530
BauI	CACGAG	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	331, 574
BccI	CCATC	2 cut(s)	50, 355
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	537
BisI	GCNGC	2 cut(s)	320, 588
BlsI	GCNGC	2 cut(s)	321, 589
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	256
BmeRI	GACNNNNNGTC	1 cut(s)	566
BmgT120I	GGNCC	2 cut(s)	256, 352
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	61, 546
Bsc4I	CCNNNNNNNGG	5 cut(s)	81, 171, 361, 439, 552
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	61, 546
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	5 cut(s)	81, 171, 361, 439, 552
BseRI	GAGGAG	1 cut(s)	520
BseXI	GCAGC	2 cut(s)	331, 574
BshFI	GGCC	4 cut(s)	60, 175, 353, 482
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	5 cut(s)	81, 171, 361, 439, 552
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	4 cut(s)	60, 175, 353, 482
Bso31I	GGTCTC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	530
BspACI	CCGC	4 cut(s)	24, 120, 341, 571
BspANI	GGCC	4 cut(s)	60, 175, 353, 482
BspLI	GGNNCC	1 cut(s)	532
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	2 cut(s)	525, 538
BspTNI	GGTCTC	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	61, 546
BssMI	GATC	1 cut(s)	530
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	61, 546
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	533
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 126
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	573
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	331, 574
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	4 cut(s)	60, 175, 353, 482
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 513
Cac8I	GCNNGC	1 cut(s)	480
Cfr13I	GGNCC	2 cut(s)	256, 352
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	5 cut(s)	103, 190, 286, 454, 591
CviJI	RGCY	8 cut(s)	60, 108, 175, 265, 353, 394, 482, 551
CviKI_1	RGCY	8 cut(s)	60, 108, 175, 265, 353, 394, 482, 551
CviQI	GTAC	1 cut(s)	511
DpnI	GATC	1 cut(s)	532
DpnII	GATC	1 cut(s)	530
DrdI	GACNNNNNNGTC	1 cut(s)	50
DriI	GACNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	480
Eam1105I	GACNNNNNGTC	1 cut(s)	566
EciI	GGCGGA	2 cut(s)	356, 560
Eco130I	CCWWGG	2 cut(s)	61, 546
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	116, 458
EcoRII	CCWGG	1 cut(s)	573
EcoT14I	CCWWGG	2 cut(s)	61, 546
ErhI	CCWWGG	2 cut(s)	61, 546
FaeI	CATG	5 cut(s)	106, 193, 289, 457, 594
FaiI	YATR	5 cut(s)	104, 191, 287, 455, 592
FatI	CATG	5 cut(s)	102, 189, 285, 453, 590
Fnu4HI	GCNGC	2 cut(s)	320, 588
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	2 cut(s)	320, 588
GluI	GCNGC	2 cut(s)	320, 588
HaeIII	GGCC	4 cut(s)	60, 175, 353, 482
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	5 cut(s)	106, 193, 289, 457, 594
HinfI	GANTC	3 cut(s)	78, 473, 542
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	1 cut(s)	504
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	513
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	433, 572
HpyCH4IV	ACGT	2 cut(s)	51, 306
HpyCH4V	TGCA	2 cut(s)	539, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 126
HpySE526I	ACGT	2 cut(s)	51, 306
Hsp92II	CATG	5 cut(s)	106, 193, 289, 457, 594
Kzo9I	GATC	1 cut(s)	530
LpnPI	CCDG	8 cut(s)	19, 88, 125, 359, 368, 464, 560, 587
Lsp1109I	GCAGC	2 cut(s)	331, 574
LweI	GCATC	1 cut(s)	81
MaeII	ACGT	2 cut(s)	51, 306
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	1 cut(s)	532
MboI	GATC	1 cut(s)	530
MboII	GAAGA	6 cut(s)	20, 100, 109, 310, 313, 370
MflI	RGATCY	1 cut(s)	530
MluCI	AATT	7 cut(s)	167, 181, 232, 291, 400, 448, 461
MnlI	CCTC	8 cut(s)	30, 110, 165, 247, 276, 498, 501, 544
MseI	TTAA	2 cut(s)	312, 417
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	575
Mva1269I	GAATGC	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	2 cut(s)	30, 126
NdeII	GATC	1 cut(s)	530
NlaIII	CATG	5 cut(s)	106, 193, 289, 457, 594
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	150
PfeI	GAWTC	3 cut(s)	78, 473, 542
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	321, 589
PshBI	ATTAAT	1 cut(s)	417
Psp1406I	AACGTT	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	2 cut(s)	256, 352
PsrI	GAACNNNNNNTAC	2 cut(s)	92, 124
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
SaqAI	TTAA	2 cut(s)	312, 417
SatI	GCNGC	2 cut(s)	320, 588
Sau3AI	GATC	1 cut(s)	530
Sau96I	GGNCC	2 cut(s)	256, 352
ScrFI	CCNGG	1 cut(s)	575
SetI	ASST	6 cut(s)	54, 228, 258, 309, 396, 512
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	7 cut(s)	167, 181, 232, 291, 400, 448, 461
SsiI	CCGC	4 cut(s)	24, 120, 341, 571
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	2 cut(s)	61, 546
TaiI	ACGT	2 cut(s)	54, 309
TaqI	TCGA	2 cut(s)	54, 559
TasI	AATT	7 cut(s)	167, 181, 232, 291, 400, 448, 461
TfiI	GAWTC	3 cut(s)	78, 473, 542
Tru1I	TTAA	2 cut(s)	312, 417
Tru9I	TTAA	2 cut(s)	312, 417
TscAI	CASTG	2 cut(s)	76, 520
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	2 cut(s)	319, 587
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	76, 520
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	256
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.