Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Forward (+)

54253614 .. 54259813

Gene Structure 6200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGAGGTTTGGAATGGAGAACGATTACGAGGACGGCCAATGGATCGACGGCGAGTTCTTCTACCGTAAGCGCAAGGAGAGACGCGTACAGTCCAAAGACGATGCCCTGTACGGATACTCCGATGAAGAAGATGAAGAATATTCGGACGGATCCAGAAAACGCAGGAAGAAAGATCGCTACGTCGACTACACCAAGCCCATTAAATTTGTCTCCACTGAAAAGCTGGACAACAATTCCGATCAGAAGAAAACTGATCATGGCACTCCTGTCATTGGCTTTAACTCGACTGGCATGCGCGATGAAGCTGAAGATGATGATGGTGATGGTTTTCTGGCGACAGAGTTTGGGAGGAAGATAAAGGACGGAGCTGAGAGGAGACGTAAGAAGAAGGAAAAGCTGAAATTCAAGAATGAGATTCGAAAATGTTATGGAGATGAAGGAGGCATTGGGGATTTCGAGAAACACACCAAGGGCATAGGAAGGAAGATGTTTGAGAAGATGGGGTACACAGGAGGTGGACTCGAGAAGAATCAGCAAGGCATTGTGAGTCCTATTGAGGTTGGATCACTATCTTGGATTGAGAAAGAGTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

199

Amino Acids

23.12

Weight (kDa)

5.93

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP_N	PF12457	1 - 88	1.2e-14	Tuftelin interacting protein N terminal
G-patch	PF01585	157 - 189	6.7e-08	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	2 cut(s)	87, 300
AclWI	GGATC	4 cut(s)	53, 147, 160, 574
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	2 cut(s)	206, 404
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	3 cut(s)	90, 113, 509
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AluBI	AGCT	4 cut(s)	226, 308, 371, 400
AluI	AGCT	4 cut(s)	226, 308, 371, 400
Alw26I	GTCTC	3 cut(s)	76, 217, 373
AlwI	GGATC	4 cut(s)	53, 147, 160, 574
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	1 cut(s)	37
ApoI	RAATTY	2 cut(s)	206, 404
AspLEI	GCGC	2 cut(s)	75, 300
AsuHPI	GGTGA	1 cut(s)	335
AsuII	TTCGAA	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	524
BamHI	GGATCC	1 cut(s)	152
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
BccI	CCATC	3 cut(s)	314, 320, 496
BceAI	ACGGC	2 cut(s)	52, 67
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciVI	GTATCC	1 cut(s)	110
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	76, 217, 373
BfuI	GTATCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	507, 539
Bpu14I	TTCGAA	1 cut(s)	421
BsaBI	GATNNNNATC	1 cut(s)	571
BsaJI	CCNNGG	1 cut(s)	471
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	571
BseDI	CCNNGG	1 cut(s)	471
BseJI	GATNNNNATC	1 cut(s)	571
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	391
Bsh1236I	CGCG	2 cut(s)	87, 300
BshFI	GGCC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	3 cut(s)	76, 217, 373
BsmBI	CGTCTC	2 cut(s)	76, 373
BsnI	GGCC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	524
Bsp119I	TTCGAA	1 cut(s)	421
Bsp143I	GATC	6 cut(s)	45, 152, 175, 241, 256, 566
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	2 cut(s)	87, 300
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	4 cut(s)	53, 147, 160, 574
BspT104I	TTCGAA	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	6 cut(s)	45, 152, 175, 241, 256, 566
BssT1I	CCWWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	68, 93
BstBI	TTCGAA	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	2 cut(s)	372, 597
BstFNI	CGCG	2 cut(s)	87, 300
BstHHI	GCGC	2 cut(s)	75, 300
BstKTI	GATC	6 cut(s)	48, 155, 178, 244, 259, 569
BstMAI	GTCTC	3 cut(s)	76, 217, 373
BstMBI	GATC	6 cut(s)	45, 152, 175, 241, 256, 566
BstNSI	RCATGY	1 cut(s)	298
BstUI	CGCG	2 cut(s)	87, 300
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	296
CfoI	GCGC	2 cut(s)	75, 300
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	89, 112, 508
CviAII	CATG	2 cut(s)	260, 295
CviJI	RGCY	8 cut(s)	39, 199, 226, 279, 308, 371, 400, 596
CviKI_1	RGCY	8 cut(s)	39, 199, 226, 279, 308, 371, 400, 596
CviQI	GTAC	3 cut(s)	89, 112, 508
DdeI	CTNAG	2 cut(s)	372, 597
DpnI	GATC	6 cut(s)	47, 154, 177, 243, 258, 568
DpnII	GATC	6 cut(s)	45, 152, 175, 241, 256, 566
EaeI	YGGCCR	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
Esp3I	CGTCTC	2 cut(s)	76, 373
FaeI	CATG	2 cut(s)	263, 298
FaiI	YATR	4 cut(s)	261, 296, 432, 479
FatI	CATG	2 cut(s)	259, 294
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	186
GlaI	GCGC	2 cut(s)	74, 299
HaeIII	GGCC	1 cut(s)	39
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	2 cut(s)	75, 300
Hin1II	CATG	2 cut(s)	263, 298
Hin6I	GCGC	2 cut(s)	73, 298
HinP1I	GCGC	2 cut(s)	73, 298
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	4 cut(s)	418, 522, 532, 550
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	3 cut(s)	187, 510, 521
Hpy188I	TCNGA	4 cut(s)	124, 148, 241, 246
Hpy188III	TCNNGA	4 cut(s)	156, 409, 460, 526
Hpy8I	GTNNAC	3 cut(s)	187, 510, 521
Hpy99I	CGWCG	2 cut(s)	53, 188
HpyAV	CCTTC	3 cut(s)	385, 434, 477
HpyCH4III	ACNGT	2 cut(s)	68, 93
HpyCH4IV	ACGT	2 cut(s)	183, 382
HpyF3I	CTNAG	2 cut(s)	372, 597
HpySE526I	ACGT	2 cut(s)	183, 382
Hsp92II	CATG	2 cut(s)	263, 298
HspAI	GCGC	2 cut(s)	73, 298
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	6 cut(s)	45, 152, 175, 241, 256, 566
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	8 cut(s)	122, 151, 169, 212, 276, 282, 320, 498
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	2 cut(s)	183, 382
MalI	GATC	6 cut(s)	47, 154, 177, 243, 258, 568
MboI	GATC	6 cut(s)	45, 152, 175, 241, 256, 566
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	3 cut(s)	206, 235, 404
MluI	ACGCGT	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	516, 559
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	6 cut(s)	25, 345, 369, 437, 509, 553
MseI	TTAA	2 cut(s)	204, 282
MvnI	CGCG	2 cut(s)	87, 300
NdeII	GATC	6 cut(s)	45, 152, 175, 241, 256, 566
NlaIII	CATG	2 cut(s)	263, 298
NlaIV	GGNNCC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	421
PaeI	GCATGC	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	418, 532
PleI	GAGTC	2 cut(s)	516, 558
PpsI	GAGTC	2 cut(s)	516, 558
PspN4I	GGNNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	3 cut(s)	90, 113, 509
RsaNI	GTAC	3 cut(s)	89, 112, 508
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	204, 282
Sau3AI	GATC	6 cut(s)	45, 152, 175, 241, 256, 566
SchI	GAGTC	2 cut(s)	516, 559
SetI	ASST	9 cut(s)	11, 186, 228, 310, 373, 385, 402, 520, 564
SfaNI	GCATC	1 cut(s)	94
Sfr274I	CTCGAG	1 cut(s)	524
SfuI	TTCGAA	1 cut(s)	421
SlaI	CTCGAG	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	3 cut(s)	206, 235, 404
SspI	AATATT	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	68, 93
TaiI	ACGT	2 cut(s)	186, 385
TaqI	TCGA	6 cut(s)	48, 186, 287, 421, 459, 525
TasI	AATT	3 cut(s)	206, 235, 404
TfiI	GAWTC	2 cut(s)	418, 532
Tru1I	TTAA	2 cut(s)	204, 282
Tru9I	TTAA	2 cut(s)	204, 282
TscAI	CASTG	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	141, 150, 318, 453
TspGWI	ACGGA	3 cut(s)	129, 165, 381
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	206, 404
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.