Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Forward (+)

57782735 .. 57785125

Gene Structure 2391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG346700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGGAGAGGTTTGGAATGGAGAACGATTACGAGGACGGCCAATGGATCGACGGCGAGTTCTTCTACCGTAAGCGCAAGGAGAGACGCGTACAGTCCAAAGACGATGCCCTGTACGGCTACTCCGATGAAGAAGATGAAGAATATTCAGACGGATCCAGAAAACGCAGGAAGAAAGATCGCTACGTCGACTACACCAAGCCCATTAAATTTGTCTCCACTGAAAAGCTGGACAACAATTCCGATCAGAAGAAAACTGATCACGGCACTCCTGTCATTGGCTTTAACTCGACTGGCATGCGCGATGAAGCTGAAGATGATGATGGTGATGGTTTTCTGGCGACAGAGTTTGGGAGGAAGATAAAGGACGGAGCTGAGAGGAGACGTAAGAAGAAGGAAAAGCTGAAATTCAAGAATGAGATTAGAAAATGTGATGGAGATGAAGGAGGCATTGGGGATTTCGAGAAACACACCAAGGGCATAGGAAGGAAGATGTTTGAGAAGATGGGGTACACAGGAGGTGGACTCGGGAAGAATCAGCAAGGCATTGTGAGCCCTATTGAGGTAAAGTTGAGGCCGAAAAATATGGGCATGGGTTTCAATGACTACAAGGAAACAGAAACCAAGCTCCAGAGTTTGCTAGAAGACAAACCTAACAAGCCTACAACCTTAAAACAGAAGCCTTCTTGGAAGAAGAAGAAGAGGACTAGCAAGGAGCATTATCTCTCTGCCGAGGAGTTTATAGCCAAGAAGCAGGAAGAGAGTGATTCCAGTCTTTTTGTTCACAATGTCATTGATATGCGCGGACCTCAAGTTCGAGTGTTGAGCAATTTGGACGATTTGAATGAGCGAGAGGAAGATACAGAAGATGAAGGTGCTTTCATGCCGGAGCTACAGCACAATTTGAAGTTGCTTGTGGACTTGGCTGAGCTCGATATCATGAAACTTGATAGGGATTGGAGGTATGAGAGGGAGGCAGTAATTAGATTGAAGAATGAGAAAGAGAGGTTGGAGCTTGAGGAGGCGAGGCAGAAGCAACATTTGGATAGTATGGAGAGTATTCAGACTGTGTTGGACCAACTGGAGGAAGAGAAATCCATGGGAACATTGACGCTGGACTCGCTTGCAAATAGCTTTGGTGAGCTGAAGAGACGGTATGCAGATGAGTATAAGTTGTGTAAGTTGTCATGCATTGCTTGTTCCTTTGCTCTGCCTTTGTTTATGAGTACTATTCAAGGTTGGGATGAACTGCAGTATCCTTTGTATGGCTTGGATGTCGTGTCCTCCTGGAAGGCTTTGCTTCATGGAGAGGGAAATAAGTGTTCAACATCATCGCCTTATGCGCAGTTGGTTTTTGAGATTGTGAGGATTTCTGGTGCAGATAATTGGCAGGCCAAGGATCCTGAACCCATGCTTCGGTTTTTAGAGGCTTGGGAGAAGCTGCTGCCCCCTTGTGTCCTTAATGACATATTGGATCTTTTAGTGTTGCCTAAGTTGAAGGATGCAGTTGGTGTTTGGGAACCATGCCGCGACACTCTTCCCATCCATGTATGGGTGCATCCATGGCTACCATTAATGGGACACAGATTGGAGGAGTTGTATCCAACAATACGTTTCAAGTTGGGTAATGTTCTCAGTGCTTGGCACCCAAGCGACGCGTCTGCTTATGCCATACTCTCGCCGTGGAAGAATGTATTTGATTCTGCAAGTTGGAAACAACTTATGCATAGGTTCATAGTTCCCAAGTTGCAGCTTGTCCTAGAAGAGTTCCATGTGAACCCTGCAAACCAGAGTGTTGATCAGTTCAATTGGGTCATGAGGTGGGCTTATGTTATTCCCAGTCATATGATAGCCGATCTGATGGTGAAGTTTTTCTTCCCCAAATGGATAACCGTCTTGTTTTACTGGCTGAAATCAAACCCCAACTTTGAAGAGATTTTGCATTGGTACAAGGGTTGGAAAGAAGTCATTCCAGAGGAGCTTCAAGCAAATGAAAGCATCCGCCTTCAGCTCAATTGGGGTCTTGACATGATGAACCGGGCCGTTGAGGGTAGGGACTTGGTCGAACCTTGCCATGTGGAGCAAAGACAATCCGATTTTGAGGCACAGAAAAAAGCAGCAGCAGCAGCAAACCAAGCAAACTCCAATGAGACAATGATGAGCTTGAGAGATGTGATCGAAGCCTTTGCGCAGCAGCACAGCTTGCTATTTAAGCCTAAACCCGAGAGGAGGCAAGACGGTCACCAGATATATGCATTTGGTTATGTAAACATCATAGTGGACTCTGTCAATCAAAAGGTGTATGCCCGGAAACCAAGAGAGGAAGCCTGGTCCCTCGTAGACCTTGCAACATTGCTTGACATGCACAATAACTCTCTTGCAAGGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

796

Amino Acids

92.77

Weight (kDa)

5.88

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP_N	PF12457	1 - 88	1.1e-14	Tuftelin interacting protein N terminal
G-patch	PF01585	157 - 198	6e-13	G-patch domain
GCFC	PF07842	371 - 632	1.5e-83	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1341, 2187
AccB1I	GGYRCC	1 cut(s)	1641
AccI	GTMKAC	2 cut(s)	186, 2337
AccII	CGCG	5 cut(s)	87, 300, 801, 1527, 1655
AciI	CCGC	3 cut(s)	801, 1525, 1999
AclWI	GGATC	6 cut(s)	53, 147, 160, 1391, 1404, 1479
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	2 cut(s)	206, 404
AcuI	CTGAAG	3 cut(s)	330, 1163, 1988
AfaI	GTAC	5 cut(s)	90, 113, 509, 1225, 1946
AfiI	CCNNNNNNNGG	8 cut(s)	275, 559, 1081, 1262, 1413, 1549, 1574, 2226
AflIII	ACRYGT	2 cut(s)	85, 1653
AjnI	CCWGG	2 cut(s)	1283, 2324
AjuI	GAANNNNNNNTTGG	6 cut(s)	432, 464, 989, 1021, 1022, 1054
AloI	GAACNNNNNNTCC	2 cut(s)	795, 827
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	5 cut(s)	76, 217, 373, 1141, 2141
AlwI	GGATC	6 cut(s)	53, 147, 160, 1391, 1404, 1479
Ama87I	CYCGRG	2 cut(s)	524, 2219
AoxI	GGCC	4 cut(s)	37, 572, 1389, 2037
ApeKI	GCWGC	9 cut(s)	1438, 1441, 1747, 2114, 2117, 2120, 2123, 2188, 2191
ApoI	RAATTY	2 cut(s)	206, 404
ArsI	GACNNNNNNTTYG	2 cut(s)	795, 827
AseI	ATTAAT	1 cut(s)	1571
Asp700I	GAANNNNTTC	2 cut(s)	1868, 1965
AspLEI	GCGC	5 cut(s)	75, 300, 801, 1342, 2188
AspS9I	GGNCC	4 cut(s)	803, 1072, 2037, 2328
AsuC2I	CCSGG	2 cut(s)	2036, 2305
AsuHPI	GGTGA	4 cut(s)	335, 1148, 1873, 2231
AvaI	CYCGRG	2 cut(s)	524, 2219
AvaII	GGWCC	3 cut(s)	803, 1072, 2328
BaeI	ACNNNNGTAYC	4 cut(s)	1235, 1268, 1936, 1969
BamHI	GGATCC	2 cut(s)	152, 1396
BanI	GGYRCC	1 cut(s)	1641
BanII	GRGCYC	2 cut(s)	554, 930
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	9 cut(s)	1425, 1428, 1759, 2126, 2129, 2132, 2135, 2200, 2203
BccI	CCATC	6 cut(s)	314, 320, 425, 496, 1547, 1852
BceAI	ACGGC	6 cut(s)	52, 67, 130, 277, 1663, 2024
BcgI	CGANNNNNNTGC	6 cut(s)	277, 311, 1640, 1674, 2165, 2199
BciT130I	CCWGG	2 cut(s)	1285, 2326
BciVI	GTATCC	2 cut(s)	1263, 1608
BclI	TGATCA	2 cut(s)	256, 1795
BcnI	CCSGG	2 cut(s)	2036, 2305
BcoDI	GTCTC	5 cut(s)	76, 217, 373, 1141, 2141
BfaI	CTAG	3 cut(s)	638, 705, 1757
BfmI	CTRYAG	2 cut(s)	890, 1247
BfuI	GTATCC	2 cut(s)	1263, 1608
BlpI	GCTNAGC	1 cut(s)	924
BmcAI	AGTACT	1 cut(s)	1225
Bme1390I	CCNGG	4 cut(s)	1285, 2036, 2305, 2326
Bme18I	GGWCC	3 cut(s)	803, 1072, 2328
BmeT110I	CYCGRG	2 cut(s)	524, 2219
BmgT120I	GGNCC	4 cut(s)	803, 1072, 2037, 2328
BmiI	GGNNCC	5 cut(s)	154, 1398, 1518, 1643, 2330
BmrFI	CCNGG	4 cut(s)	1285, 2036, 2305, 2326
BmrI	ACTGGG	1 cut(s)	1830
BmsI	GCATC	4 cut(s)	94, 1489, 1564, 2004
BmuI	ACTGGG	1 cut(s)	1830
BpiI	GAAGAC	1 cut(s)	648
BplI	GAGNNNNNCTC	2 cut(s)	507, 539
BpmI	CTGGAG	2 cut(s)	611, 1100
Bpu1102I	GCTNAGC	1 cut(s)	924
BpuEI	CTTGAG	3 cut(s)	792, 1034, 2182
BpuMI	CCSGG	2 cut(s)	2036, 2305
BsaJI	CCNNGG	6 cut(s)	471, 729, 1095, 1392, 1559, 1679
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 1580, 1610
Bsc4I	CCNNNNNNNGG	8 cut(s)	275, 559, 1081, 1262, 1413, 1549, 1574, 2226
Bse1I	ACTGG	5 cut(s)	295, 768, 1083, 1836, 1907
Bse3DI	GCAATG	2 cut(s)	1188, 2348
BseBI	CCWGG	2 cut(s)	1285, 2326
BseDI	CCNNGG	6 cut(s)	471, 729, 1095, 1392, 1559, 1679
BseGI	GGATG	6 cut(s)	1246, 1276, 1504, 1539, 1555, 1995
BseLI	CCNNNNNNNGG	8 cut(s)	275, 559, 1081, 1262, 1413, 1549, 1574, 2226
BseMI	GCAATG	2 cut(s)	1188, 2348
BseMII	CTCAG	3 cut(s)	363, 915, 1645
BseNI	ACTGG	5 cut(s)	295, 768, 1083, 1836, 1907
BseRI	GAGGAG	6 cut(s)	391, 746, 1031, 1604, 1988, 2239
BseXI	GCAGC	9 cut(s)	1425, 1428, 1759, 2126, 2129, 2132, 2135, 2200, 2203
BsgI	GTGCAG	1 cut(s)	1395
Bsh1236I	CGCG	5 cut(s)	87, 300, 801, 1527, 1655
BshFI	GGCC	4 cut(s)	39, 574, 1391, 2039
BshNI	GGYRCC	1 cut(s)	1641
BsiHKAI	GWGCWC	1 cut(s)	930
BsiHKCI	CYCGRG	2 cut(s)	524, 2219
BsiSI	CCGG	3 cut(s)	884, 2035, 2305
BslFI	GGGAC	3 cut(s)	1590, 2066, 2314
BslI	CCNNNNNNNGG	8 cut(s)	275, 559, 1081, 1262, 1413, 1549, 1574, 2226
BsmAI	GTCTC	5 cut(s)	76, 217, 373, 1141, 2141
BsmBI	CGTCTC	3 cut(s)	76, 373, 1141
BsmFI	GGGAC	3 cut(s)	1590, 2066, 2314
BsnI	GGCC	4 cut(s)	39, 574, 1391, 2039
BsoBI	CYCGRG	2 cut(s)	524, 2219
Bsp1286I	GDGCHC	2 cut(s)	554, 930
Bsp1720I	GCTNAGC	1 cut(s)	924
Bsp19I	CCATGG	2 cut(s)	1095, 1559
BspACI	CCGC	3 cut(s)	801, 1525, 1999
BspANI	GGCC	4 cut(s)	39, 574, 1391, 2039
BspCNI	CTCAG	3 cut(s)	364, 916, 1644
BspFNI	CGCG	5 cut(s)	87, 300, 801, 1527, 1655
BspHI	TCATGA	2 cut(s)	936, 1812
BspLI	GGNNCC	5 cut(s)	154, 1398, 1518, 1643, 2330
BspMAI	CTGCAG	1 cut(s)	1251
BspPI	GGATC	6 cut(s)	53, 147, 160, 1391, 1404, 1479
BspT107I	GGYRCC	1 cut(s)	1641
BsrDI	GCAATG	2 cut(s)	1188, 2348
BsrI	ACTGG	5 cut(s)	295, 768, 1083, 1836, 1907
BssECI	CCNNGG	6 cut(s)	471, 729, 1095, 1392, 1559, 1679
BssT1I	CCWWGG	4 cut(s)	471, 1095, 1392, 1559
Bst2UI	CCWGG	2 cut(s)	1285, 2326
Bst4CI	ACNGT	6 cut(s)	68, 93, 1066, 1152, 1891, 2237
Bst6I	CTCTTC	7 cut(s)	692, 750, 1080, 1139, 1539, 1755, 1923
BstAPI	GCANNNNNTGC	1 cut(s)	2200
BstC8I	GCNNGC	4 cut(s)	296, 1122, 1389, 2201
BstDEI	CTNAG	4 cut(s)	372, 924, 1488, 1631
BstDSI	CCRYGG	3 cut(s)	1095, 1559, 1679
BstEII	GGTNACC	1 cut(s)	2237
BstF5I	GGATG	6 cut(s)	1246, 1276, 1504, 1539, 1555, 1995
BstFNI	CGCG	5 cut(s)	87, 300, 801, 1527, 1655
BstHHI	GCGC	5 cut(s)	75, 300, 801, 1342, 2188
BstMAI	GTCTC	5 cut(s)	76, 217, 373, 1141, 2141
BstNI	CCWGG	2 cut(s)	1285, 2326
BstNSI	RCATGY	2 cut(s)	298, 2362
BstPI	GGTNACC	1 cut(s)	2237
BstSCI	CCNGG	4 cut(s)	1283, 2034, 2303, 2324
BstSFI	CTRYAG	2 cut(s)	890, 1247
BstUI	CGCG	5 cut(s)	87, 300, 801, 1527, 1655
BstV1I	GCAGC	9 cut(s)	1425, 1428, 1759, 2126, 2129, 2132, 2135, 2200, 2203
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	3 cut(s)	152, 1396, 1471
BstYI	RGATCY	3 cut(s)	152, 1396, 1471
BsuI	GTATCC	2 cut(s)	1263, 1608
BsuRI	GGCC	4 cut(s)	39, 574, 1391, 2039
BtgI	CCRYGG	3 cut(s)	1095, 1559, 1679
BtgZI	GCGATG	2 cut(s)	315, 1314
BtsCI	GGATG	6 cut(s)	1246, 1276, 1504, 1539, 1555, 1995
BtsIMutI	CAGTG	2 cut(s)	216, 1639
Cac8I	GCNNGC	4 cut(s)	296, 1122, 1389, 2201
CciI	TCATGA	2 cut(s)	936, 1812
CfoI	GCGC	5 cut(s)	75, 300, 801, 1342, 2188
Cfr13I	GGNCC	4 cut(s)	803, 1072, 2037, 2328
CseI	GACGC	4 cut(s)	93, 1117, 1644, 1661
Csp6I	GTAC	5 cut(s)	89, 112, 508, 1224, 1945
CviQI	GTAC	5 cut(s)	89, 112, 508, 1224, 1945
DdeI	CTNAG	4 cut(s)	372, 924, 1488, 1631
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	7 cut(s)	692, 750, 1080, 1139, 1539, 1755, 1923
EarI	CTCTTC	7 cut(s)	692, 750, 1080, 1139, 1539, 1755, 1923
EciI	GGCGGA	1 cut(s)	1988
Ecl136II	GAGCTC	1 cut(s)	928
Eco130I	CCWWGG	4 cut(s)	471, 1095, 1392, 1559
Eco24I	GRGCYC	2 cut(s)	554, 930
Eco32I	GATATC	1 cut(s)	934
Eco47I	GGWCC	3 cut(s)	803, 1072, 2328
Eco53kI	GAGCTC	1 cut(s)	928
Eco57I	CTGAAG	3 cut(s)	330, 1163, 1988
Eco88I	CYCGRG	2 cut(s)	524, 2219
Eco91I	GGTNACC	1 cut(s)	2237
EcoICRI	GAGCTC	1 cut(s)	928
EcoO65I	GGTNACC	1 cut(s)	2237
EcoRII	CCWGG	2 cut(s)	1283, 2324
EcoRV	GATATC	1 cut(s)	934
EcoT14I	CCWWGG	4 cut(s)	471, 1095, 1392, 1559
EcoT22I	ATGCAT	3 cut(s)	1190, 1725, 2254
EcoT38I	GRGCYC	2 cut(s)	554, 930
ErhI	CCWWGG	4 cut(s)	471, 1095, 1392, 1559
Esp3I	CGTCTC	3 cut(s)	76, 373, 1141
FalI	AAGNNNNNCTT	2 cut(s)	1856, 1888
FaqI	GGGAC	3 cut(s)	1590, 2066, 2314
FauNDI	CATATG	1 cut(s)	1842
FbaI	TGATCA	2 cut(s)	256, 1795
FblI	GTMKAC	2 cut(s)	186, 2337
FokI	GGATG	6 cut(s)	1253, 1283, 1511, 1526, 1542, 1982
FriOI	GRGCYC	2 cut(s)	554, 930
FspBI	CTAG	3 cut(s)	638, 705, 1757
FspI	TGCGCA	2 cut(s)	1341, 2187
GlaI	GCGC	5 cut(s)	74, 299, 800, 1341, 2187
GsuI	CTGGAG	2 cut(s)	611, 1100
HaeIII	GGCC	4 cut(s)	39, 574, 1391, 2039
HapII	CCGG	3 cut(s)	884, 2035, 2305
HgaI	GACGC	4 cut(s)	93, 1117, 1644, 1661
HhaI	GCGC	5 cut(s)	75, 300, 801, 1342, 2188
Hin6I	GCGC	5 cut(s)	73, 298, 799, 1340, 2186
HinP1I	GCGC	5 cut(s)	73, 298, 799, 1340, 2186
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	6 cut(s)	522, 532, 764, 1115, 1697, 2279
HpaII	CCGG	3 cut(s)	884, 2035, 2305
HphI	GGTGA	4 cut(s)	335, 1148, 1873, 2231
Hpy166II	GTNNAC	9 cut(s)	187, 510, 521, 781, 916, 1774, 2266, 2278, 2338
Hpy188I	TCNGA	7 cut(s)	124, 148, 241, 246, 1062, 1857, 2092
Hpy8I	GTNNAC	9 cut(s)	187, 510, 521, 781, 916, 1774, 2266, 2278, 2338
Hpy99I	CGWCG	3 cut(s)	53, 188, 1655
HpyAV	CCTTC	8 cut(s)	385, 434, 477, 690, 863, 1282, 1489, 2012
HpyCH4III	ACNGT	6 cut(s)	68, 93, 1066, 1152, 1891, 2237
HpyCH4IV	ACGT	3 cut(s)	183, 382, 1609
HpyF3I	CTNAG	4 cut(s)	372, 924, 1488, 1631
HpySE526I	ACGT	3 cut(s)	183, 382, 1609
HspAI	GCGC	5 cut(s)	73, 298, 799, 1340, 2186
Ksp22I	TGATCA	2 cut(s)	256, 1795
LmnI	GCTCC	7 cut(s)	368, 630, 712, 886, 1009, 1975, 2077
Lsp1109I	GCAGC	9 cut(s)	1425, 1428, 1759, 2126, 2129, 2132, 2135, 2200, 2203
LweI	GCATC	4 cut(s)	94, 1489, 1564, 2004
MaeI	CTAG	3 cut(s)	638, 705, 1757
MaeII	ACGT	3 cut(s)	183, 382, 1609
MaeIII	GTNAC	1 cut(s)	2237
MfeI	CAATTG	2 cut(s)	1804, 2011
MflI	RGATCY	3 cut(s)	152, 1396, 1471
MhlI	GDGCHC	2 cut(s)	554, 930
MluCI	AATT	9 cut(s)	206, 235, 404, 826, 898, 978, 1381, 1804, 2011
MluI	ACGCGT	2 cut(s)	85, 1653
MlyI	GAGTC	3 cut(s)	516, 1109, 2273
MmeI	TCCRAC	5 cut(s)	987, 1050, 1625, 1688, 1934
Mph1103I	ATGCAT	3 cut(s)	1190, 1725, 2254
MroXI	GAANNNNTTC	2 cut(s)	1868, 1965
MseI	TTAA	6 cut(s)	204, 282, 668, 1458, 1571, 2208
MslI	CAYNNNNRTG	2 cut(s)	794, 2273
MspI	CCGG	3 cut(s)	884, 2035, 2305
MspR9I	CCNGG	4 cut(s)	1285, 2036, 2305, 2326
MunI	CAATTG	2 cut(s)	1804, 2011
MvaI	CCWGG	2 cut(s)	1285, 2326
MvnI	CGCG	5 cut(s)	87, 300, 801, 1527, 1655
NciI	CCSGG	2 cut(s)	2036, 2305
NcoI	CCATGG	2 cut(s)	1095, 1559
NdeI	CATATG	1 cut(s)	1842
NlaIV	GGNNCC	5 cut(s)	154, 1398, 1518, 1643, 2330
NmeAIII	GCCGAG	1 cut(s)	754
NmuCI	GTSAC	1 cut(s)	2237
NsbI	TGCGCA	2 cut(s)	1341, 2187
NsiI	ATGCAT	3 cut(s)	1190, 1725, 2254
NspI	RCATGY	2 cut(s)	298, 2362
PaeI	GCATGC	1 cut(s)	298
PagI	TCATGA	2 cut(s)	936, 1812
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdmI	GAANNNNTTC	2 cut(s)	1868, 1965
PfeI	GAWTC	3 cut(s)	532, 764, 1697
PflFI	GACNNNGTC	2 cut(s)	2057, 2282
PfoI	TCCNGGA	1 cut(s)	1283
PleI	GAGTC	3 cut(s)	516, 1109, 2273
PpsI	GAGTC	3 cut(s)	516, 1109, 2273
PshBI	ATTAAT	1 cut(s)	1571
Psp124BI	GAGCTC	1 cut(s)	930
Psp6I	CCWGG	2 cut(s)	1283, 2324
PspEI	GGTNACC	1 cut(s)	2237
PspGI	CCWGG	2 cut(s)	1283, 2324
PspN4I	GGNNCC	5 cut(s)	154, 1398, 1518, 1643, 2330
PspPI	GGNCC	4 cut(s)	803, 1072, 2037, 2328
PstI	CTGCAG	1 cut(s)	1251
PsuI	RGATCY	3 cut(s)	152, 1396, 1471
PsyI	GACNNNGTC	2 cut(s)	2057, 2282
RsaI	GTAC	5 cut(s)	90, 113, 509, 1225, 1946
RsaNI	GTAC	5 cut(s)	89, 112, 508, 1224, 1945
RseI	CAYNNNNRTG	2 cut(s)	794, 2273
SacI	GAGCTC	1 cut(s)	930
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	6 cut(s)	204, 282, 668, 1458, 1571, 2208
Sau96I	GGNCC	4 cut(s)	803, 1072, 2037, 2328
ScaI	AGTACT	1 cut(s)	1225
SchI	GAGTC	3 cut(s)	516, 1109, 2273
ScrFI	CCNGG	4 cut(s)	1285, 2036, 2305, 2326
SduI	GDGCHC	2 cut(s)	554, 930
SfaNI	GCATC	4 cut(s)	94, 1489, 1564, 2004
SfcI	CTRYAG	2 cut(s)	890, 1247
SinI	GGWCC	3 cut(s)	803, 1072, 2328
SmiMI	CAYNNNNRTG	2 cut(s)	794, 2273
SmlI	CTYRAG	3 cut(s)	807, 1013, 2161
SmoI	CTYRAG	3 cut(s)	807, 1013, 2161
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	9 cut(s)	206, 235, 404, 826, 898, 978, 1381, 1804, 2011
SsiI	CCGC	3 cut(s)	801, 1525, 1999
SspI	AATATT	1 cut(s)	143
SspMI	CTAG	3 cut(s)	638, 705, 1757
SstI	GAGCTC	1 cut(s)	930
StyD4I	CCNGG	4 cut(s)	1283, 2034, 2303, 2324
StyI	CCWWGG	4 cut(s)	471, 1095, 1392, 1559
TaaI	ACNGT	6 cut(s)	68, 93, 1066, 1152, 1891, 2237
TaiI	ACGT	3 cut(s)	186, 385, 1612
TaqI	TCGA	8 cut(s)	48, 186, 287, 459, 814, 930, 2061, 2175
TasI	AATT	9 cut(s)	206, 235, 404, 826, 898, 978, 1381, 1804, 2011
TatI	WGTACW	1 cut(s)	1223
TauI	GCSGC	1 cut(s)	1527
TfiI	GAWTC	3 cut(s)	532, 764, 1697
Tru1I	TTAA	6 cut(s)	204, 282, 668, 1458, 1571, 2208
Tru9I	TTAA	6 cut(s)	204, 282, 668, 1458, 1571, 2208
TscAI	CASTG	2 cut(s)	223, 1639
TseFI	GTSAC	1 cut(s)	2237
TseI	GCWGC	9 cut(s)	1438, 1441, 1747, 2114, 2117, 2120, 2123, 2188, 2191
Tsp45I	GTSAC	1 cut(s)	2237
TspGWI	ACGGA	2 cut(s)	165, 381
TspRI	CASTG	2 cut(s)	223, 1639
Tth111I	GACNNNGTC	2 cut(s)	2057, 2282
VpaK11BI	GGWCC	3 cut(s)	803, 1072, 2328
VspI	ATTAAT	1 cut(s)	1571
XapI	RAATTY	2 cut(s)	206, 404
XceI	RCATGY	2 cut(s)	298, 2362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XmiI	GTMKAC	2 cut(s)	186, 2337
XmnI	GAANNNNTTC	2 cut(s)	1868, 1965
XspI	CTAG	3 cut(s)	638, 705, 1757
ZrmI	AGTACT	1 cut(s)	1225
Zsp2I	ATGCAT	3 cut(s)	1190, 1725, 2254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.