Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Forward (+)

13803686 .. 13805692

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011921

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGGAACAAGACTACCACGGCTCCAGAAAACGCAGGAGACAAGACGGCAACGTCGGTGACCTCACCAAGCCATTCAATTTCAACAATGGCGATGGCCTTGGTCTCACTGCTGGAATCGGGATGAAGATGCTGAAGAACATGGGCTACAAAGGAGGTGGTCTTGGCAAGGACGAACAGGGAATGCTCAACCCCATTCAACCCAAATTGAGGCCAAAGAATTTGGGCATGGGCTTCAACGACACCAAAACCAAGCTGCCCAATTTGCAACAAGAATCGGAGCCCACAAAGGCTGATGTTCCTCCGCCCACCACCACCACCACCACCACCATGCCAACTTGGAAGAAGAACGTAATTAACAAGCAGCAGAAGGATTTCAGTTTGGCAGAGTTCTTGGCCCAGAAGATGGAAGAGGAACAGAATGTTGAGGCCGTCGAAATTTCGGAGAATTTGAATGCTCAGGAGGAAGATGTTGATGACGTTCCGATGTCCAACTTGAACAATGAGATCAGTGCTGTTTTGAACCGACTGAAAGAAGCAAATTCCATGGGAGAATTGACACTGGAAGCGCTGGCCAAGGAGTTTGGTGACATTCGGAGGAGTTGCACTGACCACTGGTTGGGATCCTCTGCAGAATCCATGGCATGGTTTCGACATTGTGTCCACCTGGAAGGGTTTGCTTCATGGAGAGGTTGGCAGGCTGAGGACCCCGAACCAATGCTCATGTTTTTGGAGTCTTGGAAGGAGCTACTGCCCACTTCTGTTGTTCATGACATTTTGGATATTGTGGTCTTGCCTGAATTGAAGGTTGCTATACAGTTGTGGGAACCAAGCTTGGGAACTGTTCCTATCCATTTGTGGGTGCATCCATGGCTACCATTACTGTTTGAATTGGGAGACAAGTATCAATTGGAGCTGGAGGAGTTGTTTGGAACAATGAGGTTGAAGTTGTGTGATTTTCTTAGCTCATGGCACCCGAGAGATGGGTCTGGTTATACCATAGTGTCACCGTGGAAAGCGGTGTTTGATTCTACCACTTGGGAACTGCTTATGCGTAGATATGTAGTTCCCAAGTTGGAGCTTGTGCTATTAGAAGATTTTGAAGTGAACCCTTTTAATCAGAAGCTTGATCAGTTTAATTGGGTCATGTGGTGGGCTTCTGCTATTCCTATGCATCTGATGGTCAATGTGATGGTCAAGGGCTTCTTCCCGAATTGGATAAAGGGTTTGCATTTCTGGTTGAAAGCCAATCCGAACTTTGAAGATGTTGCGGATTGGTATAGGGGTTGGAAGGAACTTATCCCCAAAGAGTTTCATGCGAATGAAAGTATTCGTTGTCAGCTTGAGTGTGGTCTTAGTATGATGAACCGGGCTGTTGAGGAGATGGAGGTTGCTCAAGCTGGTTTGGAAGAGAATTCTAGGGTAATTGAAAAAAGGCAGGGGAAAGCAGTACCAGCAGCCCAAGCAAACTTGGGTGGCCAAACCAACATGGATGGGATTGATCATGAGATGAATTTGAAAGAGAATGGTGAGATTGATCAAGTGCAATTTGAGGCAAAGAAGAGAGCAGCAGCTTTTTTAGCCAATGCGAAATTGGGCAGCACAACTGACGTGGATGACATTAATCATCAAATGACCCTGAAAGATGTTATTGAAGCTGAGGCGCAGGAACATGGCTTGCTATTTAGGCCTAAACCGGGGCGAATGTATGATGGTCACCAGGTATACGGCTTTGGTAACGTAAGCATAGTGGTGGACTTTCTAAAGGAGAAAATATATGCCCAAAAAGAAGCGACATGGTCTCTTGTGTCCCTTGAGAGGTTACTTGAGTTACACAAGAACAAGGAGACGATGAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

620

Amino Acids

70.69

Weight (kDa)

5.22

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	37 - 77	3e-12	G-patch domain
G-patch_2	PF12656	39 - 80	1.7e-06	G-patch domain
GCFC	PF07842	212 - 407	6.1e-47	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	969
AccB7I	CCANNNNNTGG	3 cut(s)	403, 616, 642
AccI	GTMKAC	1 cut(s)	1722
AciI	CCGC	3 cut(s)	302, 1016, 1268
AclWI	GGATC	2 cut(s)	615, 628
AcoI	YGGCCR	2 cut(s)	570, 1474
AcsI	RAATTY	6 cut(s)	217, 435, 445, 538, 1411, 1510
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	1449
AfeI	AGCGCT	1 cut(s)	567
AfiI	CCNNNNNNNGG	9 cut(s)	207, 403, 616, 642, 833, 856, 980, 1694, 1815
AhdI	GACNNNNNGTC	1 cut(s)	656
AjiI	CACGTC	1 cut(s)	1609
AjnI	CCWGG	2 cut(s)	663, 1716
Alw26I	GTCTC	5 cut(s)	31, 107, 888, 1803, 1838
AlwI	GGATC	2 cut(s)	615, 628
Ama87I	CYCGRG	1 cut(s)	973
Aor51HI	AGCGCT	1 cut(s)	567
AoxI	GGCC	7 cut(s)	94, 209, 393, 426, 570, 1474, 1685
ApeKI	GCWGC	6 cut(s)	253, 361, 1454, 1565, 1568, 1596
ApoI	RAATTY	6 cut(s)	217, 435, 445, 538, 1411, 1510
AseI	ATTAAT	1 cut(s)	1620
Asp700I	GAANNNNTTC	2 cut(s)	371, 1326
AspLEI	GCGC	2 cut(s)	568, 1663
AspS9I	GGNCC	2 cut(s)	394, 703
AsuC2I	CCSGG	2 cut(s)	1367, 1695
AsuHPI	GGTGA	6 cut(s)	55, 68, 596, 996, 1538, 1706
AvaI	CYCGRG	1 cut(s)	973
AvaII	GGWCC	1 cut(s)	703
BalI	TGGCCA	2 cut(s)	572, 1476
BamHI	GGATCC	1 cut(s)	620
BanI	GGYRCC	1 cut(s)	969
BanII	GRGCYC	1 cut(s)	282
BbvCI	CCTCAGC	2 cut(s)	699, 1656
BbvI	GCAGC	6 cut(s)	240, 373, 1466, 1577, 1580, 1608
BccI	CCATC	8 cut(s)	86, 397, 974, 1171, 1183, 1375, 1484, 1703
BceAI	ACGGC	4 cut(s)	34, 61, 413, 1741
BciT130I	CCWGG	2 cut(s)	665, 1718
BclI	TGATCA	3 cut(s)	1126, 1498, 1534
BcnI	CCSGG	2 cut(s)	1367, 1695
BcoDI	GTCTC	5 cut(s)	31, 107, 888, 1803, 1838
BfaI	CTAG	1 cut(s)	1416
BfmI	CTRYAG	1 cut(s)	627
BfoI	RGCGCY	1 cut(s)	569
BisI	GCNGC	6 cut(s)	254, 362, 1455, 1566, 1569, 1597
BlsI	GCNGC	6 cut(s)	255, 363, 1456, 1567, 1570, 1598
Bme1390I	CCNGG	4 cut(s)	665, 1367, 1695, 1718
Bme18I	GGWCC	1 cut(s)	703
BmeRI	GACNNNNNGTC	1 cut(s)	656
BmeT110I	CYCGRG	1 cut(s)	973
BmgBI	CACGTC	1 cut(s)	1609
BmgT120I	GGNCC	2 cut(s)	394, 703
BmiI	GGNNCC	6 cut(s)	22, 279, 622, 705, 825, 971
BmrFI	CCNGG	4 cut(s)	665, 1367, 1695, 1718
BmsI	GCATC	3 cut(s)	117, 871, 1180
BpmI	CTGGAG	2 cut(s)	7, 935
Bpu10I	CCTNAGC	3 cut(s)	456, 699, 1656
BpuEI	CTTGAG	4 cut(s)	1361, 1377, 1832, 1844
BpuMI	CCSGG	2 cut(s)	1367, 1695
BsaI	GGTCTC	2 cut(s)	107, 1803
BsaJI	CCNNGG	8 cut(s)	16, 97, 543, 573, 636, 866, 1007, 1694
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 908, 938
Bsc4I	CCNNNNNNNGG	9 cut(s)	207, 403, 616, 642, 833, 856, 980, 1694, 1815
Bse1I	ACTGG	2 cut(s)	564, 617
BseBI	CCWGG	2 cut(s)	665, 1718
BseDI	CCNNGG	8 cut(s)	16, 97, 543, 573, 636, 866, 1007, 1694
BseGI	GGATG	4 cut(s)	126, 862, 1495, 1618
BseLI	CCNNNNNNNGG	9 cut(s)	207, 403, 616, 642, 833, 856, 980, 1694, 1815
BseMII	CTCAG	3 cut(s)	470, 690, 1647
BseNI	ACTGG	2 cut(s)	564, 617
BseRI	GAGGAG	3 cut(s)	610, 932, 1391
BseXI	GCAGC	6 cut(s)	240, 373, 1466, 1577, 1580, 1608
BshFI	GGCC	7 cut(s)	96, 211, 395, 428, 572, 1476, 1687
BshNI	GGYRCC	1 cut(s)	969
BsiHKCI	CYCGRG	1 cut(s)	973
BsiSI	CCGG	2 cut(s)	1366, 1694
BslFI	GGGAC	1 cut(s)	1792
BslI	CCNNNNNNNGG	9 cut(s)	207, 403, 616, 642, 833, 856, 980, 1694, 1815
BsmAI	GTCTC	5 cut(s)	31, 107, 888, 1803, 1838
BsmBI	CGTCTC	1 cut(s)	1838
BsmFI	GGGAC	1 cut(s)	1792
BsmI	GAATGC	2 cut(s)	186, 457
BsnI	GGCC	7 cut(s)	96, 211, 395, 428, 572, 1476, 1687
Bso31I	GGTCTC	2 cut(s)	107, 1803
BsoBI	CYCGRG	1 cut(s)	973
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	504, 620, 1126, 1498, 1534
Bsp19I	CCATGG	3 cut(s)	543, 636, 866
BspACI	CCGC	3 cut(s)	302, 1016, 1268
BspANI	GGCC	7 cut(s)	96, 211, 395, 428, 572, 1476, 1687
BspCNI	CTCAG	3 cut(s)	469, 691, 1648
BspHI	TCATGA	2 cut(s)	766, 1501
BspLI	GGNNCC	6 cut(s)	22, 279, 622, 705, 825, 971
BspMAI	CTGCAG	1 cut(s)	631
BspPI	GGATC	2 cut(s)	615, 628
BspT107I	GGYRCC	1 cut(s)	969
BspTNI	GGTCTC	2 cut(s)	107, 1803
BsrI	ACTGG	2 cut(s)	564, 617
BssECI	CCNNGG	8 cut(s)	16, 97, 543, 573, 636, 866, 1007, 1694
BssMI	GATC	5 cut(s)	504, 620, 1126, 1498, 1534
BssNAI	GTATAC	1 cut(s)	1723
BssT1I	CCWWGG	5 cut(s)	97, 543, 573, 636, 866
Bst1107I	GTATAC	1 cut(s)	1723
Bst2UI	CCWGG	2 cut(s)	665, 1718
Bst4CI	ACNGT	4 cut(s)	816, 841, 882, 1008
Bst6I	CTCTTC	3 cut(s)	402, 1401, 1553
BstC8I	GCNNGC	3 cut(s)	570, 696, 1676
BstDEI	CTNAG	5 cut(s)	456, 699, 959, 1352, 1656
BstDSI	CCRYGG	5 cut(s)	16, 543, 636, 866, 1007
BstEII	GGTNACC	2 cut(s)	56, 1712
BstF5I	GGATG	4 cut(s)	126, 862, 1495, 1618
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	2 cut(s)	568, 1663
BstKTI	GATC	5 cut(s)	507, 623, 1129, 1501, 1537
BstMAI	GTCTC	5 cut(s)	31, 107, 888, 1803, 1838
BstMBI	GATC	5 cut(s)	504, 620, 1126, 1498, 1534
BstMWI	GCNNNNNNNGC	6 cut(s)	262, 868, 1451, 1460, 1577, 1684
BstNI	CCWGG	2 cut(s)	665, 1718
BstPI	GGTNACC	2 cut(s)	56, 1712
BstSCI	CCNGG	4 cut(s)	663, 1365, 1693, 1716
BstSFI	CTRYAG	1 cut(s)	627
BstV1I	GCAGC	6 cut(s)	240, 373, 1466, 1577, 1580, 1608
BstX2I	RGATCY	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	620
BstZ17I	GTATAC	1 cut(s)	1723
BsuRI	GGCC	7 cut(s)	96, 211, 395, 428, 572, 1476, 1687
BtgI	CCRYGG	5 cut(s)	16, 543, 636, 866, 1007
BtgZI	GCGATG	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	1609
BtsCI	GGATG	4 cut(s)	126, 862, 1495, 1618
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	5 cut(s)	105, 514, 557, 603, 610
Cac8I	GCNNGC	3 cut(s)	570, 696, 1676
CciI	TCATGA	2 cut(s)	766, 1501
CfoI	GCGC	2 cut(s)	568, 1663
Cfr13I	GGNCC	2 cut(s)	394, 703
CsiI	ACCWGGT	1 cut(s)	1716
Csp6I	GTAC	1 cut(s)	1448
CspCI	CAANNNNNGTGG	6 cut(s)	136, 171, 742, 777, 1590, 1625
CviQI	GTAC	1 cut(s)	1448
DdeI	CTNAG	5 cut(s)	456, 699, 959, 1352, 1656
DpnI	GATC	5 cut(s)	506, 622, 1128, 1500, 1536
DpnII	GATC	5 cut(s)	504, 620, 1126, 1498, 1534
DrdI	GACNNNNNNGTC	1 cut(s)	50
DriI	GACNNNNNGTC	1 cut(s)	656
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	2 cut(s)	570, 1474
Eam1104I	CTCTTC	3 cut(s)	402, 1401, 1553
Eam1105I	GACNNNNNGTC	1 cut(s)	656
EarI	CTCTTC	3 cut(s)	402, 1401, 1553
EciI	GGCGGA	1 cut(s)	291
Eco130I	CCWWGG	5 cut(s)	97, 543, 573, 636, 866
Eco147I	AGGCCT	1 cut(s)	1687
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	2 cut(s)	107, 1803
Eco47I	GGWCC	1 cut(s)	703
Eco47III	AGCGCT	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	973
Eco91I	GGTNACC	2 cut(s)	56, 1712
EcoO109I	RGGNCCY	1 cut(s)	703
EcoO65I	GGTNACC	2 cut(s)	56, 1712
EcoRI	GAATTC	1 cut(s)	1411
EcoRII	CCWGG	2 cut(s)	663, 1716
EcoT14I	CCWWGG	5 cut(s)	97, 543, 573, 636, 866
EcoT22I	ATGCAT	1 cut(s)	1173
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	5 cut(s)	97, 543, 573, 636, 866
Esp3I	CGTCTC	1 cut(s)	1838
FalI	AAGNNNNNCTT	2 cut(s)	1187, 1219
FaqI	GGGAC	1 cut(s)	1792
FbaI	TGATCA	3 cut(s)	1126, 1498, 1534
FblI	GTMKAC	1 cut(s)	1722
Fnu4HI	GCNGC	6 cut(s)	254, 362, 1455, 1566, 1569, 1597
FokI	GGATG	4 cut(s)	133, 849, 1502, 1625
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	6 cut(s)	254, 362, 1455, 1566, 1569, 1597
FspBI	CTAG	1 cut(s)	1416
GlaI	GCGC	2 cut(s)	567, 1662
GluI	GCNGC	6 cut(s)	254, 362, 1455, 1566, 1569, 1597
GsuI	CTGGAG	2 cut(s)	7, 935
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	7 cut(s)	96, 211, 395, 428, 572, 1476, 1687
HapII	CCGG	2 cut(s)	1366, 1694
HhaI	GCGC	2 cut(s)	568, 1663
Hin6I	GCGC	2 cut(s)	566, 1661
HinP1I	GCGC	2 cut(s)	566, 1661
HindIII	AAGCTT	2 cut(s)	829, 1121
HinfI	GANTC	5 cut(s)	114, 272, 632, 731, 1025
HpaII	CCGG	2 cut(s)	1366, 1694
HphI	GGTGA	6 cut(s)	55, 68, 596, 996, 1538, 1706
Hpy166II	GTNNAC	4 cut(s)	661, 1105, 1723, 1753
Hpy188I	TCNGA	8 cut(s)	277, 442, 483, 594, 1119, 1176, 1251, 1859
Hpy188III	TCNNGA	6 cut(s)	24, 118, 458, 767, 1207, 1502
Hpy8I	GTNNAC	4 cut(s)	661, 1105, 1723, 1753
Hpy99I	CGWCG	2 cut(s)	56, 434
HpyAV	CCTTC	5 cut(s)	361, 662, 733, 796, 1282
HpyCH4III	ACNGT	4 cut(s)	816, 841, 882, 1008
HpyCH4IV	ACGT	5 cut(s)	51, 348, 477, 1608, 1737
HpyCH4V	TGCA	7 cut(s)	265, 603, 629, 862, 1171, 1228, 1543
HpyF10VI	GCNNNNNNNGC	6 cut(s)	262, 868, 1451, 1460, 1577, 1684
HpyF3I	CTNAG	5 cut(s)	456, 699, 959, 1352, 1656
HpySE526I	ACGT	5 cut(s)	51, 348, 477, 1608, 1737
HspAI	GCGC	2 cut(s)	566, 1661
Ksp22I	TGATCA	3 cut(s)	1126, 1498, 1534
Kzo9I	GATC	5 cut(s)	504, 620, 1126, 1498, 1534
LmnI	GCTCC	5 cut(s)	26, 277, 742, 910, 1075
Lsp1109I	GCAGC	6 cut(s)	240, 373, 1466, 1577, 1580, 1608
LweI	GCATC	3 cut(s)	117, 871, 1180
MabI	ACCWGGT	1 cut(s)	1716
MaeI	CTAG	1 cut(s)	1416
MaeII	ACGT	5 cut(s)	51, 348, 477, 1608, 1737
MaeIII	GTNAC	7 cut(s)	56, 584, 1002, 1712, 1733, 1818, 1827
MalI	GATC	5 cut(s)	506, 622, 1128, 1500, 1536
MboI	GATC	5 cut(s)	504, 620, 1126, 1498, 1534
MfeI	CAATTG	1 cut(s)	905
MflI	RGATCY	1 cut(s)	620
MhlI	GDGCHC	1 cut(s)	282
MlsI	TGGCCA	2 cut(s)	572, 1476
MluNI	TGGCCA	2 cut(s)	572, 1476
MlyI	GAGTC	1 cut(s)	740
MmeI	TCCRAC	3 cut(s)	513, 1053, 1265
Mox20I	TGGCCA	2 cut(s)	572, 1476
Mph1103I	ATGCAT	1 cut(s)	1173
MroXI	GAANNNNTTC	2 cut(s)	371, 1326
MscI	TGGCCA	2 cut(s)	572, 1476
MseI	TTAA	4 cut(s)	354, 1113, 1134, 1620
MslI	CAYNNNNRTG	3 cut(s)	326, 1317, 1748
Msp20I	TGGCCA	2 cut(s)	572, 1476
MspI	CCGG	2 cut(s)	1366, 1694
MspR9I	CCNGG	4 cut(s)	665, 1367, 1695, 1718
MunI	CAATTG	1 cut(s)	905
Mva1269I	GAATGC	2 cut(s)	186, 457
MvaI	CCWGG	2 cut(s)	665, 1718
MwoI	GCNNNNNNNGC	6 cut(s)	262, 868, 1451, 1460, 1577, 1684
NciI	CCSGG	2 cut(s)	1367, 1695
NcoI	CCATGG	3 cut(s)	543, 636, 866
NdeII	GATC	5 cut(s)	504, 620, 1126, 1498, 1534
NlaIV	GGNNCC	6 cut(s)	22, 279, 622, 705, 825, 971
NmuCI	GTSAC	4 cut(s)	56, 584, 1002, 1712
NsiI	ATGCAT	1 cut(s)	1173
PagI	TCATGA	2 cut(s)	766, 1501
PceI	AGGCCT	1 cut(s)	1687
PctI	GAATGC	2 cut(s)	186, 457
PdmI	GAANNNNTTC	2 cut(s)	371, 1326
PfeI	GAWTC	4 cut(s)	114, 272, 632, 1025
PflFI	GACNNNGTC	1 cut(s)	1795
PflMI	CCANNNNNTGG	3 cut(s)	403, 616, 642
PkrI	GCNGC	6 cut(s)	255, 363, 1456, 1567, 1570, 1598
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
PpuMI	RGGWCCY	1 cut(s)	703
PshBI	ATTAAT	1 cut(s)	1620
Psp5II	RGGWCCY	1 cut(s)	703
Psp6I	CCWGG	2 cut(s)	663, 1716
PspEI	GGTNACC	2 cut(s)	56, 1712
PspGI	CCWGG	2 cut(s)	663, 1716
PspN4I	GGNNCC	6 cut(s)	22, 279, 622, 705, 825, 971
PspPI	GGNCC	2 cut(s)	394, 703
PspPPI	RGGWCCY	1 cut(s)	703
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
PstI	CTGCAG	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	620
PsyI	GACNNNGTC	1 cut(s)	1795
RsaI	GTAC	1 cut(s)	1449
RsaNI	GTAC	1 cut(s)	1448
RseI	CAYNNNNRTG	3 cut(s)	326, 1317, 1748
SaqAI	TTAA	4 cut(s)	354, 1113, 1134, 1620
SatI	GCNGC	6 cut(s)	254, 362, 1455, 1566, 1569, 1597
Sau3AI	GATC	5 cut(s)	504, 620, 1126, 1498, 1534
Sau96I	GGNCC	2 cut(s)	394, 703
SchI	GAGTC	1 cut(s)	740
ScrFI	CCNGG	4 cut(s)	665, 1367, 1695, 1718
SduI	GDGCHC	1 cut(s)	282
SexAI	ACCWGGT	1 cut(s)	1716
SfaNI	GCATC	3 cut(s)	117, 871, 1180
SfcI	CTRYAG	1 cut(s)	627
SinI	GGWCC	1 cut(s)	703
SmiMI	CAYNNNNRTG	3 cut(s)	326, 1317, 1748
SmlI	CTYRAG	4 cut(s)	1340, 1392, 1811, 1823
SmoI	CTYRAG	4 cut(s)	1340, 1392, 1811, 1823
SseBI	AGGCCT	1 cut(s)	1687
SsiI	CCGC	3 cut(s)	302, 1016, 1268
SspMI	CTAG	1 cut(s)	1416
StuI	AGGCCT	1 cut(s)	1687
StyD4I	CCNGG	4 cut(s)	663, 1365, 1693, 1716
StyI	CCWWGG	5 cut(s)	97, 543, 573, 636, 866
TaaI	ACNGT	4 cut(s)	816, 841, 882, 1008
TaiI	ACGT	5 cut(s)	54, 351, 480, 1611, 1740
TaqI	TCGA	2 cut(s)	432, 649
TfiI	GAWTC	4 cut(s)	114, 272, 632, 1025
Tru1I	TTAA	4 cut(s)	354, 1113, 1134, 1620
Tru9I	TTAA	4 cut(s)	354, 1113, 1134, 1620
TscAI	CASTG	5 cut(s)	112, 514, 564, 610, 617
TseFI	GTSAC	4 cut(s)	56, 584, 1002, 1712
TseI	GCWGC	6 cut(s)	253, 361, 1454, 1565, 1568, 1596
Tsp45I	GTSAC	4 cut(s)	56, 584, 1002, 1712
TspDTI	ATGAA	7 cut(s)	137, 669, 755, 1301, 1335, 1376, 1523
TspRI	CASTG	5 cut(s)	112, 514, 564, 610, 617
Tth111I	GACNNNGTC	1 cut(s)	1795
Van91I	CCANNNNNTGG	3 cut(s)	403, 616, 642
VpaK11BI	GGWCC	1 cut(s)	703
VspI	ATTAAT	1 cut(s)	1620
XapI	RAATTY	6 cut(s)	217, 435, 445, 538, 1411, 1510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1588
XmiI	GTMKAC	1 cut(s)	1722
XmnI	GAANNNNTTC	2 cut(s)	371, 1326
XspI	CTAG	1 cut(s)	1416
Zsp2I	ATGCAT	1 cut(s)	1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.