Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Forward (+)

53631171 .. 53633549

Gene Structure 2379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G029540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2379 bp

ATGGAGAGGTTTGGAATGGAGAACGATTACGAGGACGGCCAATGGATCGACGGCGAGTTCTTCTACCGTAAGCGCAAGGAGAGACGCGTACAGTCCAAAGACGATGCCCTGTACGGCTACTCCGATGAAGAAGATGAAGAATATTCAGACGGATCCAGAAAACGCAGGAAGAAAGATCGCTACGTCGACTACACCAAGCCCATTAAATTTGTCTCCACTGAAAAGCTGGACAACAATTCCGATCAGAAGAAAACTGATCATGGCACTCCTGTCATTGGCTTTAACTCGACTGGCATGCGCGATGAAGCTGAAGATGATGATGGTGATGGTTTTCTGGCGACAGAGTTTGGGAGGAAGATAAAGGACGGAGCTGAGAGGAGACGTAAGAAGAAGGAAAAGCTGAAATTCAAGAATGAGATTCGAAAATGTGATGGAGATGAAGGAGGCATTGGGGATTTCGAGAAACACACCAAGGGCATAGGAAGGAAGATGTTTGAGAAGATGGGGTACACAGGAGGTGGACTCGGGAAGAATCAGCAAGGCATTGTGAGTCCTATTGAGGTAAAGTTGAGGCCGAAAAATATGGGCATGGGTTTCAATGACTACAAGGAAACAGAAACCAAGCTCCAGAATTTGCAAGAAGACAAACCTAACAAGCCTACAACCTTAAAACAGAAGCCTTCTTGGAAGAAGAAGAGGACTAGCAAGGAGCATTATCTCTCTGCCGAGGAGTTTATAGCCAAGAAGCAGGAAGAGAGTGATTCCAATCTTTTTGTTCACAATGTCATTGATATGCGCGGACCTCAAGTTCAAGTGTTGAGCAATTTGGACGATTTGAATGAGCGAGAGGAAGATAGAGAAGATGAAGGTGTTTTCATGCCGGAGCTACAGCACAATTTGAAGTTGGTTGTGGACTTGGCTGAGCTCGATATCATGAAACTTGATAGGGATTTAAGGTATGAGAGGGAGGCAGTAATTAGATTGAAGAATGAGAAAGAGAGGTTGGAGCTTGAGGAGGCGAGGCAGAAGCAACATTTGGATAGTATGGAGAGTATTCAGACTGTGTTGGACCAACTGGAGGAAGAGAAATCCATGGGAACATTGATGCTGGACTCGCTTGCAAATAGCTTTGGTGATCTCAAGAGACGGTTTGCAGATGAGCATAAGTTGTGTAAGTTGTCATGCATTGCTTGTTCCTTTGCTCTGCCTTTGTTTATGAGTACTATTCAAGGTTGGGATGCACTGCGGTATCCTTTGTATGGCTTGGATGTCGTGTCCTCCTGGAAGGCTTTGCTTCATGGAGAGGGAAATAAGTGTTCAACATCATCGCCTCATGCGCAGTTGGTTTTTGAGATTGTGAGGATTTCTGGTGCAGATAATTGGCAGGCCAAGGATCCTGAACCCATGCTTCGGTTTTTAGAGGCTTGGGAGAAGCTGCTGCCCCCTTGTGTCCTTAATGACATATTGGATCATTTAGTGTTGCCTAAGTTGAAGGATGCAGTTGGTGTTTGGGAACCATGCCGCGACACTCTTCCCATCCATGTATGGGTGCATCCATGGCTACCATTAATGGGTCACAGATTGGAGGAGTTGTATCCGACAATACGTTTCAAGTTGGGTAATGTTCTCAGTGCTTGGCACCCAAGCGACGCGTCTGCTTATGCCATACTCTCGCCGTGGAAGAATGTATTTGATTCTGCAAGTTGGAAACAACTTATGCATAGGTTCATAGTTCCCAAGTTGCAGCTTGTCCTAGAAGAGTTCCATGTGAACCCTGCAAACCAGAGTGTTGATCAGTTCAATTGGGTCATGAGGTGGGCTTATGTTATTCCCAGTCATATGATAGCCGATCTGATGGTGAAGTTTTTCTTCCCCAAATGGATAACCGTCTTGTTTTACTGGCTGAAATCAAACCCCAACTTTGAAGAGATTTTGCATTGGTACAAGGGTTGGAAAGAAGTCATTCCAGAGGAGCTTCAAGCAAATGAAAGCATCCGCCTTCAGCTCAATTGGGGTCTTGACATGATGAACCGGGCCGTTGAGGGTAGGGACTTAGTCGAACCTTGCCATGTGGAGCAAAGACAATCCGATTTTGAGGCACAGAAAAAAGCAGCAAACCAAGCAAACTCCAATGAGACAATGATGAGCTTGAGAGATGTGATTGAAGCCTTTGCGCAGCAGCACGGCTTGCTATTTAAGCCTAAACCCGAGAGGAGGCAAGACGGTCACCAGATATATGCATTTGGTTATGTAAACATCATAGTGGACTCTGTCAATCAAAAGGTGTATGCCCGGAAACCAAGAGAGGAAGCCTGGTCCCTCGTAGACCTTGCAACATTGCTTGACATGCACAATAACTCTCTTGCAAGGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

792

Amino Acids

92.37

Weight (kDa)

6.01

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP_N	PF12457	1 - 88	1.1e-14	Tuftelin interacting protein N terminal
G-patch	PF01585	157 - 198	5.9e-13	G-patch domain
GCFC	PF07842	370 - 631	1.1e-81	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1338, 2175
AccB1I	GGYRCC	1 cut(s)	1638
AccI	GTMKAC	2 cut(s)	186, 2325
AccII	CGCG	5 cut(s)	87, 300, 798, 1524, 1652
AciI	CCGC	4 cut(s)	798, 1246, 1522, 1996
AclWI	GGATC	6 cut(s)	53, 147, 160, 1388, 1401, 1476
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	206, 404, 631
AcuI	CTGAAG	2 cut(s)	330, 1985
AfaI	GTAC	5 cut(s)	90, 113, 509, 1222, 1943
AfiI	CCNNNNNNNGG	7 cut(s)	275, 1078, 1259, 1410, 1546, 1571, 2214
AflIII	ACRYGT	2 cut(s)	85, 1650
AjnI	CCWGG	2 cut(s)	1280, 2312
AjuI	GAANNNNNNNTTGG	6 cut(s)	432, 464, 986, 1018, 1019, 1051
AloI	GAACNNNNNNTCC	2 cut(s)	792, 824
Alw21I	GWGCWC	1 cut(s)	927
Alw26I	GTCTC	5 cut(s)	76, 217, 373, 1138, 2129
AlwI	GGATC	6 cut(s)	53, 147, 160, 1388, 1401, 1476
Ama87I	CYCGRG	2 cut(s)	524, 2207
AoxI	GGCC	4 cut(s)	37, 572, 1386, 2034
ApeKI	GCWGC	6 cut(s)	1435, 1438, 1744, 2111, 2176, 2179
ApoI	RAATTY	3 cut(s)	206, 404, 631
AseI	ATTAAT	1 cut(s)	1568
Asp700I	GAANNNNTTC	2 cut(s)	1865, 1962
AspLEI	GCGC	5 cut(s)	75, 300, 798, 1339, 2176
AspS9I	GGNCC	4 cut(s)	800, 1069, 2034, 2316
AsuC2I	CCSGG	2 cut(s)	2033, 2293
AsuHPI	GGTGA	4 cut(s)	335, 1145, 1870, 2219
AsuII	TTCGAA	1 cut(s)	421
AvaI	CYCGRG	2 cut(s)	524, 2207
AvaII	GGWCC	3 cut(s)	800, 1069, 2316
BaeI	ACNNNNGTAYC	4 cut(s)	1232, 1265, 1933, 1966
BamHI	GGATCC	2 cut(s)	152, 1393
BanI	GGYRCC	1 cut(s)	1638
BanII	GRGCYC	1 cut(s)	927
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	927
BbvI	GCAGC	6 cut(s)	1422, 1425, 1756, 2123, 2188, 2191
BccI	CCATC	6 cut(s)	314, 320, 425, 496, 1544, 1849
BceAI	ACGGC	6 cut(s)	52, 67, 130, 1660, 2021, 2200
BcgI	CGANNNNNNTGC	4 cut(s)	277, 311, 1637, 1671
BciT130I	CCWGG	2 cut(s)	1282, 2314
BciVI	GTATCC	2 cut(s)	1260, 1605
BclI	TGATCA	2 cut(s)	256, 1792
BcnI	CCSGG	2 cut(s)	2033, 2293
BcoDI	GTCTC	5 cut(s)	76, 217, 373, 1138, 2129
BfaI	CTAG	2 cut(s)	702, 1754
BfmI	CTRYAG	1 cut(s)	887
BfuI	GTATCC	2 cut(s)	1260, 1605
BisI	GCNGC	7 cut(s)	1436, 1439, 1522, 1745, 2112, 2177, 2180
BlpI	GCTNAGC	1 cut(s)	921
BlsI	GCNGC	7 cut(s)	1437, 1440, 1523, 1746, 2113, 2178, 2181
BmcAI	AGTACT	1 cut(s)	1222
Bme1390I	CCNGG	4 cut(s)	1282, 2033, 2293, 2314
Bme18I	GGWCC	3 cut(s)	800, 1069, 2316
BmeT110I	CYCGRG	2 cut(s)	524, 2207
BmgT120I	GGNCC	4 cut(s)	800, 1069, 2034, 2316
BmiI	GGNNCC	5 cut(s)	154, 1395, 1515, 1640, 2318
BmrFI	CCNGG	4 cut(s)	1282, 2033, 2293, 2314
BmrI	ACTGGG	1 cut(s)	1827
BmsI	GCATC	6 cut(s)	94, 1095, 1228, 1486, 1561, 2001
BmuI	ACTGGG	1 cut(s)	1827
BpiI	GAAGAC	1 cut(s)	648
BplI	GAGNNNNNCTC	2 cut(s)	507, 539
BpmI	CTGGAG	2 cut(s)	611, 1097
Bpu1102I	GCTNAGC	1 cut(s)	921
Bpu14I	TTCGAA	1 cut(s)	421
BpuEI	CTTGAG	4 cut(s)	789, 1031, 1124, 2170
BpuMI	CCSGG	2 cut(s)	2033, 2293
BsaBI	GATNNNNATC	1 cut(s)	765
BsaJI	CCNNGG	6 cut(s)	471, 726, 1092, 1389, 1556, 1676
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 1577, 1607
Bsc4I	CCNNNNNNNGG	7 cut(s)	275, 1078, 1259, 1410, 1546, 1571, 2214
Bse1I	ACTGG	4 cut(s)	295, 1080, 1833, 1904
Bse3DI	GCAATG	2 cut(s)	1185, 2336
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	2 cut(s)	1282, 2314
BseDI	CCNNGG	6 cut(s)	471, 726, 1092, 1389, 1556, 1676
BseGI	GGATG	6 cut(s)	1243, 1273, 1501, 1536, 1552, 1992
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	7 cut(s)	275, 1078, 1259, 1410, 1546, 1571, 2214
BseMI	GCAATG	2 cut(s)	1185, 2336
BseMII	CTCAG	3 cut(s)	363, 912, 1642
BseNI	ACTGG	4 cut(s)	295, 1080, 1833, 1904
BseRI	GAGGAG	6 cut(s)	391, 743, 1028, 1601, 1985, 2227
BseXI	GCAGC	6 cut(s)	1422, 1425, 1756, 2123, 2188, 2191
BsgI	GTGCAG	1 cut(s)	1392
Bsh1236I	CGCG	5 cut(s)	87, 300, 798, 1524, 1652
BshFI	GGCC	4 cut(s)	39, 574, 1388, 2036
BshNI	GGYRCC	1 cut(s)	1638
BsiHKAI	GWGCWC	1 cut(s)	927
BsiHKCI	CYCGRG	2 cut(s)	524, 2207
BsiSI	CCGG	3 cut(s)	881, 2032, 2293
BslFI	GGGAC	2 cut(s)	2063, 2302
BslI	CCNNNNNNNGG	7 cut(s)	275, 1078, 1259, 1410, 1546, 1571, 2214
BsmAI	GTCTC	5 cut(s)	76, 217, 373, 1138, 2129
BsmBI	CGTCTC	3 cut(s)	76, 373, 1138
BsmFI	GGGAC	2 cut(s)	2063, 2302
BsnI	GGCC	4 cut(s)	39, 574, 1388, 2036
BsoBI	CYCGRG	2 cut(s)	524, 2207
Bsp119I	TTCGAA	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp1720I	GCTNAGC	1 cut(s)	921
Bsp19I	CCATGG	2 cut(s)	1092, 1556
BspACI	CCGC	4 cut(s)	798, 1246, 1522, 1996
BspANI	GGCC	4 cut(s)	39, 574, 1388, 2036
BspCNI	CTCAG	3 cut(s)	364, 913, 1641
BspFNI	CGCG	5 cut(s)	87, 300, 798, 1524, 1652
BspHI	TCATGA	2 cut(s)	933, 1809
BspLI	GGNNCC	5 cut(s)	154, 1395, 1515, 1640, 2318
BspPI	GGATC	6 cut(s)	53, 147, 160, 1388, 1401, 1476
BspT104I	TTCGAA	1 cut(s)	421
BspT107I	GGYRCC	1 cut(s)	1638
BsrDI	GCAATG	2 cut(s)	1185, 2336
BsrI	ACTGG	4 cut(s)	295, 1080, 1833, 1904
BssECI	CCNNGG	6 cut(s)	471, 726, 1092, 1389, 1556, 1676
BssT1I	CCWWGG	4 cut(s)	471, 1092, 1389, 1556
Bst2UI	CCWGG	2 cut(s)	1282, 2314
Bst4CI	ACNGT	6 cut(s)	68, 93, 1063, 1149, 1888, 2225
Bst6I	CTCTTC	6 cut(s)	689, 747, 1077, 1536, 1752, 1920
BstAPI	GCANNNNNTGC	1 cut(s)	2188
BstBI	TTCGAA	1 cut(s)	421
BstC8I	GCNNGC	4 cut(s)	296, 1119, 1386, 2189
BstDEI	CTNAG	5 cut(s)	372, 921, 1485, 1628, 2053
BstDSI	CCRYGG	3 cut(s)	1092, 1556, 1676
BstEII	GGTNACC	1 cut(s)	2225
BstF5I	GGATG	6 cut(s)	1243, 1273, 1501, 1536, 1552, 1992
BstFNI	CGCG	5 cut(s)	87, 300, 798, 1524, 1652
BstHHI	GCGC	5 cut(s)	75, 300, 798, 1339, 2176
BstMAI	GTCTC	5 cut(s)	76, 217, 373, 1138, 2129
BstMWI	GCNNNNNNNGC	7 cut(s)	1114, 1336, 1558, 2120, 2188, 2197, 2347
BstNI	CCWGG	2 cut(s)	1282, 2314
BstNSI	RCATGY	2 cut(s)	298, 2350
BstPI	GGTNACC	1 cut(s)	2225
BstSCI	CCNGG	4 cut(s)	1280, 2031, 2291, 2312
BstSFI	CTRYAG	1 cut(s)	887
BstUI	CGCG	5 cut(s)	87, 300, 798, 1524, 1652
BstV1I	GCAGC	6 cut(s)	1422, 1425, 1756, 2123, 2188, 2191
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	2 cut(s)	152, 1393
BstYI	RGATCY	2 cut(s)	152, 1393
BsuI	GTATCC	2 cut(s)	1260, 1605
BsuRI	GGCC	4 cut(s)	39, 574, 1388, 2036
BtgI	CCRYGG	3 cut(s)	1092, 1556, 1676
BtgZI	GCGATG	2 cut(s)	315, 1311
BtsCI	GGATG	6 cut(s)	1243, 1273, 1501, 1536, 1552, 1992
BtsI	GCAGTG	1 cut(s)	1241
BtsIMutI	CAGTG	3 cut(s)	216, 1241, 1636
Cac8I	GCNNGC	4 cut(s)	296, 1119, 1386, 2189
CciI	TCATGA	2 cut(s)	933, 1809
CfoI	GCGC	5 cut(s)	75, 300, 798, 1339, 2176
Cfr13I	GGNCC	4 cut(s)	800, 1069, 2034, 2316
CseI	GACGC	3 cut(s)	93, 1641, 1658
Csp6I	GTAC	5 cut(s)	89, 112, 508, 1221, 1942
CviQI	GTAC	5 cut(s)	89, 112, 508, 1221, 1942
DdeI	CTNAG	5 cut(s)	372, 921, 1485, 1628, 2053
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	6 cut(s)	689, 747, 1077, 1536, 1752, 1920
EarI	CTCTTC	6 cut(s)	689, 747, 1077, 1536, 1752, 1920
EciI	GGCGGA	1 cut(s)	1985
Ecl136II	GAGCTC	1 cut(s)	925
Eco130I	CCWWGG	4 cut(s)	471, 1092, 1389, 1556
Eco24I	GRGCYC	1 cut(s)	927
Eco32I	GATATC	1 cut(s)	931
Eco47I	GGWCC	3 cut(s)	800, 1069, 2316
Eco53kI	GAGCTC	1 cut(s)	925
Eco57I	CTGAAG	2 cut(s)	330, 1985
Eco88I	CYCGRG	2 cut(s)	524, 2207
Eco91I	GGTNACC	1 cut(s)	2225
EcoICRI	GAGCTC	1 cut(s)	925
EcoO65I	GGTNACC	1 cut(s)	2225
EcoRII	CCWGG	2 cut(s)	1280, 2312
EcoRV	GATATC	1 cut(s)	931
EcoT14I	CCWWGG	4 cut(s)	471, 1092, 1389, 1556
EcoT22I	ATGCAT	3 cut(s)	1187, 1722, 2242
EcoT38I	GRGCYC	1 cut(s)	927
ErhI	CCWWGG	4 cut(s)	471, 1092, 1389, 1556
Esp3I	CGTCTC	3 cut(s)	76, 373, 1138
FalI	AAGNNNNNCTT	2 cut(s)	1853, 1885
FaqI	GGGAC	2 cut(s)	2063, 2302
FauNDI	CATATG	1 cut(s)	1839
FbaI	TGATCA	2 cut(s)	256, 1792
FblI	GTMKAC	2 cut(s)	186, 2325
Fnu4HI	GCNGC	7 cut(s)	1436, 1439, 1522, 1745, 2112, 2177, 2180
FokI	GGATG	6 cut(s)	1250, 1280, 1508, 1523, 1539, 1979
FriOI	GRGCYC	1 cut(s)	927
Fsp4HI	GCNGC	7 cut(s)	1436, 1439, 1522, 1745, 2112, 2177, 2180
FspBI	CTAG	2 cut(s)	702, 1754
FspI	TGCGCA	2 cut(s)	1338, 2175
GlaI	GCGC	5 cut(s)	74, 299, 797, 1338, 2175
GluI	GCNGC	7 cut(s)	1436, 1439, 1522, 1745, 2112, 2177, 2180
GsuI	CTGGAG	2 cut(s)	611, 1097
HaeIII	GGCC	4 cut(s)	39, 574, 1388, 2036
HapII	CCGG	3 cut(s)	881, 2032, 2293
HgaI	GACGC	3 cut(s)	93, 1641, 1658
HhaI	GCGC	5 cut(s)	75, 300, 798, 1339, 2176
Hin6I	GCGC	5 cut(s)	73, 298, 796, 1337, 2174
HinP1I	GCGC	5 cut(s)	73, 298, 796, 1337, 2174
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	8 cut(s)	418, 522, 532, 550, 761, 1112, 1694, 2267
HpaII	CCGG	3 cut(s)	881, 2032, 2293
HphI	GGTGA	4 cut(s)	335, 1145, 1870, 2219
Hpy166II	GTNNAC	9 cut(s)	187, 510, 521, 778, 913, 1771, 2254, 2266, 2326
Hpy188I	TCNGA	8 cut(s)	124, 148, 241, 246, 1059, 1599, 1854, 2089
Hpy8I	GTNNAC	9 cut(s)	187, 510, 521, 778, 913, 1771, 2254, 2266, 2326
Hpy99I	CGWCG	3 cut(s)	53, 188, 1652
HpyAV	CCTTC	8 cut(s)	385, 434, 477, 690, 860, 1279, 1486, 2009
HpyCH4III	ACNGT	6 cut(s)	68, 93, 1063, 1149, 1888, 2225
HpyCH4IV	ACGT	3 cut(s)	183, 382, 1606
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1114, 1336, 1558, 2120, 2188, 2197, 2347
HpyF3I	CTNAG	5 cut(s)	372, 921, 1485, 1628, 2053
HpySE526I	ACGT	3 cut(s)	183, 382, 1606
HspAI	GCGC	5 cut(s)	73, 298, 796, 1337, 2174
Ksp22I	TGATCA	2 cut(s)	256, 1792
LmnI	GCTCC	7 cut(s)	368, 630, 709, 883, 1006, 1972, 2074
Lsp1109I	GCAGC	6 cut(s)	1422, 1425, 1756, 2123, 2188, 2191
LweI	GCATC	6 cut(s)	94, 1095, 1228, 1486, 1561, 2001
MaeI	CTAG	2 cut(s)	702, 1754
MaeII	ACGT	3 cut(s)	183, 382, 1606
MaeIII	GTNAC	2 cut(s)	1574, 2225
MfeI	CAATTG	2 cut(s)	1801, 2008
MflI	RGATCY	2 cut(s)	152, 1393
MhlI	GDGCHC	1 cut(s)	927
MluI	ACGCGT	2 cut(s)	85, 1650
MlyI	GAGTC	4 cut(s)	516, 559, 1106, 2261
MmeI	TCCRAC	5 cut(s)	984, 1047, 1622, 1685, 1931
Mph1103I	ATGCAT	3 cut(s)	1187, 1722, 2242
MroXI	GAANNNNTTC	2 cut(s)	1865, 1962
MseI	TTAA	7 cut(s)	204, 282, 668, 953, 1455, 1568, 2196
MslI	CAYNNNNRTG	2 cut(s)	791, 2261
MspI	CCGG	3 cut(s)	881, 2032, 2293
MspR9I	CCNGG	4 cut(s)	1282, 2033, 2293, 2314
MunI	CAATTG	2 cut(s)	1801, 2008
MvaI	CCWGG	2 cut(s)	1282, 2314
MvnI	CGCG	5 cut(s)	87, 300, 798, 1524, 1652
MwoI	GCNNNNNNNGC	7 cut(s)	1114, 1336, 1558, 2120, 2188, 2197, 2347
NciI	CCSGG	2 cut(s)	2033, 2293
NcoI	CCATGG	2 cut(s)	1092, 1556
NdeI	CATATG	1 cut(s)	1839
NlaIV	GGNNCC	5 cut(s)	154, 1395, 1515, 1640, 2318
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	2 cut(s)	1574, 2225
NsbI	TGCGCA	2 cut(s)	1338, 2175
NsiI	ATGCAT	3 cut(s)	1187, 1722, 2242
NspI	RCATGY	2 cut(s)	298, 2350
NspV	TTCGAA	1 cut(s)	421
PaeI	GCATGC	1 cut(s)	298
PagI	TCATGA	2 cut(s)	933, 1809
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdmI	GAANNNNTTC	2 cut(s)	1865, 1962
PfeI	GAWTC	4 cut(s)	418, 532, 761, 1694
PflFI	GACNNNGTC	2 cut(s)	2054, 2270
PfoI	TCCNGGA	1 cut(s)	1280
PkrI	GCNGC	7 cut(s)	1437, 1440, 1523, 1746, 2113, 2178, 2181
PleI	GAGTC	4 cut(s)	516, 558, 1106, 2261
PpsI	GAGTC	4 cut(s)	516, 558, 1106, 2261
PshBI	ATTAAT	1 cut(s)	1568
Psp124BI	GAGCTC	1 cut(s)	927
Psp6I	CCWGG	2 cut(s)	1280, 2312
PspEI	GGTNACC	1 cut(s)	2225
PspGI	CCWGG	2 cut(s)	1280, 2312
PspN4I	GGNNCC	5 cut(s)	154, 1395, 1515, 1640, 2318
PspPI	GGNCC	4 cut(s)	800, 1069, 2034, 2316
PsuI	RGATCY	2 cut(s)	152, 1393
PsyI	GACNNNGTC	2 cut(s)	2054, 2270
RsaI	GTAC	5 cut(s)	90, 113, 509, 1222, 1943
RsaNI	GTAC	5 cut(s)	89, 112, 508, 1221, 1942
RseI	CAYNNNNRTG	2 cut(s)	791, 2261
SacI	GAGCTC	1 cut(s)	927
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	7 cut(s)	204, 282, 668, 953, 1455, 1568, 2196
SatI	GCNGC	7 cut(s)	1436, 1439, 1522, 1745, 2112, 2177, 2180
Sau96I	GGNCC	4 cut(s)	800, 1069, 2034, 2316
ScaI	AGTACT	1 cut(s)	1222
SchI	GAGTC	4 cut(s)	516, 559, 1106, 2261
ScrFI	CCNGG	4 cut(s)	1282, 2033, 2293, 2314
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	6 cut(s)	94, 1095, 1228, 1486, 1561, 2001
SfcI	CTRYAG	1 cut(s)	887
SfuI	TTCGAA	1 cut(s)	421
SinI	GGWCC	3 cut(s)	800, 1069, 2316
SmiMI	CAYNNNNRTG	2 cut(s)	791, 2261
SmlI	CTYRAG	4 cut(s)	804, 1010, 1139, 2149
SmoI	CTYRAG	4 cut(s)	804, 1010, 1139, 2149
SphI	GCATGC	1 cut(s)	298
SsiI	CCGC	4 cut(s)	798, 1246, 1522, 1996
SspI	AATATT	1 cut(s)	143
SspMI	CTAG	2 cut(s)	702, 1754
SstI	GAGCTC	1 cut(s)	927
StyD4I	CCNGG	4 cut(s)	1280, 2031, 2291, 2312
StyI	CCWWGG	4 cut(s)	471, 1092, 1389, 1556
TaaI	ACNGT	6 cut(s)	68, 93, 1063, 1149, 1888, 2225
TaiI	ACGT	3 cut(s)	186, 385, 1609
TaqI	TCGA	7 cut(s)	48, 186, 287, 421, 459, 927, 2058
TatI	WGTACW	1 cut(s)	1220
TauI	GCSGC	1 cut(s)	1524
TfiI	GAWTC	4 cut(s)	418, 532, 761, 1694
Tru1I	TTAA	7 cut(s)	204, 282, 668, 953, 1455, 1568, 2196
Tru9I	TTAA	7 cut(s)	204, 282, 668, 953, 1455, 1568, 2196
TscAI	CASTG	3 cut(s)	223, 1248, 1636
TseFI	GTSAC	2 cut(s)	1574, 2225
TseI	GCWGC	6 cut(s)	1435, 1438, 1744, 2111, 2176, 2179
Tsp45I	GTSAC	2 cut(s)	1574, 2225
TspGWI	ACGGA	2 cut(s)	165, 381
TspRI	CASTG	3 cut(s)	223, 1248, 1636
Tth111I	GACNNNGTC	2 cut(s)	2054, 2270
VpaK11BI	GGWCC	3 cut(s)	800, 1069, 2316
VspI	ATTAAT	1 cut(s)	1568
XapI	RAATTY	3 cut(s)	206, 404, 631
XceI	RCATGY	2 cut(s)	298, 2350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XmiI	GTMKAC	2 cut(s)	186, 2325
XmnI	GAANNNNTTC	2 cut(s)	1865, 1962
XspI	CTAG	2 cut(s)	702, 1754
ZrmI	AGTACT	1 cut(s)	1222
Zsp2I	ATGCAT	3 cut(s)	1187, 1722, 2242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.