Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Reverse (-)

32945858 .. 32948509

Gene Structure 2652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002370

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGGATGATTATCAGGAGATGGAGAGGTTCGGAATGGAGAACGATTACGAGGACGGCCAGTGGATCGGTGGCGAGTTCTATTACCGAAACCGCAAGAGTAAGCGCGTGCAGACCAAAGACGATGCTCTCTACGGCTCGTTCGCCGATTCCGATGACGATGAAGACGACGGCTCCAGGAAACGCCGCAAAGAGCGAAAGGCCGACTTCACAAAGCCCGTCAGTTTTGTCTCCACCGGCGTCGTCGTCCCCAACCAGGAAGCCGAGAATGATTTAAAGCAGCAGAGCGATGATAGTAGGCCTGATATTGATCCTTCTGCTACTTCAGGTTCTGGTCTAGGCTTCAATAATTCTGGTTTAGGATTCGGTAATGCTGGTGGTTTAGGATTCGGTAATTCCGGTGGTTTAGGATTTAGTAATTCTGGTGGTTTAGGATTCAATCATCCAGTAGGCAATGATGATGAGGAAGATGACAGCAGTTTTCTGCCGTCGGCGTTCGGGAAGAAGATAAAGGAGGGAGCTGAGAGGAGACACAAAGAGAAAGAAAAGATGAAATTGCAGCAGCAGAGTAGTCGGTCTCGAAGAGATTTGGAATCTAAAGGAGCAATCAGCGGCGGGGATGGGGATTTGGGGGCCTTTGAGAAACACACAAAAGGCATTGGAATGAAGATGCTTGCAAAAATGGGATACAAAGGAGGTGGTCTTGGGAAGAACCAGCAAGGAATTCTTGCCCCCATTGAAGCCAAGTTGAGGCCAAAAAACATGGGTATGGGTTTTAATGATTACAAGGAAACCAAACAGCCCAGTGTGCAAGAATTGGATGAGGAAAAGCCCAAGAAGCAGTTGCCGGCTGCTACTGCCACCACCAAAAAGAGGAATTCCTGGAAGAAGATGGTTGCCGGCAGGACTAACAAGGAGCGGTATATATCTGCCAAGGAGTTTTTAGCCAAGAAAGAAGAAGAAGGTGCCGAGGTCTTTGTGCAGAAGGTGGTTGATATGCGGGGACCTCAAGTACGAGTTTTGACCAATTTGGAGAATTTGAATGCTGAGGAGAAGGCTAGGGAAGAAAATGTTCCCATGCCTGAGCTACAGCACAACTTGAGGTTGATTCTTGACATGGCTGAGCTTGACATCCAAAAGATTGATAGGGATTTGAGGAATGAGAGAGAGACTGCTATAAGCTTGAACCAGGAGAAAGAGAGATTGCAAGCTGAGGTGACTATGCAGAAGCAGCACTTGGATAGCTTGGATGATATCACAACTGTGTTGGACCGACTGGGAGAAGAGAAAGCCATGGGAATATTGACGCTGGATTCTCTGGCAAAGGGTTTCAGTGACCTGCAGAGGAGGTATGCCAATGACTACAAGTTATGTAACTTGGCTTGCATTGCCTGTTCCTTTGCTCTCCCTTTGTTTATCAGGATGTTTCAAGGTTGGGATCCTCTTCGGAACCCCTCTCATGGAATGGACGTGGTATCCACCTGGAAGGCTTTGCTTCATGGGGAGGGGGAGTATGAGCGGTGCCTTGATATATGGGATTCTTCAATGTCTCCTTATACCCAATTGGTTTCCGAGGTTGTGGTACCAGCTGTGAGGATTGCTGGAGTAAATACTTGGCAGCCTAAGGACCCTGAACCCATGCTTCGTTTTTTGGAGTCTTGGGAGAAATTGCTGCCGGCTCCTGTTCTTAATAGCATATTGGATATGGTAGTCTTCCCCAAATTGAAGGAGGCAGTCGACTTTTGGGAACCTCACCGGGACACAGTTCCCATCCATGTCTGGGTGCATCCATGGCTACCACTATTAGGACACAAGTTGGAGGAGGTGTACCACACAATACGCTACAAGTTGAGTAATGTTCTAGGTGCATGGCACCCCAGTGATGGATCTGCTTATACGATTCTCTCTCCTTGGAAAAAGGTTTTCGATTCTGCAAGTTGGGAACAGCTAATGCATCGATTTATAGTACCCAAATTGCAGCTTGTTTTGCAAGACTTCCAAGTAAACCCTGCAGATCAGAGACTTGATCAGTTTAATTGGGTCATGAGTTGGGCTTCTGCTATTCCAATTCATTTAATGGTAGATATGTTGGAGAAGTTTTTCTTCCCCAAGTGGCTACATGTTTTATATCACTGGTTAATATCAAACCCGAACTTTGAAGAGGTTTTGAACTGGTATAAAGGTTGGAAGGAACTTATATCTGAAGAGCTTCACGCAAATGAAAGTATCCGCTATCAGCTTAATTGTGGCCTTGACATGATGAATCGTGCTGTTGAGGGTATGGAGGTGGTTCAACCTGGTTTGAAAGAGAATATTAGCTACCTCAGGGTGCTTGAGCAAAGGCAATTTGAGGCACAGCAAAAAGCAGCAGCAGCCCATGCAAATTTGGGTGGCGCAGCCCATATGGATGGCGGTGGTCACGAGATGACCCTGAAGGATGTTATTGAAGCCCATGCACAGCAGAATGGGTTGCTATTTAGGCCTAAGCCTACTAGGACGCATAATGGCCACCAGATATATGGGTTTGGTAATGTAAGCATAATAGTTGACTCTCTAAATCAAAAGGTGTATGCCCAAACAGAGGACACGTGGTCCCTTGTATCCCTTGAGAAGTTGCTTGACCTGCACAATACTTCTCTTACAAGAAGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

884

Amino Acids

100.3

Weight (kDa)

5.89

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP_N	PF12457	2 - 97	1.3e-21	Tuftelin interacting protein N terminal
G-patch	PF01585	216 - 257	1.5e-14	G-patch domain
GCFC	PF07842	436 - 708	3.1e-91	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1344, 2628
Acc65I	GGTACC	1 cut(s)	1579
AccB1I	GGYRCC	4 cut(s)	962, 1518, 1579, 1869
AccBSI	CCGCTC	2 cut(s)	916, 1516
AccI	GTMKAC	1 cut(s)	1734
AccII	CGCG	1 cut(s)	105
AciI	CCGC	9 cut(s)	91, 184, 609, 612, 916, 997, 1516, 2227, 2409
AclWI	GGATC	5 cut(s)	71, 302, 1430, 1443, 1891
AcoI	YGGCCR	2 cut(s)	55, 2503
AcsI	RAATTY	4 cut(s)	720, 874, 1033, 2380
AcuI	CTGAAG	3 cut(s)	306, 2220, 2450
AcvI	CACGTG	1 cut(s)	2586
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	4 cut(s)	1011, 1581, 1826, 1965
AfiI	CCNNNNNNNGG	8 cut(s)	253, 747, 870, 1457, 1777, 1802, 1880, 2578
AflIII	ACRYGT	2 cut(s)	2116, 2583
AhdI	GACNNNNNGTC	1 cut(s)	2587
AjiI	CACGTC	1 cut(s)	1468
AjnI	CCWGG	6 cut(s)	173, 252, 878, 1185, 1478, 2293
AjuI	GAANNNNNNNTTGG	2 cut(s)	1217, 1249
AleI	CACNNNNGTG	2 cut(s)	1259, 1875
Alw26I	GTCTC	6 cut(s)	232, 520, 579, 1160, 1551, 2011
AlwI	GGATC	5 cut(s)	71, 302, 1430, 1443, 1891
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	8 cut(s)	55, 198, 296, 630, 749, 2245, 2477, 2503
ApoI	RAATTY	4 cut(s)	720, 874, 1033, 2380
Asp700I	GAANNNNTTC	3 cut(s)	1068, 2096, 2205
Asp718I	GGTACC	1 cut(s)	1579
AspLEI	GCGC	2 cut(s)	105, 2393
AspS9I	GGNCC	5 cut(s)	630, 1001, 1267, 1624, 2589
AsuC2I	CCSGG	1 cut(s)	1754
AsuHPI	GGTGA	2 cut(s)	1225, 1742
AvaII	GGWCC	4 cut(s)	1001, 1267, 1624, 2589
AxyI	CCTNAGG	2 cut(s)	1620, 2321
BalI	TGGCCA	1 cut(s)	2505
BamHI	GGATCC	1 cut(s)	1435
BanI	GGYRCC	4 cut(s)	962, 1518, 1579, 1869
BauI	CACGAG	1 cut(s)	2417
BbrPI	CACGTG	1 cut(s)	2586
BbsI	GAAGAC	2 cut(s)	168, 1702
BbvCI	CCTCAGC	2 cut(s)	1044, 1209
BccI	CCATC	6 cut(s)	13, 611, 883, 1775, 1874, 2399
BceAI	ACGGC	4 cut(s)	70, 148, 184, 469
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BciT130I	CCWGG	6 cut(s)	175, 254, 880, 1187, 1480, 2295
BciVI	GTATCC	4 cut(s)	677, 1483, 2234, 2608
BclI	TGATCA	1 cut(s)	2023
BcnI	CCSGG	1 cut(s)	1754
BcoDI	GTCTC	6 cut(s)	232, 520, 579, 1160, 1551, 2011
BfaI	CTAG	4 cut(s)	335, 1056, 1859, 2490
BfmI	CTRYAG	3 cut(s)	1085, 1337, 2007
BfuAI	ACCTGC	2 cut(s)	1344, 2628
BfuI	GTATCC	4 cut(s)	677, 1483, 2234, 2608
BlpI	GCTNAGC	1 cut(s)	1119
Bme1390I	CCNGG	7 cut(s)	175, 254, 880, 1187, 1480, 1754, 2295
Bme18I	GGWCC	4 cut(s)	1001, 1267, 1624, 2589
BmeRI	GACNNNNNGTC	1 cut(s)	2587
BmgBI	CACGTC	1 cut(s)	1468
BmgT120I	GGNCC	5 cut(s)	630, 1001, 1267, 1624, 2589
BmrFI	CCNGG	7 cut(s)	175, 254, 880, 1187, 1480, 1754, 2295
BmrI	ACTGGG	3 cut(s)	795, 1283, 1869
BmsI	GCATC	4 cut(s)	112, 657, 1792, 1960
BmuI	ACTGGG	3 cut(s)	795, 1283, 1869
BpiI	GAAGAC	2 cut(s)	168, 1702
BpmI	CTGGAG	2 cut(s)	157, 1620
Bpu10I	CCTNAGC	4 cut(s)	1044, 1080, 1209, 2481
Bpu1102I	GCTNAGC	1 cut(s)	1119
BpuEI	CTTGAG	4 cut(s)	990, 1117, 2351, 2624
BpuMI	CCSGG	1 cut(s)	1754
Bsa29I	ATCGAT	1 cut(s)	1954
BsaAI	YACGTR	1 cut(s)	2586
BsaBI	GATNNNNATC	2 cut(s)	9, 306
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	579
BsaJI	CCNNGG	6 cut(s)	930, 966, 1290, 1569, 1787, 1907
BsaWI	WCCGGW	1 cut(s)	395
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 185, 1493, 1523, 1808, 1838
Bsc4I	CCNNNNNNNGG	8 cut(s)	253, 747, 870, 1457, 1777, 1802, 1880, 2578
Bse118I	RCCGGY	4 cut(s)	233, 844, 896, 1672
Bse1I	ACTGG	7 cut(s)	58, 443, 801, 1278, 1875, 2135, 2174
Bse21I	CCTNAGG	2 cut(s)	1620, 2321
Bse3DI	GCAATG	2 cut(s)	457, 1383
Bse8I	GATNNNNATC	2 cut(s)	9, 306
BseBI	CCWGG	6 cut(s)	175, 254, 880, 1187, 1480, 2295
BseCI	ATCGAT	1 cut(s)	1954
BseDI	CCNNGG	6 cut(s)	930, 966, 1290, 1569, 1787, 1907
BseJI	GATNNNNATC	2 cut(s)	9, 306
BseLI	CCNNNNNNNGG	8 cut(s)	253, 747, 870, 1457, 1777, 1802, 1880, 2578
BseMI	GCAATG	2 cut(s)	457, 1383
BseMII	CTCAG	6 cut(s)	510, 1035, 1071, 1110, 1200, 2335
BseNI	ACTGG	7 cut(s)	58, 443, 801, 1278, 1875, 2135, 2174
BseRI	GAGGAG	4 cut(s)	538, 1061, 1357, 1832
BsgI	GTGCAG	3 cut(s)	128, 998, 2606
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	8 cut(s)	57, 200, 298, 632, 751, 2247, 2479, 2505
BshNI	GGYRCC	4 cut(s)	962, 1518, 1579, 1869
BshVI	ATCGAT	1 cut(s)	1954
BsiSI	CCGG	6 cut(s)	234, 396, 845, 897, 1673, 1753
BslFI	GGGAC	4 cut(s)	230, 1014, 1769, 2575
BslI	CCNNNNNNNGG	8 cut(s)	253, 747, 870, 1457, 1777, 1802, 1880, 2578
BsmAI	GTCTC	6 cut(s)	232, 520, 579, 1160, 1551, 2011
BsmFI	GGGAC	4 cut(s)	230, 1014, 1769, 2575
BsmI	GAATGC	1 cut(s)	1045
BsnI	GGCC	8 cut(s)	57, 200, 298, 632, 751, 2247, 2479, 2505
Bso31I	GGTCTC	1 cut(s)	579
Bsp143I	GATC	6 cut(s)	63, 307, 1435, 1883, 2011, 2023
Bsp1720I	GCTNAGC	1 cut(s)	1119
Bsp19I	CCATGG	2 cut(s)	1290, 1787
BspACI	CCGC	9 cut(s)	91, 184, 609, 612, 916, 997, 1516, 2227, 2409
BspANI	GGCC	8 cut(s)	57, 200, 298, 632, 751, 2247, 2479, 2505
BspCNI	CTCAG	6 cut(s)	511, 1036, 1072, 1111, 1201, 2334
BspDI	ATCGAT	1 cut(s)	1954
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	2040
BspMAI	CTGCAG	2 cut(s)	1341, 2011
BspMI	ACCTGC	2 cut(s)	1344, 2628
BspPI	GGATC	5 cut(s)	71, 302, 1430, 1443, 1891
BspQI	GCTCTTC	1 cut(s)	2196
BspT107I	GGYRCC	4 cut(s)	962, 1518, 1579, 1869
BspTNI	GGTCTC	1 cut(s)	579
BsrBI	CCGCTC	2 cut(s)	916, 1516
BsrDI	GCAATG	2 cut(s)	457, 1383
BsrFI	RCCGGY	4 cut(s)	233, 844, 896, 1672
BsrI	ACTGG	7 cut(s)	58, 443, 801, 1278, 1875, 2135, 2174
BssAI	RCCGGY	4 cut(s)	233, 844, 896, 1672
BssECI	CCNNGG	6 cut(s)	930, 966, 1290, 1569, 1787, 1907
BssMI	GATC	6 cut(s)	63, 307, 1435, 1883, 2011, 2023
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	2417
BssT1I	CCWWGG	4 cut(s)	930, 1290, 1787, 1907
Bst2BI	CACGAG	1 cut(s)	2417
Bst2UI	CCWGG	6 cut(s)	175, 254, 880, 1187, 1480, 2295
Bst4CI	ACNGT	2 cut(s)	1261, 1762
Bst6I	CTCTTC	5 cut(s)	574, 1275, 1446, 2151, 2196
BstACI	GRCGYC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	2375
BstBAI	YACGTR	1 cut(s)	2586
BstC8I	GCNNGC	7 cut(s)	107, 672, 846, 898, 1206, 1381, 1674
BstDEI	CTNAG	8 cut(s)	519, 1044, 1080, 1119, 1209, 1620, 2321, 2481
BstDSI	CCRYGG	2 cut(s)	1290, 1787
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	105, 2393
BstKTI	GATC	6 cut(s)	66, 310, 1438, 1886, 2014, 2026
BstMAI	GTCTC	6 cut(s)	232, 520, 579, 1160, 1551, 2011
BstMBI	GATC	6 cut(s)	63, 307, 1435, 1883, 2011, 2023
BstNI	CCWGG	6 cut(s)	175, 254, 880, 1187, 1480, 2295
BstNSI	RCATGY	1 cut(s)	2120
BstSCI	CCNGG	7 cut(s)	173, 252, 878, 1185, 1478, 1752, 2293
BstSFI	CTRYAG	3 cut(s)	1085, 1337, 2007
BstUI	CGCG	1 cut(s)	105
BstV2I	GAAGAC	2 cut(s)	168, 1702
BstX2I	RGATCY	2 cut(s)	1435, 1883
BstXI	CCANNNNNNTGG	2 cut(s)	2405, 2516
BstYI	RGATCY	2 cut(s)	1435, 1883
Bsu15I	ATCGAT	1 cut(s)	1954
Bsu36I	CCTNAGG	2 cut(s)	1620, 2321
BsuI	GTATCC	4 cut(s)	677, 1483, 2234, 2608
BsuRI	GGCC	8 cut(s)	57, 200, 298, 632, 751, 2247, 2479, 2505
BsuTUI	ATCGAT	1 cut(s)	1954
BtgI	CCRYGG	2 cut(s)	1290, 1787
BtgZI	GCGATG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	1468
BtsIMutI	CAGTG	5 cut(s)	65, 808, 1336, 1882, 2128
BveI	ACCTGC	2 cut(s)	1344, 2628
Cac8I	GCNNGC	7 cut(s)	107, 672, 846, 898, 1206, 1381, 1674
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	2040
CfoI	GCGC	2 cut(s)	105, 2393
Cfr10I	RCCGGY	4 cut(s)	233, 844, 896, 1672
Cfr13I	GGNCC	5 cut(s)	630, 1001, 1267, 1624, 2589
ClaI	ATCGAT	1 cut(s)	1954
CseI	GACGC	3 cut(s)	226, 1312, 2503
CsiI	ACCWGGT	1 cut(s)	2293
Csp6I	GTAC	4 cut(s)	1010, 1580, 1825, 1964
CspCI	CAANNNNNGTGG	2 cut(s)	676, 711
CviQI	GTAC	4 cut(s)	1010, 1580, 1825, 1964
DdeI	CTNAG	8 cut(s)	519, 1044, 1080, 1119, 1209, 1620, 2321, 2481
DpnI	GATC	6 cut(s)	65, 309, 1437, 1885, 2013, 2025
DpnII	GATC	6 cut(s)	63, 307, 1435, 1883, 2011, 2023
DraI	TTTAAA	1 cut(s)	273
DriI	GACNNNNNGTC	1 cut(s)	2587
EaeI	YGGCCR	2 cut(s)	55, 2503
Eam1104I	CTCTTC	5 cut(s)	574, 1275, 1446, 2151, 2196
Eam1105I	GACNNNNNGTC	1 cut(s)	2587
EarI	CTCTTC	5 cut(s)	574, 1275, 1446, 2151, 2196
Eco130I	CCWWGG	4 cut(s)	930, 1290, 1787, 1907
Eco147I	AGGCCT	2 cut(s)	298, 2479
Eco31I	GGTCTC	1 cut(s)	579
Eco32I	GATATC	1 cut(s)	1252
Eco47I	GGWCC	4 cut(s)	1001, 1267, 1624, 2589
Eco57I	CTGAAG	3 cut(s)	306, 2220, 2450
Eco72I	CACGTG	1 cut(s)	2586
Eco81I	CCTNAGG	2 cut(s)	1620, 2321
EcoO109I	RGGNCCY	3 cut(s)	630, 1001, 1624
EcoRI	GAATTC	2 cut(s)	720, 874
EcoRII	CCWGG	6 cut(s)	173, 252, 878, 1185, 1478, 2293
EcoRV	GATATC	1 cut(s)	1252
EcoT14I	CCWWGG	4 cut(s)	930, 1290, 1787, 1907
EcoT22I	ATGCAT	1 cut(s)	1953
ErhI	CCWWGG	4 cut(s)	930, 1290, 1787, 1907
FalI	AAGNNNNNCTT	8 cut(s)	188, 220, 708, 740, 1217, 1249, 2084, 2116
FaqI	GGGAC	4 cut(s)	230, 1014, 1769, 2575
FauI	CCCGC	2 cut(s)	605, 990
FauNDI	CATATG	1 cut(s)	2400
FbaI	TGATCA	1 cut(s)	2023
FblI	GTMKAC	1 cut(s)	1734
FspBI	CTAG	4 cut(s)	335, 1056, 1859, 2490
GlaI	GCGC	2 cut(s)	104, 2392
GsuI	CTGGAG	2 cut(s)	157, 1620
HaeIII	GGCC	8 cut(s)	57, 200, 298, 632, 751, 2247, 2479, 2505
HapII	CCGG	6 cut(s)	234, 396, 845, 897, 1673, 1753
HgaI	GACGC	3 cut(s)	226, 1312, 2503
HhaI	GCGC	2 cut(s)	105, 2393
Hin1I	GRCGYC	1 cut(s)	237
Hin6I	GCGC	2 cut(s)	103, 2391
HinP1I	GCGC	2 cut(s)	103, 2391
HincII	GTYRAC	2 cut(s)	1735, 2545
HindII	GTYRAC	2 cut(s)	1735, 2545
HindIII	AAGCTT	1 cut(s)	1177
HpaII	CCGG	6 cut(s)	234, 396, 845, 897, 1673, 1753
HphI	GGTGA	2 cut(s)	1225, 1742
Hpy166II	GTNNAC	4 cut(s)	1735, 1825, 2002, 2545
Hpy188I	TCNGA	6 cut(s)	32, 151, 1446, 1570, 2016, 2200
Hpy188III	TCNNGA	7 cut(s)	14, 496, 576, 1109, 1417, 2041, 2417
Hpy8I	GTNNAC	4 cut(s)	1735, 1825, 2002, 2545
Hpy99I	CGWCG	4 cut(s)	170, 242, 245, 490
HpyAV	CCTTC	8 cut(s)	321, 953, 976, 1045, 1477, 1717, 2179, 2425
HpyCH4III	ACNGT	2 cut(s)	1261, 1762
HpyCH4IV	ACGT	2 cut(s)	1467, 2585
HpyF3I	CTNAG	8 cut(s)	519, 1044, 1080, 1119, 1209, 1620, 2321, 2481
HpySE526I	ACGT	2 cut(s)	1467, 2585
Hsp92I	GRCGYC	1 cut(s)	237
HspAI	GCGC	2 cut(s)	103, 2391
KpnI	GGTACC	1 cut(s)	1583
KroI	GCCGGC	3 cut(s)	844, 896, 1672
KroNI	GCCGGC	3 cut(s)	846, 898, 1674
Ksp22I	TGATCA	1 cut(s)	2023
Kzo9I	GATC	6 cut(s)	63, 307, 1435, 1883, 2011, 2023
LguI	GCTCTTC	1 cut(s)	2196
LmnI	GCTCC	5 cut(s)	176, 515, 599, 913, 1681
LweI	GCATC	4 cut(s)	112, 657, 1792, 1960
MabI	ACCWGGT	1 cut(s)	2293
MaeI	CTAG	4 cut(s)	335, 1056, 1859, 2490
MaeII	ACGT	2 cut(s)	1467, 2585
MaeIII	GTNAC	4 cut(s)	1213, 1331, 1370, 2414
MalI	GATC	6 cut(s)	65, 309, 1437, 1885, 2013, 2025
MbiI	CCGCTC	2 cut(s)	916, 1516
MboI	GATC	6 cut(s)	63, 307, 1435, 1883, 2011, 2023
MfeI	CAATTG	1 cut(s)	1559
MflI	RGATCY	2 cut(s)	1435, 1883
MlsI	TGGCCA	1 cut(s)	2505
MluNI	TGGCCA	1 cut(s)	2505
MlyI	GAGTC	2 cut(s)	1661, 2540
MmeI	TCCRAC	4 cut(s)	1245, 1794, 2067, 2162
Mox20I	TGGCCA	1 cut(s)	2505
Mph1103I	ATGCAT	1 cut(s)	1953
MroNI	GCCGGC	3 cut(s)	844, 896, 1672
MroXI	GAANNNNTTC	3 cut(s)	1068, 2096, 2205
MscI	TGGCCA	1 cut(s)	2505
MseI	TTAA	7 cut(s)	272, 774, 1686, 2031, 2072, 2135, 2238
MslI	CAYNNNNRTG	6 cut(s)	659, 764, 1259, 1875, 2214, 2403
Msp20I	TGGCCA	1 cut(s)	2505
MspA1I	CMGCKG	2 cut(s)	609, 1586
MspI	CCGG	6 cut(s)	234, 396, 845, 897, 1673, 1753
MspR9I	CCNGG	7 cut(s)	175, 254, 880, 1187, 1480, 1754, 2295
MunI	CAATTG	1 cut(s)	1559
Mva1269I	GAATGC	1 cut(s)	1045
MvaI	CCWGG	6 cut(s)	175, 254, 880, 1187, 1480, 2295
MvnI	CGCG	1 cut(s)	105
NaeI	GCCGGC	3 cut(s)	846, 898, 1674
NciI	CCSGG	1 cut(s)	1754
NcoI	CCATGG	2 cut(s)	1290, 1787
NdeI	CATATG	1 cut(s)	2400
NdeII	GATC	6 cut(s)	63, 307, 1435, 1883, 2011, 2023
NgoMIV	GCCGGC	3 cut(s)	844, 896, 1672
NmeAIII	GCCGAG	2 cut(s)	286, 991
NmuCI	GTSAC	3 cut(s)	1213, 1331, 2414
NsiI	ATGCAT	1 cut(s)	1953
NspI	RCATGY	1 cut(s)	2120
OliI	CACNNNNGTG	2 cut(s)	1259, 1875
PagI	TCATGA	1 cut(s)	2040
PceI	AGGCCT	2 cut(s)	298, 2479
PciI	ACATGT	1 cut(s)	2116
PciSI	GCTCTTC	1 cut(s)	2196
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 162
PctI	GAATGC	1 cut(s)	1045
PdiI	GCCGGC	3 cut(s)	846, 898, 1674
PdmI	GAANNNNTTC	3 cut(s)	1068, 2096, 2205
PfoI	TCCNGGA	2 cut(s)	173, 878
PleI	GAGTC	2 cut(s)	1660, 2540
PmaCI	CACGTG	1 cut(s)	2586
PmlI	CACGTG	1 cut(s)	2586
PpsI	GAGTC	2 cut(s)	1660, 2540
Ppu21I	YACGTR	1 cut(s)	2586
PpuMI	RGGWCCY	2 cut(s)	1001, 1624
PscI	ACATGT	1 cut(s)	2116
Psp5II	RGGWCCY	2 cut(s)	1001, 1624
Psp6I	CCWGG	6 cut(s)	173, 252, 878, 1185, 1478, 2293
PspCI	CACGTG	1 cut(s)	2586
PspGI	CCWGG	6 cut(s)	173, 252, 878, 1185, 1478, 2293
PspPI	GGNCC	5 cut(s)	630, 1001, 1267, 1624, 2589
PspPPI	RGGWCCY	2 cut(s)	1001, 1624
PstI	CTGCAG	2 cut(s)	1341, 2011
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	1435, 1883
PvuII	CAGCTG	1 cut(s)	1586
RsaI	GTAC	4 cut(s)	1011, 1581, 1826, 1965
RsaNI	GTAC	4 cut(s)	1010, 1580, 1825, 1964
RseI	CAYNNNNRTG	6 cut(s)	659, 764, 1259, 1875, 2214, 2403
SalI	GTCGAC	1 cut(s)	1733
SapI	GCTCTTC	1 cut(s)	2196
SaqAI	TTAA	7 cut(s)	272, 774, 1686, 2031, 2072, 2135, 2238
Sau3AI	GATC	6 cut(s)	63, 307, 1435, 1883, 2011, 2023
Sau96I	GGNCC	5 cut(s)	630, 1001, 1267, 1624, 2589
SchI	GAGTC	2 cut(s)	1661, 2540
ScrFI	CCNGG	7 cut(s)	175, 254, 880, 1187, 1480, 1754, 2295
SexAI	ACCWGGT	1 cut(s)	2293
SfaNI	GCATC	4 cut(s)	112, 657, 1792, 1960
SfcI	CTRYAG	3 cut(s)	1085, 1337, 2007
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	4 cut(s)	1001, 1267, 1624, 2589
SmiMI	CAYNNNNRTG	6 cut(s)	659, 764, 1259, 1875, 2214, 2403
SmlI	CTYRAG	4 cut(s)	1005, 1096, 2330, 2603
SmoI	CTYRAG	4 cut(s)	1005, 1096, 2330, 2603
SseBI	AGGCCT	2 cut(s)	298, 2479
SsiI	CCGC	9 cut(s)	91, 184, 609, 612, 916, 997, 1516, 2227, 2409
SspI	AATATT	2 cut(s)	1299, 2311
SspMI	CTAG	4 cut(s)	335, 1056, 1859, 2490
StuI	AGGCCT	2 cut(s)	298, 2479
StyD4I	CCNGG	7 cut(s)	173, 252, 878, 1185, 1478, 1752, 2293
StyI	CCWWGG	4 cut(s)	930, 1290, 1787, 1907
TaaI	ACNGT	2 cut(s)	1261, 1762
TaiI	ACGT	2 cut(s)	1470, 2588
TaqI	TCGA	4 cut(s)	577, 1734, 1923, 1954
TaqII	GACCGA	2 cut(s)	561, 1284
TauI	GCSGC	2 cut(s)	186, 612
Tru1I	TTAA	7 cut(s)	272, 774, 1686, 2031, 2072, 2135, 2238
Tru9I	TTAA	7 cut(s)	272, 774, 1686, 2031, 2072, 2135, 2238
TscAI	CASTG	5 cut(s)	65, 808, 1336, 1882, 2135
TseFI	GTSAC	3 cut(s)	1213, 1331, 2414
Tsp45I	GTSAC	3 cut(s)	1213, 1331, 2414
TspDTI	ATGAA	7 cut(s)	174, 563, 677, 1484, 2057, 2232, 2273
TspRI	CASTG	5 cut(s)	65, 808, 1336, 1882, 2135
VpaK11BI	GGWCC	4 cut(s)	1001, 1267, 1624, 2589
XapI	RAATTY	4 cut(s)	720, 874, 1033, 2380
XceI	RCATGY	1 cut(s)	2120
XcmI	CCANNNNNNNNNTGG	2 cut(s)	65, 2513
XmiI	GTMKAC	1 cut(s)	1734
XmnI	GAANNNNTTC	3 cut(s)	1068, 2096, 2205
XspI	CTAG	4 cut(s)	335, 1056, 1859, 2490
Zsp2I	ATGCAT	1 cut(s)	1953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.