Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Reverse (-)

55198855 .. 55199627

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG352300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAACAAGACTACCACGGCTCCAGAAAACGCAGGAGACAAGACGGCAACGTCGATGACCTCACCAAGGCATTCAATTTCAACAATGGCGATGGCCTTGGTCTCACTGCTGGAATCGGGATGAAGATGCTGAAGAACATGGGCTACAAAGGAGGCGGTCTTGGCAAGGACGAACAGGGAATGCTCAACCCCATTCAACCCAAATTGAGGCCAAAGAATTTGGGCATGGGCTTCAACGACACCAAAACCAAGCTGCCCAATTTGCAAGAAGAATCGGAGCCCACAAAGCCTCCGCCCACCACCACCATGCCAACTTGGAAGAAGAACGTAATTAACAAGCAGCAGAAGGATTTCTGTTTGGCAGAGTTCTTGGCCCAGAAGATGGAAGAGGAACAGAATGTTGAGGCCGTCGAAAATTCGGAGAATTTGAATGCGCAGGAGGAAGATGGTGATGATGTTCCGATGCCCAATTTGAACAATGAGATCAGTGCTGTTTTGAACCGACTGAAAGAAGCAAATTCCATGGGAGAATTGACACTGGAAGCGCTGGCCAAGGAGTTTGGTGACATTCGGAGGGGTTGCACTGACCATTGGTTGGGATCCTCTGCAGAATCCATGGCATGGTTTCGACATTGTGTCCACCTGGAAGGGTTTGCTTCATGGAGAGGGGGAGAGAGAGGAATGTTATTATACCCAATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

234

Amino Acids

26.17

Weight (kDa)

5.39

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	37 - 77	7.6e-13	G-patch domain
G-patch_2	PF12656	39 - 80	4.3e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
Acc16I	TGCGCA	1 cut(s)	435
AccB7I	CCANNNNNTGG	3 cut(s)	382, 595, 621
AciI	CCGC	2 cut(s)	156, 293
AclWI	GGATC	2 cut(s)	594, 607
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	4 cut(s)	217, 415, 424, 517
AcuI	CTGAAG	1 cut(s)	152
AfeI	AGCGCT	1 cut(s)	546
AfiI	CCNNNNNNNGG	5 cut(s)	67, 207, 382, 595, 621
AgsI	TTSAA	7 cut(s)	76, 82, 197, 235, 430, 475, 499
AhdI	GACNNNNNGTC	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	642
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw26I	GTCTC	2 cut(s)	31, 107
AlwI	GGATC	2 cut(s)	594, 607
Aor51HI	AGCGCT	1 cut(s)	546
AoxI	GGCC	5 cut(s)	94, 209, 372, 405, 549
ApeKI	GCWGC	2 cut(s)	253, 340
ApoI	RAATTY	4 cut(s)	217, 415, 424, 517
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	436, 547
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	3 cut(s)	55, 461, 575
BalI	TGGCCA	1 cut(s)	551
BamHI	GGATCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	240, 352
BccI	CCATC	3 cut(s)	86, 376, 440
BceAI	ACGGC	3 cut(s)	34, 61, 392
BciT130I	CCWGG	1 cut(s)	644
BcoDI	GTCTC	2 cut(s)	31, 107
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	548
BisI	GCNGC	2 cut(s)	254, 341
BlsI	GCNGC	2 cut(s)	255, 342
Bme1390I	CCNGG	1 cut(s)	644
BmeRI	GACNNNNNGTC	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	3 cut(s)	22, 279, 601
BmrFI	CCNGG	1 cut(s)	644
BmsI	GCATC	2 cut(s)	117, 453
BpmI	CTGGAG	1 cut(s)	7
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	6 cut(s)	16, 66, 97, 522, 552, 615
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 274, 304
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 207, 382, 595, 621
Bse1I	ACTGG	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	644
BseDI	CCNNGG	6 cut(s)	16, 66, 97, 522, 552, 615
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	5 cut(s)	67, 207, 382, 595, 621
BseNI	ACTGG	1 cut(s)	543
BseXI	GCAGC	2 cut(s)	240, 352
BshFI	GGCC	5 cut(s)	96, 211, 374, 407, 551
BslI	CCNNNNNNNGG	5 cut(s)	67, 207, 382, 595, 621
BsmAI	GTCTC	2 cut(s)	31, 107
BsmI	GAATGC	3 cut(s)	71, 186, 436
BsnI	GGCC	5 cut(s)	96, 211, 374, 407, 551
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	483, 599
Bsp19I	CCATGG	2 cut(s)	522, 615
BspACI	CCGC	2 cut(s)	156, 293
BspANI	GGCC	5 cut(s)	96, 211, 374, 407, 551
BspLI	GGNNCC	3 cut(s)	22, 279, 601
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	2 cut(s)	594, 607
BspTNI	GGTCTC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	6 cut(s)	16, 66, 97, 522, 552, 615
BssMI	GATC	2 cut(s)	483, 599
BssT1I	CCWWGG	5 cut(s)	66, 97, 522, 552, 615
Bst2UI	CCWGG	1 cut(s)	644
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	549
BstDSI	CCRYGG	3 cut(s)	16, 522, 615
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	2 cut(s)	436, 547
BstKTI	GATC	2 cut(s)	486, 602
BstMAI	GTCTC	2 cut(s)	31, 107
BstMBI	GATC	2 cut(s)	483, 599
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 262, 286
BstNI	CCWGG	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	642
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	240, 352
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
BsuRI	GGCC	5 cut(s)	96, 211, 374, 407, 551
BtgI	CCRYGG	3 cut(s)	16, 522, 615
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	4 cut(s)	105, 493, 536, 582
Cac8I	GCNNGC	1 cut(s)	549
CfoI	GCGC	2 cut(s)	436, 547
Cfr13I	GGNCC	1 cut(s)	373
CviAII	CATG	7 cut(s)	139, 226, 307, 523, 616, 621, 660
DpnI	GATC	2 cut(s)	485, 601
DpnII	GATC	2 cut(s)	483, 599
DrdI	GACNNNNNNGTC	1 cut(s)	50
DriI	GACNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	381
Eam1105I	GACNNNNNGTC	1 cut(s)	635
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	1 cut(s)	282
Eco130I	CCWWGG	5 cut(s)	66, 97, 522, 552, 615
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	107
Eco47III	AGCGCT	1 cut(s)	546
Eco57I	CTGAAG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	642
EcoT14I	CCWWGG	5 cut(s)	66, 97, 522, 552, 615
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	5 cut(s)	66, 97, 522, 552, 615
FaeI	CATG	7 cut(s)	142, 229, 310, 526, 619, 624, 663
FaiI	YATR	8 cut(s)	140, 227, 308, 524, 617, 622, 661, 691
FatI	CATG	7 cut(s)	138, 225, 306, 522, 615, 620, 659
Fnu4HI	GCNGC	2 cut(s)	254, 341
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	254, 341
FspI	TGCGCA	1 cut(s)	435
GlaI	GCGC	2 cut(s)	435, 546
GluI	GCNGC	2 cut(s)	254, 341
GsuI	CTGGAG	1 cut(s)	7
HaeII	RGCGCY	1 cut(s)	548
HaeIII	GGCC	5 cut(s)	96, 211, 374, 407, 551
HhaI	GCGC	2 cut(s)	436, 547
Hin1II	CATG	7 cut(s)	142, 229, 310, 526, 619, 624, 663
Hin6I	GCGC	2 cut(s)	434, 545
HinP1I	GCGC	2 cut(s)	434, 545
HinfI	GANTC	3 cut(s)	114, 272, 611
HphI	GGTGA	3 cut(s)	55, 461, 575
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	4 cut(s)	277, 421, 462, 573
Hpy188III	TCNNGA	2 cut(s)	24, 118
Hpy8I	GTNNAC	1 cut(s)	640
Hpy99I	CGWCG	2 cut(s)	56, 413
HpyAV	CCTTC	2 cut(s)	340, 641
HpyCH4IV	ACGT	2 cut(s)	51, 327
HpyCH4V	TGCA	3 cut(s)	265, 582, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 262, 286
HpySE526I	ACGT	2 cut(s)	51, 327
Hsp92II	CATG	7 cut(s)	142, 229, 310, 526, 619, 624, 663
HspAI	GCGC	2 cut(s)	434, 545
Kzo9I	GATC	2 cut(s)	483, 599
LmnI	GCTCC	2 cut(s)	26, 277
Lsp1109I	GCAGC	2 cut(s)	240, 352
LweI	GCATC	2 cut(s)	117, 453
MaeII	ACGT	2 cut(s)	51, 327
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	2 cut(s)	485, 601
MboI	GATC	2 cut(s)	483, 599
MboII	GAAGA	8 cut(s)	136, 145, 281, 331, 334, 391, 398, 455
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	282
MlsI	TGGCCA	1 cut(s)	551
MluNI	TGGCCA	1 cut(s)	551
Mox20I	TGGCCA	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	2 cut(s)	333, 703
MslI	CAYNNNNRTG	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	644
MunI	CAATTG	1 cut(s)	696
Mva1269I	GAATGC	3 cut(s)	71, 186, 436
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	3 cut(s)	162, 262, 286
NcoI	CCATGG	2 cut(s)	522, 615
NdeII	GATC	2 cut(s)	483, 599
NlaIII	CATG	7 cut(s)	142, 229, 310, 526, 619, 624, 663
NlaIV	GGNNCC	3 cut(s)	22, 279, 601
NmuCI	GTSAC	1 cut(s)	563
NsbI	TGCGCA	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	3 cut(s)	71, 186, 436
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	114, 272, 611
PflMI	CCANNNNNTGG	3 cut(s)	382, 595, 621
PkrI	GCNGC	2 cut(s)	255, 342
Psp6I	CCWGG	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	3 cut(s)	22, 279, 601
PspPI	GGNCC	1 cut(s)	373
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
PstI	CTGCAG	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	599
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	333, 703
SatI	GCNGC	2 cut(s)	254, 341
Sau3AI	GATC	2 cut(s)	483, 599
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	644
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	5 cut(s)	54, 63, 255, 330, 645
SfaNI	GCATC	2 cut(s)	117, 453
SfcI	CTRYAG	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	305
SsiI	CCGC	2 cut(s)	156, 293
StyD4I	CCNGG	1 cut(s)	642
StyI	CCWWGG	5 cut(s)	66, 97, 522, 552, 615
TaiI	ACGT	2 cut(s)	54, 330
TaqI	TCGA	3 cut(s)	54, 411, 628
TfiI	GAWTC	3 cut(s)	114, 272, 611
Tru1I	TTAA	2 cut(s)	333, 703
Tru9I	TTAA	2 cut(s)	333, 703
TscAI	CASTG	4 cut(s)	112, 493, 543, 589
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	2 cut(s)	253, 340
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	2 cut(s)	137, 648
TspRI	CASTG	4 cut(s)	112, 493, 543, 589
Van91I	CCANNNNNTGG	3 cut(s)	382, 595, 621
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	4 cut(s)	217, 415, 424, 517
XmnI	GAANNNNTTC	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.