Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Reverse (-)

56326441 .. 56327308

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAACAAGACTACCACGGCTCCAGAAAACGCAGGAGACAAGACGGCAACGTCGATGACCTCACCAAGCCATTCAATTTCAACAATGGCGATGGCCTTGGTCTCACTGCGGGAATCGGGATGAAGATGCTGAAGAACATGGGCTACAAAGGAGGCGGTCTTGGCAAGGACGAACAGGGAATGCTCAACCCCATTCAACCCAAATTGAGGCCAAAGAATTTGGGCATGGGCTTCAACGACACCAAAACCAAGCTGCCCAATTTGCAAGAAGAATCGGAGCCCACAAAGGCTGATGTTCCTCCTCCCACCACCACCACCACCATGCCAACTTGGAAGAAGAACGTAATTAACAAGCAGCAGAAGGATTTCTGTTTGGCAGAGTTCTTGGCCCAGAAGATGGAAGAGGAACAGAATGTTGAGGCCGTCGAAAATTCGGAGAATTTGAATGCTCAGGAGGAAGATGGTGATGATGTTCCGATGCCCGATTTGAACAATGAGATCAGTGCTCTTTTGAACCGACTGAAAGAAGCAAATTCCATGGGAGAATTGACACTGGAAGCGCTGGGCAAGGAGTTTGGTGACATTCGGAGGAGTTGCACTGACCATTGGTTGGGATCCTCTTCAGAATCCATGGCATGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

214

Amino Acids

23.91

Weight (kDa)

4.9

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	37 - 77	6.6e-13	G-patch domain
G-patch_2	PF12656	39 - 80	3.7e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AccB7I	CCANNNNNTGG	3 cut(s)	397, 610, 636
AciI	CCGC	2 cut(s)	110, 156
AclWI	GGATC	2 cut(s)	609, 622
AcsI	RAATTY	4 cut(s)	217, 430, 439, 532
AcuI	CTGAAG	2 cut(s)	152, 606
AfeI	AGCGCT	1 cut(s)	561
AfiI	CCNNNNNNNGG	4 cut(s)	207, 397, 610, 636
AgsI	TTSAA	7 cut(s)	76, 82, 197, 235, 445, 490, 514
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	2 cut(s)	31, 107
AlwI	GGATC	2 cut(s)	609, 622
Aor51HI	AGCGCT	1 cut(s)	561
AoxI	GGCC	4 cut(s)	94, 209, 387, 420
ApeKI	GCWGC	2 cut(s)	253, 355
ApoI	RAATTY	4 cut(s)	217, 430, 439, 532
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	3 cut(s)	55, 476, 590
BamHI	GGATCC	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	240, 367
BccI	CCATC	3 cut(s)	86, 391, 455
BceAI	ACGGC	3 cut(s)	34, 61, 407
BcoDI	GTCTC	2 cut(s)	31, 107
BfoI	RGCGCY	1 cut(s)	563
BisI	GCNGC	2 cut(s)	254, 356
BlsI	GCNGC	2 cut(s)	255, 357
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	3 cut(s)	22, 279, 616
BmsI	GCATC	2 cut(s)	117, 468
BpmI	CTGGAG	1 cut(s)	7
Bpu10I	CCTNAGC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	4 cut(s)	16, 97, 537, 630
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 397, 610, 636
Bse1I	ACTGG	1 cut(s)	558
BseDI	CCNNGG	4 cut(s)	16, 97, 537, 630
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	4 cut(s)	207, 397, 610, 636
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	558
BseRI	GAGGAG	2 cut(s)	291, 604
BseXI	GCAGC	2 cut(s)	240, 367
BseYI	CCCAGC	1 cut(s)	562
BshFI	GGCC	4 cut(s)	96, 211, 389, 422
BsiHKAI	GWGCWC	1 cut(s)	508
BslI	CCNNNNNNNGG	4 cut(s)	207, 397, 610, 636
BsmAI	GTCTC	2 cut(s)	31, 107
BsmI	GAATGC	2 cut(s)	186, 451
BsnI	GGCC	4 cut(s)	96, 211, 389, 422
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	282, 508
Bsp143I	GATC	2 cut(s)	498, 614
Bsp19I	CCATGG	2 cut(s)	537, 630
BspACI	CCGC	2 cut(s)	110, 156
BspANI	GGCC	4 cut(s)	96, 211, 389, 422
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	22, 279, 616
BspPI	GGATC	2 cut(s)	609, 622
BspTNI	GGTCTC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	558
BssECI	CCNNGG	4 cut(s)	16, 97, 537, 630
BssMI	GATC	2 cut(s)	498, 614
BssT1I	CCWWGG	3 cut(s)	97, 537, 630
Bst6I	CTCTTC	2 cut(s)	396, 625
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	3 cut(s)	16, 537, 630
BstF5I	GGATG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	2 cut(s)	501, 617
BstMAI	GTCTC	2 cut(s)	31, 107
BstMBI	GATC	2 cut(s)	498, 614
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 262
BstV1I	GCAGC	2 cut(s)	240, 367
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	4 cut(s)	96, 211, 389, 422
BtgI	CCRYGG	3 cut(s)	16, 537, 630
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	4 cut(s)	105, 508, 551, 597
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	388
CviAII	CATG	6 cut(s)	139, 226, 322, 538, 631, 636
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	2 cut(s)	500, 616
DpnII	GATC	2 cut(s)	498, 614
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
Eam1104I	CTCTTC	2 cut(s)	396, 625
EarI	CTCTTC	2 cut(s)	396, 625
Eco130I	CCWWGG	3 cut(s)	97, 537, 630
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	107
Eco47III	AGCGCT	1 cut(s)	561
Eco57I	CTGAAG	2 cut(s)	152, 606
EcoT14I	CCWWGG	3 cut(s)	97, 537, 630
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	3 cut(s)	97, 537, 630
FaeI	CATG	6 cut(s)	142, 229, 325, 541, 634, 639
FaiI	YATR	6 cut(s)	140, 227, 323, 539, 632, 637
FatI	CATG	6 cut(s)	138, 225, 321, 537, 630, 635
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	254, 356
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	254, 356
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	2 cut(s)	254, 356
GsaI	CCCAGC	1 cut(s)	566
GsuI	CTGGAG	1 cut(s)	7
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	4 cut(s)	96, 211, 389, 422
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	6 cut(s)	142, 229, 325, 541, 634, 639
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HinfI	GANTC	3 cut(s)	114, 272, 626
HphI	GGTGA	3 cut(s)	55, 476, 590
Hpy188I	TCNGA	5 cut(s)	277, 436, 477, 588, 625
Hpy188III	TCNNGA	3 cut(s)	24, 118, 452
Hpy99I	CGWCG	2 cut(s)	56, 428
HpyAV	CCTTC	1 cut(s)	355
HpyCH4IV	ACGT	2 cut(s)	51, 342
HpyCH4V	TGCA	2 cut(s)	265, 597
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 262
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	2 cut(s)	51, 342
Hsp92II	CATG	6 cut(s)	142, 229, 325, 541, 634, 639
HspAI	GCGC	1 cut(s)	560
Kzo9I	GATC	2 cut(s)	498, 614
LmnI	GCTCC	2 cut(s)	26, 277
LpnPI	CCDG	7 cut(s)	19, 37, 161, 404, 437, 539, 548
Lsp1109I	GCAGC	2 cut(s)	240, 367
LweI	GCATC	2 cut(s)	117, 468
MaeII	ACGT	2 cut(s)	51, 342
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	2 cut(s)	500, 616
MboI	GATC	2 cut(s)	498, 614
MboII	GAAGA	9 cut(s)	136, 145, 281, 346, 349, 406, 413, 470, 612
MflI	RGATCY	1 cut(s)	614
MhlI	GDGCHC	2 cut(s)	282, 508
MluCI	AATT	9 cut(s)	76, 203, 217, 259, 345, 430, 439, 532, 545
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	320
Mva1269I	GAATGC	2 cut(s)	186, 451
MwoI	GCNNNNNNNGC	2 cut(s)	162, 262
NcoI	CCATGG	2 cut(s)	537, 630
NdeII	GATC	2 cut(s)	498, 614
NlaIII	CATG	6 cut(s)	142, 229, 325, 541, 634, 639
NlaIV	GGNNCC	3 cut(s)	22, 279, 616
NmuCI	GTSAC	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	2 cut(s)	186, 451
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	114, 272, 626
PflMI	CCANNNNNTGG	3 cut(s)	397, 610, 636
PkrI	GCNGC	2 cut(s)	255, 357
PspFI	CCCAGC	1 cut(s)	562
PspN4I	GGNNCC	3 cut(s)	22, 279, 616
PspPI	GGNCC	1 cut(s)	388
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
PsuI	RGATCY	1 cut(s)	614
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	2 cut(s)	254, 356
Sau3AI	GATC	2 cut(s)	498, 614
Sau96I	GGNCC	1 cut(s)	388
SduI	GDGCHC	2 cut(s)	282, 508
SetI	ASST	4 cut(s)	54, 63, 255, 345
SfaNI	GCATC	2 cut(s)	117, 468
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	9 cut(s)	76, 203, 217, 259, 345, 430, 439, 532, 545
SsiI	CCGC	2 cut(s)	110, 156
StyI	CCWWGG	3 cut(s)	97, 537, 630
TaiI	ACGT	2 cut(s)	54, 345
TaqI	TCGA	2 cut(s)	54, 426
TasI	AATT	9 cut(s)	76, 203, 217, 259, 345, 430, 439, 532, 545
TfiI	GAWTC	3 cut(s)	114, 272, 626
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	4 cut(s)	112, 508, 558, 604
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	2 cut(s)	253, 355
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	4 cut(s)	112, 508, 558, 604
Van91I	CCANNNNNTGG	3 cut(s)	397, 610, 636
XapI	RAATTY	4 cut(s)	217, 430, 439, 532
XmnI	GAANNNNTTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.