Rmu_sc0023058.1_g000001

tuftelin-interacting protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023058.1
Physical Location & Seq
Reverse (-)
61 .. 1461
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023058.1_g000001.1.cds

Sequence Viewer

Length: 1401 bp
atggagaggtttggaatggagaacgattacgaggacggccaatggatcgacggcgagttcttctaccgtaagcgcaaggagagacgcgtacagtccaaagacgatgccctgtacggctactccgatgaagaagatgaagaatattcagacggatccagaaaacgcaggaagaaagatcgctacgtcgactacaccaagcccattaaatttgtctccactgaaaagctggacaacaattccgatcagaagaaaactgatcatggcactcctgtcattggctttaactcgactggcatgcgcgatgaagctgaagatgatgatggtgatggttttctggcgacagagtttgggaggaagataaaggacggagctgagaggagacgtaagaagaaggaaaagctgaaattcaagaatgagattcgaaaatgtgatggagatgaaggaggcattggggatttcgagaaacacaccaagggcataggaaggaagatgtttgagaagatggggtacacaggaggtggactcgggaagaatcagcaaggcattgtgagtcctattgaggtaaagttgaggccgaaaaatatgggcatgggtttcaatgactacaaggaaacagaaaccaagctccagaatttgcaagaagacaaacctaacaagcctacaaccttaaaacagaagccttcttggaagaagaagaggactagcaaggagcattatctctctgccgaggagtttatagccaagaagcaggaagagagtgattccaatctttttgttcacaatgtcattgatatgcgcggacctcaagttcaagtgttgagcaatttggacgatttgaatgagcgagaggaagatagagaagatgaaggtgttttcatgccggagctacagcacaatttgaagttggttgtggacttggctgagctcgatatcatgaaacttgatagggatttaaggtatgagagggaggcagtaattagattgaagaatgagaaagagaggttggagcttgaggaggcgaggcagaagcaacatttggatagtatggagagtattcagactgtgttggaccaactggaggaagagaaatccatgggaacattgatgctggactcgcttgcaaatagatttggtgatctcaagagacggtttgcagatgagtataagttgtgtaagttgtcatgcattgcttgttcctttgctctgcctttgtttatgagtactattcaaggttgggatgcactgcagtatcctttgtatggcttggatgtcgtgtcctcctggaaggatttgcttcatggagagggaaataagtgttcaacatcatcgcctcatgcgcagttggtttttgagattgtgaggatttctggtgcagataatttggcaggccaaggatcctga

Protein Analysis

466

Amino Acids

53.86

Weight (kDa)

5.53

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1338
AccI GTMKAC 1 cut(s) 186
AccII CGCG 3 cut(s) 87, 300, 798
AciI CCGC 1 cut(s) 798
AclWI GGATC 4 cut(s) 53, 147, 160, 1389
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 3 cut(s) 206, 404, 631
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 4 cut(s) 90, 113, 509, 1222
AfiI CCNNNNNNNGG 3 cut(s) 275, 1078, 1259
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 8 cut(s) 409, 598, 812, 838, 901, 985, 1229, 1320
AjnI CCWGG 1 cut(s) 1280
AjuI GAANNNNNNNTTGG 6 cut(s) 432, 464, 986, 1018, 1019, 1051
AloI GAACNNNNNNTCC 2 cut(s) 792, 824
AluBI AGCT 8 cut(s) 226, 308, 371, 400, 625, 886, 925, 1009
AluI AGCT 8 cut(s) 226, 308, 371, 400, 625, 886, 925, 1009
Alw21I GWGCWC 1 cut(s) 927
Alw26I GTCTC 4 cut(s) 76, 217, 373, 1138
AlwI GGATC 4 cut(s) 53, 147, 160, 1389
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 3 cut(s) 37, 572, 1387
ApoI RAATTY 3 cut(s) 206, 404, 631
AspLEI GCGC 4 cut(s) 75, 300, 798, 1339
AspS9I GGNCC 2 cut(s) 800, 1069
AsuHPI GGTGA 2 cut(s) 335, 1145
AsuII TTCGAA 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 2 cut(s) 800, 1069
BaeI ACNNNNGTAYC 2 cut(s) 1232, 1265
BamHI GGATCC 2 cut(s) 152, 1394
BanII GRGCYC 1 cut(s) 927
BarI GAAGNNNNNNTAC 2 cut(s) 491, 523
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 927
BccI CCATC 4 cut(s) 314, 320, 425, 496
BceAI ACGGC 3 cut(s) 52, 67, 130
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 1 cut(s) 1282
BciVI GTATCC 1 cut(s) 1260
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 4 cut(s) 76, 217, 373, 1138
BfaI CTAG 1 cut(s) 702
BfmI CTRYAG 2 cut(s) 887, 1244
BfuI GTATCC 1 cut(s) 1260
BlpI GCTNAGC 1 cut(s) 921
BmcAI AGTACT 1 cut(s) 1222
Bme1390I CCNGG 1 cut(s) 1282
Bme18I GGWCC 2 cut(s) 800, 1069
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 2 cut(s) 800, 1069
BmiI GGNNCC 2 cut(s) 154, 1396
BmrFI CCNGG 1 cut(s) 1282
BmsI GCATC 3 cut(s) 94, 1095, 1228
BpiI GAAGAC 1 cut(s) 648
BplI GAGNNNNNCTC 2 cut(s) 507, 539
BpmI CTGGAG 2 cut(s) 611, 1097
Bpu1102I GCTNAGC 1 cut(s) 921
Bpu14I TTCGAA 1 cut(s) 421
BpuEI CTTGAG 3 cut(s) 789, 1031, 1124
BsaBI GATNNNNATC 1 cut(s) 765
BsaJI CCNNGG 4 cut(s) 471, 726, 1092, 1390
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 1078, 1259
Bse1I ACTGG 2 cut(s) 295, 1080
Bse3DI GCAATG 1 cut(s) 1185
Bse8I GATNNNNATC 1 cut(s) 765
BseBI CCWGG 1 cut(s) 1282
BseDI CCNNGG 4 cut(s) 471, 726, 1092, 1390
BseGI GGATG 2 cut(s) 1243, 1273
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 3 cut(s) 275, 1078, 1259
BseMI GCAATG 1 cut(s) 1185
BseMII CTCAG 2 cut(s) 363, 912
BseNI ACTGG 2 cut(s) 295, 1080
BseRI GAGGAG 3 cut(s) 391, 743, 1028
BsgI GTGCAG 1 cut(s) 1392
Bsh1236I CGCG 3 cut(s) 87, 300, 798
BshFI GGCC 3 cut(s) 39, 574, 1389
BsiHKAI GWGCWC 1 cut(s) 927
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 1 cut(s) 881
BslI CCNNNNNNNGG 3 cut(s) 275, 1078, 1259
BsmAI GTCTC 4 cut(s) 76, 217, 373, 1138
BsmBI CGTCTC 3 cut(s) 76, 373, 1138
BsnI GGCC 3 cut(s) 39, 574, 1389
BsoBI CYCGRG 1 cut(s) 524
Bsp119I TTCGAA 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 927
Bsp143I GATC 7 cut(s) 45, 152, 175, 241, 256, 1135, 1394
Bsp1720I GCTNAGC 1 cut(s) 921
Bsp19I CCATGG 1 cut(s) 1092
BspACI CCGC 1 cut(s) 798
BspANI GGCC 3 cut(s) 39, 574, 1389
BspCNI CTCAG 2 cut(s) 364, 913
BspFNI CGCG 3 cut(s) 87, 300, 798
BspHI TCATGA 1 cut(s) 933
BspLI GGNNCC 2 cut(s) 154, 1396
BspMAI CTGCAG 1 cut(s) 1248
BspPI GGATC 4 cut(s) 53, 147, 160, 1389
BspT104I TTCGAA 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 1185
BsrI ACTGG 2 cut(s) 295, 1080
BssECI CCNNGG 4 cut(s) 471, 726, 1092, 1390
BssMI GATC 7 cut(s) 45, 152, 175, 241, 256, 1135, 1394
BssT1I CCWWGG 3 cut(s) 471, 1092, 1390
Bst2UI CCWGG 1 cut(s) 1282
Bst4CI ACNGT 4 cut(s) 68, 93, 1063, 1149
Bst6I CTCTTC 3 cut(s) 689, 747, 1077
BstBI TTCGAA 1 cut(s) 421
BstC8I GCNNGC 3 cut(s) 296, 1119, 1387
BstDEI CTNAG 2 cut(s) 372, 921
BstDSI CCRYGG 1 cut(s) 1092
BstF5I GGATG 2 cut(s) 1243, 1273
BstFNI CGCG 3 cut(s) 87, 300, 798
BstHHI GCGC 4 cut(s) 75, 300, 798, 1339
BstKTI GATC 7 cut(s) 48, 155, 178, 244, 259, 1138, 1397
BstMAI GTCTC 4 cut(s) 76, 217, 373, 1138
BstMBI GATC 7 cut(s) 45, 152, 175, 241, 256, 1135, 1394
BstMWI GCNNNNNNNGC 2 cut(s) 1114, 1336
BstNI CCWGG 1 cut(s) 1282
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 1280
BstSFI CTRYAG 2 cut(s) 887, 1244
BstUI CGCG 3 cut(s) 87, 300, 798
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 2 cut(s) 152, 1394
BstYI RGATCY 2 cut(s) 152, 1394
BsuI GTATCC 1 cut(s) 1260
BsuRI GGCC 3 cut(s) 39, 574, 1389
BtgI CCRYGG 1 cut(s) 1092
BtgZI GCGATG 2 cut(s) 315, 1311
BtsCI GGATG 2 cut(s) 1243, 1273
BtsI GCAGTG 1 cut(s) 1241
BtsIMutI CAGTG 2 cut(s) 216, 1241
Cac8I GCNNGC 3 cut(s) 296, 1119, 1387
CciI TCATGA 1 cut(s) 933
CfoI GCGC 4 cut(s) 75, 300, 798, 1339
Cfr13I GGNCC 2 cut(s) 800, 1069
CseI GACGC 1 cut(s) 93
Csp6I GTAC 4 cut(s) 89, 112, 508, 1221
CviAII CATG 9 cut(s) 260, 295, 589, 877, 934, 1093, 1182, 1298, 1334
CviQI GTAC 4 cut(s) 89, 112, 508, 1221
DdeI CTNAG 2 cut(s) 372, 921
DpnI GATC 7 cut(s) 47, 154, 177, 243, 258, 1137, 1396
DpnII GATC 7 cut(s) 45, 152, 175, 241, 256, 1135, 1394
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 3 cut(s) 689, 747, 1077
EarI CTCTTC 3 cut(s) 689, 747, 1077
Ecl136II GAGCTC 1 cut(s) 925
Eco130I CCWWGG 3 cut(s) 471, 1092, 1390
Eco24I GRGCYC 1 cut(s) 927
Eco32I GATATC 1 cut(s) 931
Eco47I GGWCC 2 cut(s) 800, 1069
Eco53kI GAGCTC 1 cut(s) 925
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 524
EcoICRI GAGCTC 1 cut(s) 925
EcoRII CCWGG 1 cut(s) 1280
EcoRV GATATC 1 cut(s) 931
EcoT14I CCWWGG 3 cut(s) 471, 1092, 1390
EcoT22I ATGCAT 1 cut(s) 1187
EcoT38I GRGCYC 1 cut(s) 927
ErhI CCWWGG 3 cut(s) 471, 1092, 1390
Esp3I CGTCTC 3 cut(s) 76, 373, 1138
FaeI CATG 9 cut(s) 263, 298, 592, 880, 937, 1096, 1185, 1301, 1337
FatI CATG 9 cut(s) 259, 294, 588, 876, 933, 1092, 1181, 1297, 1333
FbaI TGATCA 1 cut(s) 256
FblI GTMKAC 1 cut(s) 186
FokI GGATG 2 cut(s) 1250, 1280
FriOI GRGCYC 1 cut(s) 927
FspBI CTAG 1 cut(s) 702
FspI TGCGCA 1 cut(s) 1338
GlaI GCGC 4 cut(s) 74, 299, 797, 1338
GsuI CTGGAG 2 cut(s) 611, 1097
HaeIII GGCC 3 cut(s) 39, 574, 1389
HapII CCGG 1 cut(s) 881
HgaI GACGC 1 cut(s) 93
HhaI GCGC 4 cut(s) 75, 300, 798, 1339
Hin1II CATG 9 cut(s) 263, 298, 592, 880, 937, 1096, 1185, 1301, 1337
Hin6I GCGC 4 cut(s) 73, 298, 796, 1337
HinP1I GCGC 4 cut(s) 73, 298, 796, 1337
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 6 cut(s) 418, 522, 532, 550, 761, 1112
HpaII CCGG 1 cut(s) 881
HphI GGTGA 2 cut(s) 335, 1145
Hpy166II GTNNAC 5 cut(s) 187, 510, 521, 778, 913
Hpy188I TCNGA 5 cut(s) 124, 148, 241, 246, 1059
Hpy188III TCNNGA 8 cut(s) 156, 409, 460, 526, 628, 934, 1141, 1398
Hpy8I GTNNAC 5 cut(s) 187, 510, 521, 778, 913
Hpy99I CGWCG 2 cut(s) 53, 188
HpyAV CCTTC 6 cut(s) 385, 434, 477, 690, 860, 1279
HpyCH4III ACNGT 4 cut(s) 68, 93, 1063, 1149
HpyCH4IV ACGT 2 cut(s) 183, 382
HpyCH4V TGCA 7 cut(s) 637, 1121, 1154, 1185, 1241, 1246, 1373
HpyF10VI GCNNNNNNNGC 2 cut(s) 1114, 1336
HpyF3I CTNAG 2 cut(s) 372, 921
HpySE526I ACGT 2 cut(s) 183, 382
Hsp92II CATG 9 cut(s) 263, 298, 592, 880, 937, 1096, 1185, 1301, 1337
HspAI GCGC 4 cut(s) 73, 298, 796, 1337
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 7 cut(s) 45, 152, 175, 241, 256, 1135, 1394
LmnI GCTCC 5 cut(s) 368, 630, 709, 883, 1006
LweI GCATC 3 cut(s) 94, 1095, 1228
MaeI CTAG 1 cut(s) 702
MaeII ACGT 2 cut(s) 183, 382
MalI GATC 7 cut(s) 47, 154, 177, 243, 258, 1137, 1396
MboI GATC 7 cut(s) 45, 152, 175, 241, 256, 1135, 1394
MflI RGATCY 2 cut(s) 152, 1394
MhlI GDGCHC 1 cut(s) 927
MluCI AATT 8 cut(s) 206, 235, 404, 631, 823, 895, 975, 1378
MluI ACGCGT 1 cut(s) 85
MlyI GAGTC 3 cut(s) 516, 559, 1106
MmeI TCCRAC 2 cut(s) 984, 1047
Mph1103I ATGCAT 1 cut(s) 1187
MseI TTAA 4 cut(s) 204, 282, 668, 953
MslI CAYNNNNRTG 1 cut(s) 791
MspI CCGG 1 cut(s) 881
MspR9I CCNGG 1 cut(s) 1282
MvaI CCWGG 1 cut(s) 1282
MvnI CGCG 3 cut(s) 87, 300, 798
MwoI GCNNNNNNNGC 2 cut(s) 1114, 1336
NcoI CCATGG 1 cut(s) 1092
NdeII GATC 7 cut(s) 45, 152, 175, 241, 256, 1135, 1394
NlaIII CATG 9 cut(s) 263, 298, 592, 880, 937, 1096, 1185, 1301, 1337
NlaIV GGNNCC 2 cut(s) 154, 1396
NmeAIII GCCGAG 1 cut(s) 751
NsbI TGCGCA 1 cut(s) 1338
NsiI ATGCAT 1 cut(s) 1187
NspI RCATGY 1 cut(s) 298
NspV TTCGAA 1 cut(s) 421
PaeI GCATGC 1 cut(s) 298
PagI TCATGA 1 cut(s) 933
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 3 cut(s) 418, 532, 761
PfoI TCCNGGA 1 cut(s) 1280
PleI GAGTC 3 cut(s) 516, 558, 1106
PpsI GAGTC 3 cut(s) 516, 558, 1106
Psp124BI GAGCTC 1 cut(s) 927
Psp6I CCWGG 1 cut(s) 1280
PspGI CCWGG 1 cut(s) 1280
PspN4I GGNNCC 2 cut(s) 154, 1396
PspPI GGNCC 2 cut(s) 800, 1069
PstI CTGCAG 1 cut(s) 1248
PsuI RGATCY 2 cut(s) 152, 1394
RsaI GTAC 4 cut(s) 90, 113, 509, 1222
RsaNI GTAC 4 cut(s) 89, 112, 508, 1221
RseI CAYNNNNRTG 1 cut(s) 791
SacI GAGCTC 1 cut(s) 927
SalI GTCGAC 1 cut(s) 185
SaqAI TTAA 4 cut(s) 204, 282, 668, 953
Sau3AI GATC 7 cut(s) 45, 152, 175, 241, 256, 1135, 1394
Sau96I GGNCC 2 cut(s) 800, 1069
ScaI AGTACT 1 cut(s) 1222
SchI GAGTC 3 cut(s) 516, 559, 1106
ScrFI CCNGG 1 cut(s) 1282
SduI GDGCHC 1 cut(s) 927
SfaNI GCATC 3 cut(s) 94, 1095, 1228
SfcI CTRYAG 2 cut(s) 887, 1244
SfuI TTCGAA 1 cut(s) 421
SinI GGWCC 2 cut(s) 800, 1069
SmiMI CAYNNNNRTG 1 cut(s) 791
SmlI CTYRAG 3 cut(s) 804, 1010, 1139
SmoI CTYRAG 3 cut(s) 804, 1010, 1139
SphI GCATGC 1 cut(s) 298
Sse9I AATT 8 cut(s) 206, 235, 404, 631, 823, 895, 975, 1378
SsiI CCGC 1 cut(s) 798
SspI AATATT 1 cut(s) 143
SspMI CTAG 1 cut(s) 702
SstI GAGCTC 1 cut(s) 927
StyD4I CCNGG 1 cut(s) 1280
StyI CCWWGG 3 cut(s) 471, 1092, 1390
TaaI ACNGT 4 cut(s) 68, 93, 1063, 1149
TaiI ACGT 2 cut(s) 186, 385
TaqI TCGA 6 cut(s) 48, 186, 287, 421, 459, 927
TasI AATT 8 cut(s) 206, 235, 404, 631, 823, 895, 975, 1378
TatI WGTACW 1 cut(s) 1220
TfiI GAWTC 3 cut(s) 418, 532, 761
Tru1I TTAA 4 cut(s) 204, 282, 668, 953
Tru9I TTAA 4 cut(s) 204, 282, 668, 953
TscAI CASTG 2 cut(s) 223, 1248
TspDTI ATGAA 8 cut(s) 141, 150, 318, 453, 865, 879, 950, 1286
TspGWI ACGGA 2 cut(s) 165, 381
TspRI CASTG 2 cut(s) 223, 1248
VpaK11BI GGWCC 2 cut(s) 800, 1069
XapI RAATTY 3 cut(s) 206, 404, 631
XceI RCATGY 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 702
ZrmI AGTACT 1 cut(s) 1222
Zsp2I ATGCAT 1 cut(s) 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.