Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Forward (+)

34882571 .. 34885218

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2565 bp

ATGGATGATTATCAGGAGATGGAGAGGTTCGGAATGGAGAACGATTACGAGGACCTCCAGTGGATCGGTGGCGAGGCCTATTACCGAAACCGCAAGAGTAAGCGCGTGCAGACCAAAGACGATGCCCTCTACGGCTCGTTCGCTGATTCCGATGACGATGAAGACGACGGCTCCAGGAAACGCCGCAAAGAGCGAAAGGCCGACTTCACAAAGCCCGTCAGTTTTGTCTCCACCGGCGTCGTCGTCCCCAACCAGGAAGCCGAGAGCGATTTAAAGCAACAGAGCGATGATAGTAGGCCTGATATTGATCCTGCTGCTACTTCAGGTTCTGGTCTAGGCTTCAATAATTCTGGTCTAGGGTTCAATAATTCTGGTTTAGGATTTGGTAATTCTAGTGGTTTAGGATTCGGTAATACTGGTGGTTTAGGATTCAATCATTCAGTAGGCAATGATGATGAGGAAGATGACAGCAGTTTTCTGCCTCGGTCTCGAAGAGATTTGGAATCTAAAGGAGCAATCAGCGGCGGGGATGGGGATTTGGGGGCCTTTGAGAAACACACAAAAGGCATTGGGATGAAGATGCTTGCAAAAATGGGATACAAAGGAGGTGGTCTTGGGAAGAACCAGCAAGGAATTCTTGCCCCCATTGAAGCCAAGTTGAGGCCAAAAAACATGGGTATGGGTTTTAATGATTACAAGGAAACCAAACAGCCCAGTGTGCAAGAATTGGATGAGGAAAAGCCCAAGAAGCAGTTGCCGGCTGCTACTGCCACCACCAAGAAGAGGAATTCCTGGAAGAAGATGGTTGCCGGCAGGACTAACAAGGAGCGGTATATATCTGCCAAGGAGTTGTTAGCTAAGAAAGAAGAAGAAGGTGCCGAGGTCTTTGTGCAGAAGGTGGTTGATATGCGGGGACCTCAAGTACGAGTTTTGACCAATTTGGAGAATTTGAATGCTGAGGAGAAGGCGAGGGAAGAAAATGTTCCAATGCCTGAGCTACAGCACAACTTGAGGTTGATTCTTGACATGGCTGAGCTTGACATCCAAAAGATTGATAGGGATTTGAGGAATGAGAGAGAGACTGCTATAAGCTTGAACCAGGAGAAAGAGAGATTGGAAGCTGAGGTGACTATGCAGAAACAGCACTTGGATAGCTTGGATGATATCACAACTGTGTTGGATCGACTGGGAGAAGAGAAAGCCATGGGAATATTGACGCTGGATTCTCTGGCAAAGAGTTTCAGTGACCTGCAGAGGAGGTATGCTGATGACTACAAGTTATGTAACTTGGCTTGCATTGCCTGTTCCTTTGCACTCCCTTTGTTTATCAGGATGTTTCAAGGTTGGGATCCTCTTCGGAACCCCTCTCATGGAATGGACGTGGTATCCACCTGGAAGGCTTTACTTCATGGGGAGGGGGAGTATGAGCGGTGCCTTGATATATGGGATTCTTCAATGTCTCCTTATACCCAATTGGTTTCCGAGGTTGTGGTACCAGCTGTGAGGATTGCTGGAGTAAATACTTGGCAGCCTAAGGACCCAGAACCCATGCTTCGTTTTTTGGAGTCTTGGGAGAAATTGCTGCCTGCTCCTGTTCTTAATAGCATAGTGGATATGGTAGTCTTCCCCAAATTGAAGGAGGCAGTAGACTTTTGGGAACCTCACCGGGACACAGTTCCCATCCATGTCTGGGTGCATCCATGGCTACCACTATTAGGACACAAGCTGGAGGAGGTGTACCACACAATACGCTACAAGTTGAGTAATGTTCTAGGTGCATGGCACCCCAGTGATGGATCTGCTTATACAATACTCTCTCCTTGGAAAAAGGTTTTCGATTCTGCAAGTTGGGAACAGCTAATGCATCGATTTATAGTACCCAAATTGCAGCTTGTTTTGCAAGACTTCCAAGTAAACCCTGCAGATCAGAGACTTGATCAGTTTAATTGGGTCATGAGTTGGGCTTCTGCTATTCCAATTCATCTAATGGTAGATATGTTGGAGAAGTTTTTCTTCCCCAAGTGGCTACATGTTTTATATCACTGGTTAATATCAAACCCGAACTTTGAAGAGGTTTTGAATTGGTATAAAGGTTGGAAGGAACTTATATCTGAAGAGCTTCACGCAAATGAAAGTATCCGCTATCAGCTTAATTGTGGCCTTGACATGATGAATCGTGCTGTTGAGGGTATGGAGGTGGTTCAACCTGGTTTGAAAGAGAATATTAGCTACCTCAGGGTGCTTGAGCAAAGGCAATTTGAGGCACAGCAAAAAGCAGCAGCGGCCCATGCAAATTTGGGTGGCGCAGCCCATATTGACGGTGGTGGTCACGAGATGACCCTGAAAGATGTTATTGAAGCCCATGCACAGCAGAATGGGTTGCTATTTAGGCCGAAGCCTACTAGGACGCATAATGGCCACCAGATTTACGGGTTTGGTAATGTAAGCATAATAGTTGACTCTCTAAATCAAAAGGTGTATGCCCAAACAGAGGACACTTGGTCCCTTGTATCCCTTGAGAAGTTGCTTGACCTGCACAATACTTCTCTTACAAGAAGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

854

Amino Acids

96.95

Weight (kDa)

5.56

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP_N	PF12457	2 - 97	5.5e-21	Tuftelin interacting protein N terminal
G-patch	PF01585	187 - 228	1.5e-14	G-patch domain
GCFC	PF07842	407 - 679	2.4e-91	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1257, 2541
Acc65I	GGTACC	1 cut(s)	1492
AccB1I	GGYRCC	4 cut(s)	875, 1431, 1492, 1782
AccBSI	CCGCTC	2 cut(s)	829, 1429
AccI	GTMKAC	1 cut(s)	1647
AccII	CGCG	1 cut(s)	105
AciI	CCGC	9 cut(s)	91, 184, 522, 525, 829, 910, 1429, 2140, 2282
AclWI	GGATC	6 cut(s)	71, 302, 1188, 1343, 1356, 1804
AcoI	YGGCCR	1 cut(s)	2416
AcsI	RAATTY	4 cut(s)	633, 787, 946, 2293
AcuI	CTGAAG	2 cut(s)	306, 2133
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	4 cut(s)	924, 1494, 1739, 1878
AfiI	CCNNNNNNNGG	8 cut(s)	253, 660, 783, 1370, 1690, 1715, 1793, 2491
AflIII	ACRYGT	1 cut(s)	2029
AhdI	GACNNNNNGTC	1 cut(s)	2500
AjiI	CACGTC	1 cut(s)	1381
AjnI	CCWGG	6 cut(s)	173, 252, 791, 1098, 1391, 2206
AjuI	GAANNNNNNNTTGG	4 cut(s)	1097, 1129, 1130, 1162
AleI	CACNNNNGTG	2 cut(s)	1172, 1788
Alw26I	GTCTC	5 cut(s)	232, 492, 1073, 1464, 1924
AlwI	GGATC	6 cut(s)	71, 302, 1188, 1343, 1356, 1804
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	9 cut(s)	75, 198, 296, 543, 662, 2158, 2283, 2390, 2416
ApeKI	GCWGC	8 cut(s)	314, 761, 1528, 1582, 1888, 2276, 2279, 2306
ApoI	RAATTY	4 cut(s)	633, 787, 946, 2293
Asp700I	GAANNNNTTC	3 cut(s)	981, 2009, 2118
Asp718I	GGTACC	1 cut(s)	1492
AspLEI	GCGC	2 cut(s)	105, 2306
AspS9I	GGNCC	6 cut(s)	52, 543, 914, 1537, 2284, 2502
AsuC2I	CCSGG	1 cut(s)	1667
AsuHPI	GGTGA	2 cut(s)	1138, 1655
AvaII	GGWCC	4 cut(s)	52, 914, 1537, 2502
AxyI	CCTNAGG	2 cut(s)	1533, 2234
BalI	TGGCCA	1 cut(s)	2418
BamHI	GGATCC	1 cut(s)	1348
BanI	GGYRCC	4 cut(s)	875, 1431, 1492, 1782
BauI	CACGAG	1 cut(s)	2330
BbsI	GAAGAC	2 cut(s)	168, 1615
BbvCI	CCTCAGC	2 cut(s)	957, 1122
BbvI	GCAGC	8 cut(s)	301, 748, 1540, 1569, 1900, 2288, 2291, 2318
BccI	CCATC	5 cut(s)	13, 524, 796, 1688, 1787
BceAI	ACGGC	2 cut(s)	148, 184
BciT130I	CCWGG	6 cut(s)	175, 254, 793, 1100, 1393, 2208
BciVI	GTATCC	4 cut(s)	590, 1396, 2147, 2521
BclI	TGATCA	1 cut(s)	1936
BcnI	CCSGG	1 cut(s)	1667
BcoDI	GTCTC	5 cut(s)	232, 492, 1073, 1464, 1924
BfaI	CTAG	5 cut(s)	335, 356, 393, 1772, 2403
BfmI	CTRYAG	3 cut(s)	998, 1250, 1920
BfuAI	ACCTGC	2 cut(s)	1257, 2541
BfuI	GTATCC	4 cut(s)	590, 1396, 2147, 2521
BlpI	GCTNAGC	1 cut(s)	1032
Bme1390I	CCNGG	7 cut(s)	175, 254, 793, 1100, 1393, 1667, 2208
Bme18I	GGWCC	4 cut(s)	52, 914, 1537, 2502
BmeRI	GACNNNNNGTC	1 cut(s)	2500
BmgBI	CACGTC	1 cut(s)	1381
BmgT120I	GGNCC	6 cut(s)	52, 543, 914, 1537, 2284, 2502
BmrFI	CCNGG	7 cut(s)	175, 254, 793, 1100, 1393, 1667, 2208
BmrI	ACTGGG	3 cut(s)	708, 1196, 1782
BmsI	GCATC	4 cut(s)	112, 570, 1705, 1873
BmuI	ACTGGG	3 cut(s)	708, 1196, 1782
BpiI	GAAGAC	2 cut(s)	168, 1615
BpmI	CTGGAG	4 cut(s)	41, 157, 1533, 1748
Bpu10I	CCTNAGC	3 cut(s)	957, 993, 1122
Bpu1102I	GCTNAGC	1 cut(s)	1032
BpuEI	CTTGAG	4 cut(s)	903, 1030, 2264, 2537
BpuMI	CCSGG	1 cut(s)	1667
Bsa29I	ATCGAT	1 cut(s)	1867
BsaBI	GATNNNNATC	2 cut(s)	9, 306
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	7 cut(s)	482, 843, 879, 1203, 1482, 1700, 1820
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 185, 1406, 1436, 1721, 1751
Bsc4I	CCNNNNNNNGG	8 cut(s)	253, 660, 783, 1370, 1690, 1715, 1793, 2491
Bse118I	RCCGGY	3 cut(s)	233, 757, 809
Bse1I	ACTGG	6 cut(s)	58, 421, 714, 1191, 1788, 2048
Bse21I	CCTNAGG	2 cut(s)	1533, 2234
Bse3DI	GCAATG	2 cut(s)	454, 1296
Bse8I	GATNNNNATC	2 cut(s)	9, 306
BseBI	CCWGG	6 cut(s)	175, 254, 793, 1100, 1393, 2208
BseCI	ATCGAT	1 cut(s)	1867
BseDI	CCNNGG	7 cut(s)	482, 843, 879, 1203, 1482, 1700, 1820
BseGI	GGATG	9 cut(s)	10, 535, 579, 736, 1041, 1165, 1338, 1680, 1696
BseJI	GATNNNNATC	2 cut(s)	9, 306
BseLI	CCNNNNNNNGG	8 cut(s)	253, 660, 783, 1370, 1690, 1715, 1793, 2491
BseMI	GCAATG	2 cut(s)	454, 1296
BseMII	CTCAG	5 cut(s)	948, 984, 1023, 1113, 2248
BseNI	ACTGG	6 cut(s)	58, 421, 714, 1191, 1788, 2048
BseRI	GAGGAG	3 cut(s)	974, 1270, 1745
BseXI	GCAGC	8 cut(s)	301, 748, 1540, 1569, 1900, 2288, 2291, 2318
BsgI	GTGCAG	3 cut(s)	128, 911, 2519
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	9 cut(s)	77, 200, 298, 545, 664, 2160, 2285, 2392, 2418
BshNI	GGYRCC	4 cut(s)	875, 1431, 1492, 1782
BshVI	ATCGAT	1 cut(s)	1867
BsiSI	CCGG	4 cut(s)	234, 758, 810, 1666
BslFI	GGGAC	4 cut(s)	230, 927, 1682, 2488
BslI	CCNNNNNNNGG	8 cut(s)	253, 660, 783, 1370, 1690, 1715, 1793, 2491
BsmAI	GTCTC	5 cut(s)	232, 492, 1073, 1464, 1924
BsmFI	GGGAC	4 cut(s)	230, 927, 1682, 2488
BsmI	GAATGC	1 cut(s)	958
BsnI	GGCC	9 cut(s)	77, 200, 298, 545, 664, 2160, 2285, 2392, 2418
Bso31I	GGTCTC	1 cut(s)	492
Bsp143I	GATC	7 cut(s)	63, 307, 1180, 1348, 1796, 1924, 1936
Bsp1720I	GCTNAGC	1 cut(s)	1032
Bsp19I	CCATGG	2 cut(s)	1203, 1700
BspACI	CCGC	9 cut(s)	91, 184, 522, 525, 829, 910, 1429, 2140, 2282
BspANI	GGCC	9 cut(s)	77, 200, 298, 545, 664, 2160, 2285, 2392, 2418
BspCNI	CTCAG	5 cut(s)	949, 985, 1024, 1114, 2247
BspDI	ATCGAT	1 cut(s)	1867
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	1953
BspMAI	CTGCAG	2 cut(s)	1254, 1924
BspMI	ACCTGC	2 cut(s)	1257, 2541
BspPI	GGATC	6 cut(s)	71, 302, 1188, 1343, 1356, 1804
BspQI	GCTCTTC	1 cut(s)	2109
BspT107I	GGYRCC	4 cut(s)	875, 1431, 1492, 1782
BspTNI	GGTCTC	1 cut(s)	492
BsrBI	CCGCTC	2 cut(s)	829, 1429
BsrDI	GCAATG	2 cut(s)	454, 1296
BsrFI	RCCGGY	3 cut(s)	233, 757, 809
BsrI	ACTGG	6 cut(s)	58, 421, 714, 1191, 1788, 2048
BssAI	RCCGGY	3 cut(s)	233, 757, 809
BssECI	CCNNGG	7 cut(s)	482, 843, 879, 1203, 1482, 1700, 1820
BssMI	GATC	7 cut(s)	63, 307, 1180, 1348, 1796, 1924, 1936
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	2330
BssT1I	CCWWGG	4 cut(s)	843, 1203, 1700, 1820
Bst2BI	CACGAG	1 cut(s)	2330
Bst2UI	CCWGG	6 cut(s)	175, 254, 793, 1100, 1393, 2208
Bst4CI	ACNGT	3 cut(s)	1174, 1675, 2321
Bst6I	CTCTTC	6 cut(s)	487, 776, 1188, 1359, 2064, 2109
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	6 cut(s)	107, 585, 759, 811, 1294, 1587
BstDEI	CTNAG	7 cut(s)	858, 957, 993, 1032, 1122, 1533, 2234
BstDSI	CCRYGG	2 cut(s)	1203, 1700
BstF5I	GGATG	9 cut(s)	10, 535, 579, 736, 1041, 1165, 1338, 1680, 1696
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	105, 2306
BstKTI	GATC	7 cut(s)	66, 310, 1183, 1351, 1799, 1927, 1939
BstMAI	GTCTC	5 cut(s)	232, 492, 1073, 1464, 1924
BstMBI	GATC	7 cut(s)	63, 307, 1180, 1348, 1796, 1924, 1936
BstNI	CCWGG	6 cut(s)	175, 254, 793, 1100, 1393, 2208
BstNSI	RCATGY	1 cut(s)	2033
BstSCI	CCNGG	7 cut(s)	173, 252, 791, 1098, 1391, 1665, 2206
BstSFI	CTRYAG	3 cut(s)	998, 1250, 1920
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	8 cut(s)	301, 748, 1540, 1569, 1900, 2288, 2291, 2318
BstV2I	GAAGAC	2 cut(s)	168, 1615
BstX2I	RGATCY	2 cut(s)	1348, 1796
BstYI	RGATCY	2 cut(s)	1348, 1796
Bsu15I	ATCGAT	1 cut(s)	1867
Bsu36I	CCTNAGG	2 cut(s)	1533, 2234
BsuI	GTATCC	4 cut(s)	590, 1396, 2147, 2521
BsuRI	GGCC	9 cut(s)	77, 200, 298, 545, 664, 2160, 2285, 2392, 2418
BsuTUI	ATCGAT	1 cut(s)	1867
BtgI	CCRYGG	2 cut(s)	1203, 1700
BtgZI	GCGATG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	1381
BtsCI	GGATG	9 cut(s)	10, 535, 579, 736, 1041, 1165, 1338, 1680, 1696
BtsIMutI	CAGTG	5 cut(s)	65, 721, 1249, 1795, 2041
BveI	ACCTGC	2 cut(s)	1257, 2541
Cac8I	GCNNGC	6 cut(s)	107, 585, 759, 811, 1294, 1587
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	1953
CfoI	GCGC	2 cut(s)	105, 2306
Cfr10I	RCCGGY	3 cut(s)	233, 757, 809
Cfr13I	GGNCC	6 cut(s)	52, 543, 914, 1537, 2284, 2502
ClaI	ATCGAT	1 cut(s)	1867
CseI	GACGC	3 cut(s)	226, 1225, 2416
CsiI	ACCWGGT	1 cut(s)	2206
Csp6I	GTAC	4 cut(s)	923, 1493, 1738, 1877
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviQI	GTAC	4 cut(s)	923, 1493, 1738, 1877
DdeI	CTNAG	7 cut(s)	858, 957, 993, 1032, 1122, 1533, 2234
DpnI	GATC	7 cut(s)	65, 309, 1182, 1350, 1798, 1926, 1938
DpnII	GATC	7 cut(s)	63, 307, 1180, 1348, 1796, 1924, 1936
DraI	TTTAAA	1 cut(s)	273
DriI	GACNNNNNGTC	1 cut(s)	2500
EaeI	YGGCCR	1 cut(s)	2416
Eam1104I	CTCTTC	6 cut(s)	487, 776, 1188, 1359, 2064, 2109
Eam1105I	GACNNNNNGTC	1 cut(s)	2500
EarI	CTCTTC	6 cut(s)	487, 776, 1188, 1359, 2064, 2109
Eco130I	CCWWGG	4 cut(s)	843, 1203, 1700, 1820
Eco147I	AGGCCT	2 cut(s)	77, 298
Eco31I	GGTCTC	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	1165
Eco47I	GGWCC	4 cut(s)	52, 914, 1537, 2502
Eco57I	CTGAAG	2 cut(s)	306, 2133
Eco81I	CCTNAGG	2 cut(s)	1533, 2234
EcoO109I	RGGNCCY	4 cut(s)	52, 543, 914, 1537
EcoRI	GAATTC	2 cut(s)	633, 787
EcoRII	CCWGG	6 cut(s)	173, 252, 791, 1098, 1391, 2206
EcoRV	GATATC	1 cut(s)	1165
EcoT14I	CCWWGG	4 cut(s)	843, 1203, 1700, 1820
EcoT22I	ATGCAT	1 cut(s)	1866
ErhI	CCWWGG	4 cut(s)	843, 1203, 1700, 1820
FalI	AAGNNNNNCTT	6 cut(s)	188, 220, 621, 653, 1997, 2029
FaqI	GGGAC	4 cut(s)	230, 927, 1682, 2488
FauI	CCCGC	2 cut(s)	518, 903
FbaI	TGATCA	1 cut(s)	1936
FblI	GTMKAC	1 cut(s)	1647
FokI	GGATG	9 cut(s)	17, 542, 586, 743, 1028, 1172, 1345, 1667, 1683
FspBI	CTAG	5 cut(s)	335, 356, 393, 1772, 2403
GlaI	GCGC	2 cut(s)	104, 2305
GsuI	CTGGAG	4 cut(s)	41, 157, 1533, 1748
HaeIII	GGCC	9 cut(s)	77, 200, 298, 545, 664, 2160, 2285, 2392, 2418
HapII	CCGG	4 cut(s)	234, 758, 810, 1666
HgaI	GACGC	3 cut(s)	226, 1225, 2416
HhaI	GCGC	2 cut(s)	105, 2306
Hin1I	GRCGYC	1 cut(s)	237
Hin6I	GCGC	2 cut(s)	103, 2304
HinP1I	GCGC	2 cut(s)	103, 2304
HincII	GTYRAC	1 cut(s)	2458
HindII	GTYRAC	1 cut(s)	2458
HindIII	AAGCTT	1 cut(s)	1090
HpaII	CCGG	4 cut(s)	234, 758, 810, 1666
HphI	GGTGA	2 cut(s)	1138, 1655
Hpy166II	GTNNAC	4 cut(s)	1648, 1738, 1915, 2458
Hpy188I	TCNGA	6 cut(s)	32, 151, 1359, 1483, 1929, 2113
Hpy188III	TCNNGA	6 cut(s)	14, 489, 1022, 1330, 1954, 2330
Hpy8I	GTNNAC	4 cut(s)	1648, 1738, 1915, 2458
Hpy99I	CGWCG	3 cut(s)	170, 242, 245
HpyAV	CCTTC	6 cut(s)	866, 889, 958, 1390, 1630, 2092
HpyCH4III	ACNGT	3 cut(s)	1174, 1675, 2321
HpyCH4IV	ACGT	1 cut(s)	1380
HpyF3I	CTNAG	7 cut(s)	858, 957, 993, 1032, 1122, 1533, 2234
HpySE526I	ACGT	1 cut(s)	1380
Hsp92I	GRCGYC	1 cut(s)	237
HspAI	GCGC	2 cut(s)	103, 2304
KpnI	GGTACC	1 cut(s)	1496
KroI	GCCGGC	2 cut(s)	757, 809
KroNI	GCCGGC	2 cut(s)	759, 811
Ksp22I	TGATCA	1 cut(s)	1936
Kzo9I	GATC	7 cut(s)	63, 307, 1180, 1348, 1796, 1924, 1936
LguI	GCTCTTC	1 cut(s)	2109
LmnI	GCTCC	4 cut(s)	176, 512, 826, 1594
Lsp1109I	GCAGC	8 cut(s)	301, 748, 1540, 1569, 1900, 2288, 2291, 2318
LweI	GCATC	4 cut(s)	112, 570, 1705, 1873
MabI	ACCWGGT	1 cut(s)	2206
MaeI	CTAG	5 cut(s)	335, 356, 393, 1772, 2403
MaeII	ACGT	1 cut(s)	1380
MaeIII	GTNAC	4 cut(s)	1126, 1244, 1283, 2327
MalI	GATC	7 cut(s)	65, 309, 1182, 1350, 1798, 1926, 1938
MbiI	CCGCTC	2 cut(s)	829, 1429
MboI	GATC	7 cut(s)	63, 307, 1180, 1348, 1796, 1924, 1936
MfeI	CAATTG	1 cut(s)	1472
MflI	RGATCY	2 cut(s)	1348, 1796
MlsI	TGGCCA	1 cut(s)	2418
MluNI	TGGCCA	1 cut(s)	2418
MlyI	GAGTC	2 cut(s)	1574, 2453
MmeI	TCCRAC	3 cut(s)	1158, 1980, 2075
Mox20I	TGGCCA	1 cut(s)	2418
Mph1103I	ATGCAT	1 cut(s)	1866
MroNI	GCCGGC	2 cut(s)	757, 809
MroXI	GAANNNNTTC	3 cut(s)	981, 2009, 2118
MscI	TGGCCA	1 cut(s)	2418
MseI	TTAA	6 cut(s)	272, 687, 1599, 1944, 2048, 2151
MslI	CAYNNNNRTG	5 cut(s)	572, 677, 1172, 1788, 2127
Msp20I	TGGCCA	1 cut(s)	2418
MspA1I	CMGCKG	3 cut(s)	522, 1499, 2282
MspI	CCGG	4 cut(s)	234, 758, 810, 1666
MspR9I	CCNGG	7 cut(s)	175, 254, 793, 1100, 1393, 1667, 2208
MunI	CAATTG	1 cut(s)	1472
Mva1269I	GAATGC	1 cut(s)	958
MvaI	CCWGG	6 cut(s)	175, 254, 793, 1100, 1393, 2208
MvnI	CGCG	1 cut(s)	105
NaeI	GCCGGC	2 cut(s)	759, 811
NciI	CCSGG	1 cut(s)	1667
NcoI	CCATGG	2 cut(s)	1203, 1700
NdeII	GATC	7 cut(s)	63, 307, 1180, 1348, 1796, 1924, 1936
NgoMIV	GCCGGC	2 cut(s)	757, 809
NmeAIII	GCCGAG	2 cut(s)	286, 904
NmuCI	GTSAC	3 cut(s)	1126, 1244, 2327
NsiI	ATGCAT	1 cut(s)	1866
NspI	RCATGY	1 cut(s)	2033
OliI	CACNNNNGTG	2 cut(s)	1172, 1788
PagI	TCATGA	1 cut(s)	1953
PceI	AGGCCT	2 cut(s)	77, 298
PciI	ACATGT	1 cut(s)	2029
PciSI	GCTCTTC	1 cut(s)	2109
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 162
PctI	GAATGC	1 cut(s)	958
PdiI	GCCGGC	2 cut(s)	759, 811
PdmI	GAANNNNTTC	3 cut(s)	981, 2009, 2118
PfeI	GAWTC	9 cut(s)	146, 405, 429, 503, 1018, 1223, 1448, 1838, 2173
PfoI	TCCNGGA	2 cut(s)	173, 791
PleI	GAGTC	2 cut(s)	1573, 2453
PpsI	GAGTC	2 cut(s)	1573, 2453
PpuMI	RGGWCCY	3 cut(s)	52, 914, 1537
PscI	ACATGT	1 cut(s)	2029
Psp5II	RGGWCCY	3 cut(s)	52, 914, 1537
Psp6I	CCWGG	6 cut(s)	173, 252, 791, 1098, 1391, 2206
PspGI	CCWGG	6 cut(s)	173, 252, 791, 1098, 1391, 2206
PspPI	GGNCC	6 cut(s)	52, 543, 914, 1537, 2284, 2502
PspPPI	RGGWCCY	3 cut(s)	52, 914, 1537
PstI	CTGCAG	2 cut(s)	1254, 1924
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	1348, 1796
PvuII	CAGCTG	1 cut(s)	1499
RsaI	GTAC	4 cut(s)	924, 1494, 1739, 1878
RsaNI	GTAC	4 cut(s)	923, 1493, 1738, 1877
RseI	CAYNNNNRTG	5 cut(s)	572, 677, 1172, 1788, 2127
SapI	GCTCTTC	1 cut(s)	2109
SaqAI	TTAA	6 cut(s)	272, 687, 1599, 1944, 2048, 2151
Sau3AI	GATC	7 cut(s)	63, 307, 1180, 1348, 1796, 1924, 1936
Sau96I	GGNCC	6 cut(s)	52, 543, 914, 1537, 2284, 2502
SchI	GAGTC	2 cut(s)	1574, 2453
ScrFI	CCNGG	7 cut(s)	175, 254, 793, 1100, 1393, 1667, 2208
SexAI	ACCWGGT	1 cut(s)	2206
SfaNI	GCATC	4 cut(s)	112, 570, 1705, 1873
SfcI	CTRYAG	3 cut(s)	998, 1250, 1920
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	4 cut(s)	52, 914, 1537, 2502
SmiMI	CAYNNNNRTG	5 cut(s)	572, 677, 1172, 1788, 2127
SmlI	CTYRAG	4 cut(s)	918, 1009, 2243, 2516
SmoI	CTYRAG	4 cut(s)	918, 1009, 2243, 2516
SseBI	AGGCCT	2 cut(s)	77, 298
SsiI	CCGC	9 cut(s)	91, 184, 522, 525, 829, 910, 1429, 2140, 2282
SspI	AATATT	2 cut(s)	1212, 2224
SspMI	CTAG	5 cut(s)	335, 356, 393, 1772, 2403
StuI	AGGCCT	2 cut(s)	77, 298
StyD4I	CCNGG	7 cut(s)	173, 252, 791, 1098, 1391, 1665, 2206
StyI	CCWWGG	4 cut(s)	843, 1203, 1700, 1820
TaaI	ACNGT	3 cut(s)	1174, 1675, 2321
TaiI	ACGT	1 cut(s)	1383
TaqI	TCGA	4 cut(s)	490, 1183, 1836, 1867
TaqII	GACCGA	1 cut(s)	474
TauI	GCSGC	3 cut(s)	186, 525, 2285
TfiI	GAWTC	9 cut(s)	146, 405, 429, 503, 1018, 1223, 1448, 1838, 2173
Tru1I	TTAA	6 cut(s)	272, 687, 1599, 1944, 2048, 2151
Tru9I	TTAA	6 cut(s)	272, 687, 1599, 1944, 2048, 2151
TscAI	CASTG	5 cut(s)	65, 721, 1249, 1795, 2048
TseFI	GTSAC	3 cut(s)	1126, 1244, 2327
TseI	GCWGC	8 cut(s)	314, 761, 1528, 1582, 1888, 2276, 2279, 2306
Tsp45I	GTSAC	3 cut(s)	1126, 1244, 2327
TspDTI	ATGAA	6 cut(s)	174, 590, 1397, 1970, 2145, 2186
TspRI	CASTG	5 cut(s)	65, 721, 1249, 1795, 2048
VpaK11BI	GGWCC	4 cut(s)	52, 914, 1537, 2502
XapI	RAATTY	4 cut(s)	633, 787, 946, 2293
XceI	RCATGY	1 cut(s)	2033
XcmI	CCANNNNNNNNNTGG	2 cut(s)	65, 2318
XmiI	GTMKAC	1 cut(s)	1647
XmnI	GAANNNNTTC	3 cut(s)	981, 2009, 2118
XspI	CTAG	5 cut(s)	335, 356, 393, 1772, 2403
Zsp2I	ATGCAT	1 cut(s)	1866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.