Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Forward (+)

13753074 .. 13755086

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGGAACAAGACTACCACGGCTCCAGAAAACGCAGGAGACAAGACGGCAACGTCGATGACCTCACCAAGCCATTCAATTTCAACAATGGCGATGGCCTTGGTCTTACTGCGGGAATCGGAATGAAGATGCTGAAGAACATGGGCTACAAAGGAGGCGGTCTTGGCAAGGACGAACAGGGAATGCTCAACCCCATTCAACCCAAATTGAGGCCAAAGAATTTGGGCATGGGCTTCAACGACACCAAAACCAAGCTGCCCAATTTGCAAGAACAATCGGAGCCCACAAAGGCTGATGTTCCTCCGCCCACCACCACCACCACCACCACCACCACCATGCCAACTTGGAAGAAGAACGTAATTAACAAGCAGCAGAAGGATTTCTGTTTGGCAGAGTTCTTGGCCCAGAAGATGGAAGAGGAACAGAATGTTGAGGCCGTCGAAAATTCGGGGAATTTAAATGCTCAGGAGGAAGATGGTGATGATGTTCCGATGCCCAATTTGAACAATGAGATCAGTGCTGTTTTGAACCGACTGAAAGAAGCAAATTCCATGGGAGAATTGACACTGGAAGCGCTGGCTGAGGAGTTTGGTGACATTCGGAGGAGTTGCACTGACCATTGTAAGTTAATTAACTTGTCTCGAATTGTGTTTTCATTTGCAAAGCCTCTGTTTAACAAGATGTTTCAGGGTTGGGATGCTCTGAAGAATCCATGGCATGGTTTCGACATTGTGTCCACCTGGAAGGGTTTGCTTCATGGAGAGGGGGAGAGAGAGGAATGTTATTATACCCAATTGGTTAAAGAGGTAGTGTTATCTGAGGTGAGGATGTCTGGCCTCAATAGTTGGCAGGCTGAGGACCCCGAACCAATGCTCATGTTTTTGGAGTCTTGGAAGGAGCTGCTGCCTACTCCTGTTGTTCATGACATATTGGATATGGTGGTCTTGCCTGAATTGAAGGTTGCTATACAGTTGTGGGAACTAAGCTTGGGAACTGTTCCTATCCATTTGTGGGTGCATCCATGGCTACCATTACTGTTTGAATTGGGAGACAAGTATCAATTGGAGCTGGAGGAGTTGTTTGGAACAATGAGGTTGAAGTTGTGTGATTTTCTTAGCTCATGGCACCCGAGAGATGGGTCTGGTTATACCATAGTGTCACCGTGGAAAGCGGTGTTTGATTCTACCACTTGGGAACTGCTTATGCATAGATATGTAGTTCCCAAGTTGGAGCTTGTGCTACTAGAAGATTTTGAAGTGAACCCCTTAAATCAGAAGCTTGATCAGTTTAATTGGGTCATGAGGTGGGCTTCTGCCATTCCTATGCATCTGATGGTCAATGTGATGGTCAAGGGCTTCTTCCCGAATTGGATAAAGGGTTTGCATTTCTGGTTGAAAGCCAATCCGAACTTTGAAGATGTTGCGGATTGGTATAGGGGTTGGAAGGAACTTATCCCCAAAGAGTTTCATGCGAATGAAAGTATTCGTGGTCAGCTTGAGCGTGGTCTTAGTATGATGAACCGGGCTGTTGAGGATATGGAGGCTGCTCAAGCTGATTTGAAAGGGAATTCTAGGGTAGTTGAAAAAAGGCAGGGGAAAGCAGTACCAGCAGCCCAAGCAAACTCCGGCGGCCAAACCAACATGGATGGCATTGATCATGAGATGAATTTGAAAGAGAATGGTAAGATTGATCAAGTGCAATTTGAGGCAAAGAAGAGAGCAGCAGCTTTTCTAGCCAATGCGAAATTGGGCAGCACAACTGACGTGGATGACATTAGTCATCAAATGACCCTGAAAGATGTTGTTGAAGCTGAGGCGCAGGAACATGGCTTGCTATTTAGGCCTAAACCTGGGCGAATGTTTGATGGTCACCAGGTATACGGCTTTGGTAACATAAGCATAATGGTGGACTTTCGAAAGGAGAAGATATATGCCCAAACAGAAGCGACGTGGTCTCTTGTGTCGCTTGAGAGGTTACTTGAGTTACACAAAAACAAGGAGACGATGAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

670

Amino Acids

76.43

Weight (kDa)

5.44

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	37 - 77	3.3e-12	G-patch domain
G-patch_2	PF12656	39 - 80	1.9e-06	G-patch domain
GCFC	PF07842	189 - 458	1.8e-66	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	1122
AccB7I	CCANNNNNTGG	2 cut(s)	409, 716
AccI	GTMKAC	1 cut(s)	1875
AciI	CCGC	6 cut(s)	110, 156, 302, 1169, 1421, 1626
AcoI	YGGCCR	1 cut(s)	1627
AcsI	RAATTY	6 cut(s)	217, 442, 451, 544, 1564, 1663
AcuI	CTGAAG	2 cut(s)	152, 722
AfaI	GTAC	1 cut(s)	1602
AfeI	AGCGCT	1 cut(s)	573
AfiI	CCNNNNNNNGG	6 cut(s)	207, 409, 716, 1009, 1133, 1847
AhdI	GACNNNNNGTC	1 cut(s)	730
AjiI	CACGTC	2 cut(s)	1762, 1947
AjnI	CCWGG	3 cut(s)	737, 1846, 1869
Alw26I	GTCTC	5 cut(s)	31, 642, 1041, 1956, 1991
Ama87I	CYCGRG	1 cut(s)	1126
Aor51HI	AGCGCT	1 cut(s)	573
AoxI	GGCC	7 cut(s)	94, 209, 399, 432, 832, 1627, 1838
ApeKI	GCWGC	9 cut(s)	253, 367, 898, 901, 1541, 1607, 1718, 1721, 1749
ApoI	RAATTY	6 cut(s)	217, 442, 451, 544, 1564, 1663
Asp700I	GAANNNNTTC	2 cut(s)	377, 1479
AspLEI	GCGC	2 cut(s)	574, 1816
AspS9I	GGNCC	2 cut(s)	400, 856
AsuC2I	CCSGG	1 cut(s)	1520
AsuHPI	GGTGA	6 cut(s)	55, 488, 602, 832, 1149, 1859
AsuII	TTCGAA	1 cut(s)	1912
AvaI	CYCGRG	1 cut(s)	1126
AvaII	GGWCC	1 cut(s)	856
BanI	GGYRCC	1 cut(s)	1122
BanII	GRGCYC	1 cut(s)	282
BbvCI	CCTCAGC	3 cut(s)	579, 852, 1809
BbvI	GCAGC	9 cut(s)	240, 379, 885, 888, 1528, 1619, 1730, 1733, 1761
BccI	CCATC	8 cut(s)	86, 403, 467, 1127, 1324, 1336, 1637, 1856
BceAI	ACGGC	4 cut(s)	34, 61, 419, 1894
BciT130I	CCWGG	3 cut(s)	739, 1848, 1871
BclI	TGATCA	3 cut(s)	1279, 1651, 1687
BcnI	CCSGG	1 cut(s)	1520
BcoDI	GTCTC	5 cut(s)	31, 642, 1041, 1956, 1991
BfaI	CTAG	3 cut(s)	1241, 1569, 1730
BfoI	RGCGCY	1 cut(s)	575
Bme1390I	CCNGG	4 cut(s)	739, 1520, 1848, 1871
Bme18I	GGWCC	1 cut(s)	856
BmeRI	GACNNNNNGTC	1 cut(s)	730
BmeT110I	CYCGRG	1 cut(s)	1126
BmgBI	CACGTC	2 cut(s)	1762, 1947
BmgT120I	GGNCC	2 cut(s)	400, 856
BmiI	GGNNCC	4 cut(s)	22, 279, 858, 1124
BmrFI	CCNGG	4 cut(s)	739, 1520, 1848, 1871
BmsI	GCATC	5 cut(s)	117, 480, 685, 1024, 1333
BoxI	GACNNNNGTC	1 cut(s)	1773
BpmI	CTGGAG	2 cut(s)	7, 1088
Bpu10I	CCTNAGC	4 cut(s)	462, 579, 852, 1809
Bpu14I	TTCGAA	1 cut(s)	1912
BpuEI	CTTGAG	4 cut(s)	1514, 1530, 1985, 1997
BpuMI	CCSGG	1 cut(s)	1520
BsaI	GGTCTC	1 cut(s)	1956
BsaJI	CCNNGG	7 cut(s)	16, 97, 549, 710, 1019, 1160, 1847
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 1061, 1091
Bsc4I	CCNNNNNNNGG	6 cut(s)	207, 409, 716, 1009, 1133, 1847
Bse1I	ACTGG	1 cut(s)	570
BseBI	CCWGG	3 cut(s)	739, 1848, 1871
BseDI	CCNNGG	7 cut(s)	16, 97, 549, 710, 1019, 1160, 1847
BseGI	GGATG	5 cut(s)	700, 831, 1015, 1648, 1771
BseLI	CCNNNNNNNGG	6 cut(s)	207, 409, 716, 1009, 1133, 1847
BseMII	CTCAG	5 cut(s)	476, 570, 807, 843, 1800
BseNI	ACTGG	1 cut(s)	570
BseRI	GAGGAG	3 cut(s)	596, 616, 1085
BseXI	GCAGC	9 cut(s)	240, 379, 885, 888, 1528, 1619, 1730, 1733, 1761
BshFI	GGCC	7 cut(s)	96, 211, 401, 434, 834, 1629, 1840
BshNI	GGYRCC	1 cut(s)	1122
BsiHKCI	CYCGRG	1 cut(s)	1126
BsiSI	CCGG	2 cut(s)	1519, 1623
BslI	CCNNNNNNNGG	6 cut(s)	207, 409, 716, 1009, 1133, 1847
BsmAI	GTCTC	5 cut(s)	31, 642, 1041, 1956, 1991
BsmBI	CGTCTC	1 cut(s)	1991
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	7 cut(s)	96, 211, 401, 434, 834, 1629, 1840
Bso31I	GGTCTC	1 cut(s)	1956
BsoBI	CYCGRG	1 cut(s)	1126
Bsp119I	TTCGAA	1 cut(s)	1912
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	510, 1279, 1651, 1687
Bsp19I	CCATGG	3 cut(s)	549, 710, 1019
BspACI	CCGC	6 cut(s)	110, 156, 302, 1169, 1421, 1626
BspANI	GGCC	7 cut(s)	96, 211, 401, 434, 834, 1629, 1840
BspCNI	CTCAG	5 cut(s)	475, 571, 808, 844, 1801
BspHI	TCATGA	3 cut(s)	919, 1296, 1654
BspLI	GGNNCC	4 cut(s)	22, 279, 858, 1124
BspT104I	TTCGAA	1 cut(s)	1912
BspT107I	GGYRCC	1 cut(s)	1122
BspTNI	GGTCTC	1 cut(s)	1956
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	7 cut(s)	16, 97, 549, 710, 1019, 1160, 1847
BssMI	GATC	4 cut(s)	510, 1279, 1651, 1687
BssNAI	GTATAC	1 cut(s)	1876
BssT1I	CCWWGG	4 cut(s)	97, 549, 710, 1019
Bst1107I	GTATAC	1 cut(s)	1876
Bst2UI	CCWGG	3 cut(s)	739, 1848, 1871
Bst4CI	ACNGT	4 cut(s)	969, 994, 1035, 1161
Bst6I	CTCTTC	2 cut(s)	408, 1706
BstBI	TTCGAA	1 cut(s)	1912
BstC8I	GCNNGC	3 cut(s)	576, 849, 1829
BstDEI	CTNAG	8 cut(s)	462, 579, 816, 852, 980, 1112, 1505, 1809
BstDSI	CCRYGG	5 cut(s)	16, 549, 710, 1019, 1160
BstEII	GGTNACC	1 cut(s)	1865
BstF5I	GGATG	5 cut(s)	700, 831, 1015, 1648, 1771
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	2 cut(s)	574, 1816
BstKTI	GATC	4 cut(s)	513, 1282, 1654, 1690
BstMAI	GTCTC	5 cut(s)	31, 642, 1041, 1956, 1991
BstMBI	GATC	4 cut(s)	510, 1279, 1651, 1687
BstMWI	GCNNNNNNNGC	8 cut(s)	162, 262, 1021, 1547, 1604, 1613, 1730, 1837
BstNI	CCWGG	3 cut(s)	739, 1848, 1871
BstPAI	GACNNNNGTC	1 cut(s)	1773
BstPI	GGTNACC	1 cut(s)	1865
BstSCI	CCNGG	4 cut(s)	737, 1518, 1846, 1869
BstV1I	GCAGC	9 cut(s)	240, 379, 885, 888, 1528, 1619, 1730, 1733, 1761
BstZ17I	GTATAC	1 cut(s)	1876
BsuRI	GGCC	7 cut(s)	96, 211, 401, 434, 834, 1629, 1840
BtgI	CCRYGG	5 cut(s)	16, 549, 710, 1019, 1160
BtgZI	GCGATG	1 cut(s)	105
BtrI	CACGTC	2 cut(s)	1762, 1947
BtsCI	GGATG	5 cut(s)	700, 831, 1015, 1648, 1771
BtsIMutI	CAGTG	3 cut(s)	520, 563, 609
Cac8I	GCNNGC	3 cut(s)	576, 849, 1829
CciI	TCATGA	3 cut(s)	919, 1296, 1654
CfoI	GCGC	2 cut(s)	574, 1816
Cfr13I	GGNCC	2 cut(s)	400, 856
CsiI	ACCWGGT	1 cut(s)	1869
Csp6I	GTAC	1 cut(s)	1601
CspCI	CAANNNNNGTGG	2 cut(s)	1743, 1778
CviQI	GTAC	1 cut(s)	1601
DdeI	CTNAG	8 cut(s)	462, 579, 816, 852, 980, 1112, 1505, 1809
DpnI	GATC	4 cut(s)	512, 1281, 1653, 1689
DpnII	GATC	4 cut(s)	510, 1279, 1651, 1687
DraI	TTTAAA	1 cut(s)	456
DrdI	GACNNNNNNGTC	1 cut(s)	50
DriI	GACNNNNNGTC	1 cut(s)	730
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	1627
Eam1104I	CTCTTC	2 cut(s)	408, 1706
Eam1105I	GACNNNNNGTC	1 cut(s)	730
EarI	CTCTTC	2 cut(s)	408, 1706
EciI	GGCGGA	1 cut(s)	291
Eco130I	CCWWGG	4 cut(s)	97, 549, 710, 1019
Eco147I	AGGCCT	1 cut(s)	1840
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	1956
Eco47I	GGWCC	1 cut(s)	856
Eco47III	AGCGCT	1 cut(s)	573
Eco57I	CTGAAG	2 cut(s)	152, 722
Eco88I	CYCGRG	1 cut(s)	1126
Eco91I	GGTNACC	1 cut(s)	1865
EcoO109I	RGGNCCY	1 cut(s)	856
EcoO65I	GGTNACC	1 cut(s)	1865
EcoRI	GAATTC	1 cut(s)	1564
EcoRII	CCWGG	3 cut(s)	737, 1846, 1869
EcoT14I	CCWWGG	4 cut(s)	97, 549, 710, 1019
EcoT22I	ATGCAT	2 cut(s)	1206, 1326
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	4 cut(s)	97, 549, 710, 1019
Esp3I	CGTCTC	1 cut(s)	1991
FalI	AAGNNNNNCTT	2 cut(s)	1340, 1372
FauI	CCCGC	1 cut(s)	103
FbaI	TGATCA	3 cut(s)	1279, 1651, 1687
FblI	GTMKAC	1 cut(s)	1875
FokI	GGATG	5 cut(s)	707, 838, 1002, 1655, 1778
FriOI	GRGCYC	1 cut(s)	282
FspBI	CTAG	3 cut(s)	1241, 1569, 1730
GlaI	GCGC	2 cut(s)	573, 1815
GsuI	CTGGAG	2 cut(s)	7, 1088
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	7 cut(s)	96, 211, 401, 434, 834, 1629, 1840
HapII	CCGG	2 cut(s)	1519, 1623
HhaI	GCGC	2 cut(s)	574, 1816
Hin6I	GCGC	2 cut(s)	572, 1814
HinP1I	GCGC	2 cut(s)	572, 1814
HindIII	AAGCTT	2 cut(s)	982, 1274
HinfI	GANTC	4 cut(s)	114, 706, 884, 1178
HpaII	CCGG	2 cut(s)	1519, 1623
HphI	GGTGA	6 cut(s)	55, 488, 602, 832, 1149, 1859
Hpy166II	GTNNAC	4 cut(s)	735, 1258, 1876, 1906
Hpy188III	TCNNGA	7 cut(s)	24, 464, 639, 920, 1297, 1360, 1655
Hpy8I	GTNNAC	4 cut(s)	735, 1258, 1876, 1906
Hpy99I	CGWCG	3 cut(s)	56, 440, 1948
HpyAV	CCTTC	5 cut(s)	367, 736, 886, 949, 1435
HpyCH4III	ACNGT	4 cut(s)	969, 994, 1035, 1161
HpyCH4IV	ACGT	4 cut(s)	51, 354, 1761, 1946
HpyCH4V	TGCA	8 cut(s)	265, 609, 659, 1015, 1204, 1324, 1381, 1696
HpyF10VI	GCNNNNNNNGC	8 cut(s)	162, 262, 1021, 1547, 1604, 1613, 1730, 1837
HpyF3I	CTNAG	8 cut(s)	462, 579, 816, 852, 980, 1112, 1505, 1809
HpySE526I	ACGT	4 cut(s)	51, 354, 1761, 1946
HspAI	GCGC	2 cut(s)	572, 1814
Ksp22I	TGATCA	3 cut(s)	1279, 1651, 1687
Kzo9I	GATC	4 cut(s)	510, 1279, 1651, 1687
LmnI	GCTCC	5 cut(s)	26, 277, 895, 1063, 1228
Lsp1109I	GCAGC	9 cut(s)	240, 379, 885, 888, 1528, 1619, 1730, 1733, 1761
LweI	GCATC	5 cut(s)	117, 480, 685, 1024, 1333
MabI	ACCWGGT	1 cut(s)	1869
MaeI	CTAG	3 cut(s)	1241, 1569, 1730
MaeII	ACGT	4 cut(s)	51, 354, 1761, 1946
MaeIII	GTNAC	6 cut(s)	590, 1155, 1865, 1886, 1971, 1980
MalI	GATC	4 cut(s)	512, 1281, 1653, 1689
MboI	GATC	4 cut(s)	510, 1279, 1651, 1687
MfeI	CAATTG	2 cut(s)	791, 1058
MhlI	GDGCHC	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	2 cut(s)	1206, 1418
Mph1103I	ATGCAT	2 cut(s)	1206, 1326
MroXI	GAANNNNTTC	2 cut(s)	377, 1479
MseI	TTAA	8 cut(s)	360, 455, 626, 630, 672, 798, 1265, 1287
MslI	CAYNNNNRTG	5 cut(s)	332, 1209, 1319, 1470, 1901
MspI	CCGG	2 cut(s)	1519, 1623
MspR9I	CCNGG	4 cut(s)	739, 1520, 1848, 1871
MunI	CAATTG	2 cut(s)	791, 1058
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	3 cut(s)	739, 1848, 1871
MwoI	GCNNNNNNNGC	8 cut(s)	162, 262, 1021, 1547, 1604, 1613, 1730, 1837
NciI	CCSGG	1 cut(s)	1520
NcoI	CCATGG	3 cut(s)	549, 710, 1019
NdeII	GATC	4 cut(s)	510, 1279, 1651, 1687
NlaIV	GGNNCC	4 cut(s)	22, 279, 858, 1124
NmuCI	GTSAC	3 cut(s)	590, 1155, 1865
NsiI	ATGCAT	2 cut(s)	1206, 1326
NspV	TTCGAA	1 cut(s)	1912
PacI	TTAATTAA	1 cut(s)	630
PagI	TCATGA	3 cut(s)	919, 1296, 1654
PceI	AGGCCT	1 cut(s)	1840
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	2 cut(s)	377, 1479
PfeI	GAWTC	3 cut(s)	114, 706, 1178
PflFI	GACNNNGTC	1 cut(s)	1948
PflMI	CCANNNNNTGG	2 cut(s)	409, 716
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
PpuMI	RGGWCCY	1 cut(s)	856
PshAI	GACNNNNGTC	1 cut(s)	1773
Psp5II	RGGWCCY	1 cut(s)	856
Psp6I	CCWGG	3 cut(s)	737, 1846, 1869
PspEI	GGTNACC	1 cut(s)	1865
PspGI	CCWGG	3 cut(s)	737, 1846, 1869
PspN4I	GGNNCC	4 cut(s)	22, 279, 858, 1124
PspPI	GGNCC	2 cut(s)	400, 856
PspPPI	RGGWCCY	1 cut(s)	856
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
PsyI	GACNNNGTC	1 cut(s)	1948
RsaI	GTAC	1 cut(s)	1602
RsaNI	GTAC	1 cut(s)	1601
RseI	CAYNNNNRTG	5 cut(s)	332, 1209, 1319, 1470, 1901
SaqAI	TTAA	8 cut(s)	360, 455, 626, 630, 672, 798, 1265, 1287
Sau3AI	GATC	4 cut(s)	510, 1279, 1651, 1687
Sau96I	GGNCC	2 cut(s)	400, 856
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	4 cut(s)	739, 1520, 1848, 1871
SduI	GDGCHC	1 cut(s)	282
SexAI	ACCWGGT	1 cut(s)	1869
SfaNI	GCATC	5 cut(s)	117, 480, 685, 1024, 1333
SfuI	TTCGAA	1 cut(s)	1912
SinI	GGWCC	1 cut(s)	856
SmiI	ATTTAAAT	1 cut(s)	456
SmiMI	CAYNNNNRTG	5 cut(s)	332, 1209, 1319, 1470, 1901
SmlI	CTYRAG	4 cut(s)	1493, 1545, 1964, 1976
SmoI	CTYRAG	4 cut(s)	1493, 1545, 1964, 1976
SseBI	AGGCCT	1 cut(s)	1840
SsiI	CCGC	6 cut(s)	110, 156, 302, 1169, 1421, 1626
SspMI	CTAG	3 cut(s)	1241, 1569, 1730
StuI	AGGCCT	1 cut(s)	1840
StyD4I	CCNGG	4 cut(s)	737, 1518, 1846, 1869
StyI	CCWWGG	4 cut(s)	97, 549, 710, 1019
SwaI	ATTTAAAT	1 cut(s)	456
TaaI	ACNGT	4 cut(s)	969, 994, 1035, 1161
TaiI	ACGT	4 cut(s)	54, 357, 1764, 1949
TaqI	TCGA	5 cut(s)	54, 438, 640, 723, 1912
TauI	GCSGC	1 cut(s)	1629
TfiI	GAWTC	3 cut(s)	114, 706, 1178
Tru1I	TTAA	8 cut(s)	360, 455, 626, 630, 672, 798, 1265, 1287
Tru9I	TTAA	8 cut(s)	360, 455, 626, 630, 672, 798, 1265, 1287
TscAI	CASTG	3 cut(s)	520, 570, 616
TseFI	GTSAC	3 cut(s)	590, 1155, 1865
TseI	GCWGC	9 cut(s)	253, 367, 898, 901, 1541, 1607, 1718, 1721, 1749
Tsp45I	GTSAC	3 cut(s)	590, 1155, 1865
TspDTI	ATGAA	8 cut(s)	137, 642, 743, 908, 1454, 1488, 1529, 1676
TspRI	CASTG	3 cut(s)	520, 570, 616
Tth111I	GACNNNGTC	1 cut(s)	1948
Van91I	CCANNNNNTGG	2 cut(s)	409, 716
VpaK11BI	GGWCC	1 cut(s)	856
XapI	RAATTY	6 cut(s)	217, 442, 451, 544, 1564, 1663
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1741
XmiI	GTMKAC	1 cut(s)	1875
XmnI	GAANNNNTTC	2 cut(s)	377, 1479
XspI	CTAG	3 cut(s)	1241, 1569, 1730
Zsp2I	ATGCAT	2 cut(s)	1206, 1326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.