Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Forward (+)

37423176 .. 37429560

Gene Structure 6385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG335800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2649 bp

ATGGATGATTATCAGGAGATGGAGAGGTTCGGAATGGAGAACGATTACGAGGACCTCCAGTGGATCGGTGGCGAGGCCTATTACCGAAACCGCAAGAGTAAGCGCGTGCAGACCAAAGACGATGCTCTCTACGGCTCGTTCGCTGATTCCGATGACGATGAAGACGACGGCTCCAGGAAACGCCGCAAAGAGCGAAAGGCCGACTTCACAAAGCCCGTCAGTTTTGTCTCCACCGGCGTCGTCGTCCCCAACCAGGAAGCCGAGAACGATTTAAAGCAGCAGAGCGATGATGGTAGGCCTGATATTGATCCTGCTGCGACTTCAGGTTCTGGTCTAGGCTTCAATAATTCTGGTCTAGGGTTCAATAATTCTGGTTTAGGATTTGGTAATTCTAGTGGTTTAGGATTCGGTAATACTGGTGGTTTAGGATTCAATCATTCAGTAGGCAATGATGATGAGGAAGATGACAGCAGTTTTCTGCCGTCGGCCTTCGGGAAGAAGATAAAGGAGGGAGCTGAGAGGAGACACAAGGAGAAAGAAAAGATGAAATTGCAGCAGCAGAGTAGTCGGTCTCGAAGAGATTTGGAATCTAAAGGAGCAATCAGCGGCGGGGATGGGGATTTGGGGGCTTTTGAGAAACACACAAAAGGCATTGGGATGAAGATGCTTGCAAAAATGGGATACAAAGGAGGTGGTCTTGGGAAGAACCAGCAAGGAATTCTTGCCCCCATTGAAGCCAAGTTGAGGCCAAAAAACATGGGTATGGGTTTTAATGATTACAAGGAAACCAAACAGCCCAGTGTGCAAGAATTGGATGAGGAAAAGCCCAAGAAGCAGTTGCCGGCTGCTACTGCCACCACCAAAAAGAGGAATTCCTGGAAGAAGATGGTTGCTGGCAGGACTAACAAGGAGCGGTATATATCTGCCAAGGAGTTGTTAGCCAAGAAAGAAGAAGAAGGTGCCGAGGTCTTTGTGCAGAAGGTGGTTGATATGCGGGGACCTCAAGTACGAGTTTTGACCAATTTGGAGAATTTGAATGCTGAGGAGAAGGCTAGGGAAGAAAATGTTCCCATGCCTGAGCTACAGCACAACTTGAGGTTGATTCTTGACATGGCTGAGCTTGACATCCAAAAGATTGATAGGGATTTGAGGAATGAGAGAGAGACTGCTATAAGCTTGAACCAGGAGAAAGAGAGATTGGAAGCTGAGGTGACTTTGCAGAAGCAGCACTTGGATAGCTTGGATGATATCACAACTGTGTTGGACCGACTGGGAGAAGAGAAAGCCATGGGAATATTGACACTGGATTCTCTGGCAAAGAGTTTCAGTGACCTGCAGAGGAGGTATGCCGATGACTACAAGTTATGTAACTTGGCTTGCATTGCCTGTTCCTTTGCACTCCCTTTGTTTATCAGGATGTTTCAAGGTTGGGATCCTCTTCGGAACCCCTCTCATGGAATGGACGTGGTATCCACCTGGAAGGCTTTGCTTCATGGGGAGGGGGAGTATGAGCGGTGCCTTGATATATGGGATTCTTCAATGTCTCCTTATACCCAATTGGTTTCCGAGGTTGTGGTACCAGCTGTGAGGATTGCTGGAGTAAATACTTGGCAACCTAAGGACCCTGAACCCATGCTTCGTTTTTTGGAGTCTTGGGAGAAATTGCTGCCGGCTCCTGTTCTTAATAGCATAGTGGATATGGTAGTCTTCCCCAAATTGAAGGAGGCAGTCGACTTTTGGGAACCTCACCGGGACACAGTTCCCATCCATGTCTGGGTGCATCCATGGCTACCACTATTAGGACACAAGTTGGAGGAGGTGTACCACACAATACGCTACAAGTTGAGTAATGTTCTAGGTGCATGGCACCCCAGTGATGGATCTGCTTATACGATACTCTCTCCTTGGAAAAAGGTTTTCGATTCTGCAAGTTGGGAACAGCTAATGCATCGATTTATAGTACCCAAATTGCAGCTTGTTTTGCAAGACTTCCAAGTAAACCCTGCAGATCAGAGACTTGATCAGTTTAATTGGGTCATGAGTTGGGCTTCTGCTATTCCAATTCATTTAATGGTAGATATGTTGGAGAAGTTTTTCTTCCCCAAGTGGCTACATGTTTTATATCACTGGTTAATATCAAACCCGAACTTTGAAGAGGTTTTGAATTGGTATAAAGGTTGGAAGGAACTTATATCTGAAGAGCTTCACGCAAATGAAAGTATCCGCTATCAGCTTAATTGTGGCCTTGACATGATGAATCGTGCTGTTGAGGGTATGGAGGTGGTTCAACCTGGTTTGAAAGAGAATATTAGCTACCTCAGGGTGCTTGAACAAAGGCAATTTGAGGCACAGCAAAAGGCAGCAGCGGCCCATGCAAATTTGGGTGGCGCAGCCCATATTGATGGTGGTGGTCACGAGATGACCCTGAAAGATGTTATTGAAGCCCATGCACAGCAGAATGGGTTGCTATTTAGGCCTAAGCCTACTAGGACGCATAATGGCCACCAGATATACGGGTTTGGTAATGTAAGCATAATAGTTGACTCTCTAAATCAAAAGGTGTATGCCCAAACAGAGGACACTTGGTCCCTTGTATCCCTTGAGAAGTTGCTTGACCTGCACAATACTTCTCTTACAAGAAGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

882

Amino Acids

100.2

Weight (kDa)

5.8

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP_N	PF12457	2 - 96	7.6e-21	Tuftelin interacting protein N terminal
G-patch	PF01585	215 - 256	1.5e-14	G-patch domain
GCFC	PF07842	435 - 707	2.5e-91	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1341, 2625
Acc65I	GGTACC	1 cut(s)	1576
AccB1I	GGYRCC	4 cut(s)	959, 1515, 1576, 1866
AccBSI	CCGCTC	2 cut(s)	913, 1513
AccI	GTMKAC	1 cut(s)	1731
AccII	CGCG	1 cut(s)	105
AciI	CCGC	9 cut(s)	91, 184, 606, 609, 913, 994, 1513, 2224, 2366
AclWI	GGATC	5 cut(s)	71, 302, 1427, 1440, 1888
AcoI	YGGCCR	1 cut(s)	2500
AcsI	RAATTY	4 cut(s)	717, 871, 1030, 2377
AcuI	CTGAAG	2 cut(s)	306, 2217
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	4 cut(s)	1008, 1578, 1823, 1962
AfiI	CCNNNNNNNGG	8 cut(s)	253, 744, 867, 1454, 1774, 1799, 1877, 2575
AflIII	ACRYGT	1 cut(s)	2113
AhdI	GACNNNNNGTC	1 cut(s)	2584
AjiI	CACGTC	1 cut(s)	1465
AjnI	CCWGG	6 cut(s)	173, 252, 875, 1182, 1475, 2290
AjuI	GAANNNNNNNTTGG	4 cut(s)	1181, 1213, 1214, 1246
AleI	CACNNNNGTG	2 cut(s)	1256, 1872
Alw26I	GTCTC	6 cut(s)	232, 517, 576, 1157, 1548, 2008
AlwI	GGATC	5 cut(s)	71, 302, 1427, 1440, 1888
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	9 cut(s)	75, 198, 296, 486, 746, 2242, 2367, 2474, 2500
ApoI	RAATTY	4 cut(s)	717, 871, 1030, 2377
Asp700I	GAANNNNTTC	3 cut(s)	1065, 2093, 2202
Asp718I	GGTACC	1 cut(s)	1576
AspLEI	GCGC	2 cut(s)	105, 2390
AspS9I	GGNCC	6 cut(s)	52, 998, 1264, 1621, 2368, 2586
AsuC2I	CCSGG	1 cut(s)	1751
AsuHPI	GGTGA	2 cut(s)	1222, 1739
AvaII	GGWCC	5 cut(s)	52, 998, 1264, 1621, 2586
AxyI	CCTNAGG	2 cut(s)	1617, 2318
BalI	TGGCCA	1 cut(s)	2502
BamHI	GGATCC	1 cut(s)	1432
BanI	GGYRCC	4 cut(s)	959, 1515, 1576, 1866
BauI	CACGAG	1 cut(s)	2414
BbsI	GAAGAC	2 cut(s)	168, 1699
BbvCI	CCTCAGC	2 cut(s)	1041, 1206
BccI	CCATC	7 cut(s)	13, 284, 608, 880, 1772, 1871, 2396
BceAI	ACGGC	3 cut(s)	148, 184, 466
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	6 cut(s)	175, 254, 877, 1184, 1477, 2292
BciVI	GTATCC	4 cut(s)	674, 1480, 2231, 2605
BclI	TGATCA	1 cut(s)	2020
BcnI	CCSGG	1 cut(s)	1751
BcoDI	GTCTC	6 cut(s)	232, 517, 576, 1157, 1548, 2008
BfaI	CTAG	6 cut(s)	335, 356, 393, 1053, 1856, 2487
BfmI	CTRYAG	3 cut(s)	1082, 1334, 2004
BfuAI	ACCTGC	2 cut(s)	1341, 2625
BfuI	GTATCC	4 cut(s)	674, 1480, 2231, 2605
BlpI	GCTNAGC	1 cut(s)	1116
Bme1390I	CCNGG	7 cut(s)	175, 254, 877, 1184, 1477, 1751, 2292
Bme18I	GGWCC	5 cut(s)	52, 998, 1264, 1621, 2586
BmeRI	GACNNNNNGTC	1 cut(s)	2584
BmgBI	CACGTC	1 cut(s)	1465
BmgT120I	GGNCC	6 cut(s)	52, 998, 1264, 1621, 2368, 2586
BmrFI	CCNGG	7 cut(s)	175, 254, 877, 1184, 1477, 1751, 2292
BmrI	ACTGGG	3 cut(s)	792, 1280, 1866
BmsI	GCATC	4 cut(s)	112, 654, 1789, 1957
BmuI	ACTGGG	3 cut(s)	792, 1280, 1866
BpiI	GAAGAC	2 cut(s)	168, 1699
BpmI	CTGGAG	3 cut(s)	41, 157, 1617
Bpu10I	CCTNAGC	4 cut(s)	1041, 1077, 1206, 2478
Bpu1102I	GCTNAGC	1 cut(s)	1116
BpuEI	CTTGAG	3 cut(s)	987, 1114, 2621
BpuMI	CCSGG	1 cut(s)	1751
Bsa29I	ATCGAT	1 cut(s)	1951
BsaBI	GATNNNNATC	2 cut(s)	9, 306
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	576
BsaJI	CCNNGG	6 cut(s)	927, 963, 1287, 1566, 1784, 1904
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 185, 1490, 1520, 1805, 1835
Bsc4I	CCNNNNNNNGG	8 cut(s)	253, 744, 867, 1454, 1774, 1799, 1877, 2575
Bse118I	RCCGGY	3 cut(s)	233, 841, 1669
Bse1I	ACTGG	7 cut(s)	58, 421, 798, 1275, 1308, 1872, 2132
Bse21I	CCTNAGG	2 cut(s)	1617, 2318
Bse3DI	GCAATG	2 cut(s)	454, 1380
Bse8I	GATNNNNATC	2 cut(s)	9, 306
BseBI	CCWGG	6 cut(s)	175, 254, 877, 1184, 1477, 2292
BseCI	ATCGAT	1 cut(s)	1951
BseDI	CCNNGG	6 cut(s)	927, 963, 1287, 1566, 1784, 1904
BseGI	GGATG	9 cut(s)	10, 619, 663, 820, 1125, 1249, 1422, 1764, 1780
BseJI	GATNNNNATC	2 cut(s)	9, 306
BseLI	CCNNNNNNNGG	8 cut(s)	253, 744, 867, 1454, 1774, 1799, 1877, 2575
BseMI	GCAATG	2 cut(s)	454, 1380
BseMII	CTCAG	6 cut(s)	507, 1032, 1068, 1107, 1197, 2332
BseNI	ACTGG	7 cut(s)	58, 421, 798, 1275, 1308, 1872, 2132
BseRI	GAGGAG	4 cut(s)	535, 1058, 1354, 1829
BsgI	GTGCAG	3 cut(s)	128, 995, 2603
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	9 cut(s)	77, 200, 298, 488, 748, 2244, 2369, 2476, 2502
BshNI	GGYRCC	4 cut(s)	959, 1515, 1576, 1866
BshVI	ATCGAT	1 cut(s)	1951
BsiSI	CCGG	4 cut(s)	234, 842, 1670, 1750
BslFI	GGGAC	4 cut(s)	230, 1011, 1766, 2572
BslI	CCNNNNNNNGG	8 cut(s)	253, 744, 867, 1454, 1774, 1799, 1877, 2575
BsmAI	GTCTC	6 cut(s)	232, 517, 576, 1157, 1548, 2008
BsmFI	GGGAC	4 cut(s)	230, 1011, 1766, 2572
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	9 cut(s)	77, 200, 298, 488, 748, 2244, 2369, 2476, 2502
Bso31I	GGTCTC	1 cut(s)	576
Bsp143I	GATC	6 cut(s)	63, 307, 1432, 1880, 2008, 2020
Bsp1720I	GCTNAGC	1 cut(s)	1116
Bsp19I	CCATGG	2 cut(s)	1287, 1784
BspACI	CCGC	9 cut(s)	91, 184, 606, 609, 913, 994, 1513, 2224, 2366
BspANI	GGCC	9 cut(s)	77, 200, 298, 488, 748, 2244, 2369, 2476, 2502
BspCNI	CTCAG	6 cut(s)	508, 1033, 1069, 1108, 1198, 2331
BspDI	ATCGAT	1 cut(s)	1951
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	2037
BspMAI	CTGCAG	2 cut(s)	1338, 2008
BspMI	ACCTGC	2 cut(s)	1341, 2625
BspPI	GGATC	5 cut(s)	71, 302, 1427, 1440, 1888
BspQI	GCTCTTC	1 cut(s)	2193
BspT107I	GGYRCC	4 cut(s)	959, 1515, 1576, 1866
BspTNI	GGTCTC	1 cut(s)	576
BsrBI	CCGCTC	2 cut(s)	913, 1513
BsrDI	GCAATG	2 cut(s)	454, 1380
BsrFI	RCCGGY	3 cut(s)	233, 841, 1669
BsrI	ACTGG	7 cut(s)	58, 421, 798, 1275, 1308, 1872, 2132
BssAI	RCCGGY	3 cut(s)	233, 841, 1669
BssECI	CCNNGG	6 cut(s)	927, 963, 1287, 1566, 1784, 1904
BssMI	GATC	6 cut(s)	63, 307, 1432, 1880, 2008, 2020
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	2414
BssT1I	CCWWGG	4 cut(s)	927, 1287, 1784, 1904
Bst2BI	CACGAG	1 cut(s)	2414
Bst2UI	CCWGG	6 cut(s)	175, 254, 877, 1184, 1477, 2292
Bst4CI	ACNGT	2 cut(s)	1258, 1759
Bst6I	CTCTTC	5 cut(s)	571, 1272, 1443, 2148, 2193
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	6 cut(s)	107, 669, 843, 895, 1378, 1671
BstDEI	CTNAG	8 cut(s)	516, 1041, 1077, 1116, 1206, 1617, 2318, 2478
BstDSI	CCRYGG	2 cut(s)	1287, 1784
BstF5I	GGATG	9 cut(s)	10, 619, 663, 820, 1125, 1249, 1422, 1764, 1780
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	105, 2390
BstKTI	GATC	6 cut(s)	66, 310, 1435, 1883, 2011, 2023
BstMAI	GTCTC	6 cut(s)	232, 517, 576, 1157, 1548, 2008
BstMBI	GATC	6 cut(s)	63, 307, 1432, 1880, 2008, 2020
BstNI	CCWGG	6 cut(s)	175, 254, 877, 1184, 1477, 2292
BstNSI	RCATGY	1 cut(s)	2117
BstSCI	CCNGG	7 cut(s)	173, 252, 875, 1182, 1475, 1749, 2290
BstSFI	CTRYAG	3 cut(s)	1082, 1334, 2004
BstUI	CGCG	1 cut(s)	105
BstV2I	GAAGAC	2 cut(s)	168, 1699
BstX2I	RGATCY	2 cut(s)	1432, 1880
BstXI	CCANNNNNNTGG	1 cut(s)	2402
BstYI	RGATCY	2 cut(s)	1432, 1880
Bsu15I	ATCGAT	1 cut(s)	1951
Bsu36I	CCTNAGG	2 cut(s)	1617, 2318
BsuI	GTATCC	4 cut(s)	674, 1480, 2231, 2605
BsuRI	GGCC	9 cut(s)	77, 200, 298, 488, 748, 2244, 2369, 2476, 2502
BsuTUI	ATCGAT	1 cut(s)	1951
BtgI	CCRYGG	2 cut(s)	1287, 1784
BtgZI	GCGATG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	1465
BtsCI	GGATG	9 cut(s)	10, 619, 663, 820, 1125, 1249, 1422, 1764, 1780
BtsIMutI	CAGTG	6 cut(s)	65, 805, 1301, 1333, 1879, 2125
BveI	ACCTGC	2 cut(s)	1341, 2625
Cac8I	GCNNGC	6 cut(s)	107, 669, 843, 895, 1378, 1671
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	2037
CfoI	GCGC	2 cut(s)	105, 2390
Cfr10I	RCCGGY	3 cut(s)	233, 841, 1669
Cfr13I	GGNCC	6 cut(s)	52, 998, 1264, 1621, 2368, 2586
ClaI	ATCGAT	1 cut(s)	1951
CseI	GACGC	2 cut(s)	226, 2500
CsiI	ACCWGGT	1 cut(s)	2290
Csp6I	GTAC	4 cut(s)	1007, 1577, 1822, 1961
CspCI	CAANNNNNGTGG	2 cut(s)	673, 708
CviQI	GTAC	4 cut(s)	1007, 1577, 1822, 1961
DdeI	CTNAG	8 cut(s)	516, 1041, 1077, 1116, 1206, 1617, 2318, 2478
DpnI	GATC	6 cut(s)	65, 309, 1434, 1882, 2010, 2022
DpnII	GATC	6 cut(s)	63, 307, 1432, 1880, 2008, 2020
DraI	TTTAAA	1 cut(s)	273
DriI	GACNNNNNGTC	1 cut(s)	2584
EaeI	YGGCCR	1 cut(s)	2500
Eam1104I	CTCTTC	5 cut(s)	571, 1272, 1443, 2148, 2193
Eam1105I	GACNNNNNGTC	1 cut(s)	2584
EarI	CTCTTC	5 cut(s)	571, 1272, 1443, 2148, 2193
Eco130I	CCWWGG	4 cut(s)	927, 1287, 1784, 1904
Eco147I	AGGCCT	3 cut(s)	77, 298, 2476
Eco31I	GGTCTC	1 cut(s)	576
Eco32I	GATATC	1 cut(s)	1249
Eco47I	GGWCC	5 cut(s)	52, 998, 1264, 1621, 2586
Eco57I	CTGAAG	2 cut(s)	306, 2217
Eco81I	CCTNAGG	2 cut(s)	1617, 2318
EcoO109I	RGGNCCY	3 cut(s)	52, 998, 1621
EcoRI	GAATTC	2 cut(s)	717, 871
EcoRII	CCWGG	6 cut(s)	173, 252, 875, 1182, 1475, 2290
EcoRV	GATATC	1 cut(s)	1249
EcoT14I	CCWWGG	4 cut(s)	927, 1287, 1784, 1904
EcoT22I	ATGCAT	1 cut(s)	1950
ErhI	CCWWGG	4 cut(s)	927, 1287, 1784, 1904
FalI	AAGNNNNNCTT	8 cut(s)	188, 220, 705, 737, 1214, 1246, 2081, 2113
FaqI	GGGAC	4 cut(s)	230, 1011, 1766, 2572
FauI	CCCGC	2 cut(s)	602, 987
FbaI	TGATCA	1 cut(s)	2020
FblI	GTMKAC	1 cut(s)	1731
FokI	GGATG	9 cut(s)	17, 626, 670, 827, 1112, 1256, 1429, 1751, 1767
FspBI	CTAG	6 cut(s)	335, 356, 393, 1053, 1856, 2487
GlaI	GCGC	2 cut(s)	104, 2389
GsuI	CTGGAG	3 cut(s)	41, 157, 1617
HaeIII	GGCC	9 cut(s)	77, 200, 298, 488, 748, 2244, 2369, 2476, 2502
HapII	CCGG	4 cut(s)	234, 842, 1670, 1750
HgaI	GACGC	2 cut(s)	226, 2500
HhaI	GCGC	2 cut(s)	105, 2390
Hin1I	GRCGYC	1 cut(s)	237
Hin6I	GCGC	2 cut(s)	103, 2388
HinP1I	GCGC	2 cut(s)	103, 2388
HincII	GTYRAC	2 cut(s)	1732, 2542
HindII	GTYRAC	2 cut(s)	1732, 2542
HindIII	AAGCTT	1 cut(s)	1174
HpaII	CCGG	4 cut(s)	234, 842, 1670, 1750
HphI	GGTGA	2 cut(s)	1222, 1739
Hpy166II	GTNNAC	4 cut(s)	1732, 1822, 1999, 2542
Hpy188I	TCNGA	6 cut(s)	32, 151, 1443, 1567, 2013, 2197
Hpy188III	TCNNGA	7 cut(s)	14, 493, 573, 1106, 1414, 2038, 2414
Hpy8I	GTNNAC	4 cut(s)	1732, 1822, 1999, 2542
Hpy99I	CGWCG	4 cut(s)	170, 242, 245, 487
HpyAV	CCTTC	7 cut(s)	499, 950, 973, 1042, 1474, 1714, 2176
HpyCH4III	ACNGT	2 cut(s)	1258, 1759
HpyCH4IV	ACGT	2 cut(s)	1464, 2644
HpyF3I	CTNAG	8 cut(s)	516, 1041, 1077, 1116, 1206, 1617, 2318, 2478
HpySE526I	ACGT	2 cut(s)	1464, 2644
Hsp92I	GRCGYC	1 cut(s)	237
HspAI	GCGC	2 cut(s)	103, 2388
KpnI	GGTACC	1 cut(s)	1580
KroI	GCCGGC	2 cut(s)	841, 1669
KroNI	GCCGGC	2 cut(s)	843, 1671
Ksp22I	TGATCA	1 cut(s)	2020
Kzo9I	GATC	6 cut(s)	63, 307, 1432, 1880, 2008, 2020
LguI	GCTCTTC	1 cut(s)	2193
LmnI	GCTCC	5 cut(s)	176, 512, 596, 910, 1678
LweI	GCATC	4 cut(s)	112, 654, 1789, 1957
MabI	ACCWGGT	1 cut(s)	2290
MaeI	CTAG	6 cut(s)	335, 356, 393, 1053, 1856, 2487
MaeII	ACGT	2 cut(s)	1464, 2644
MaeIII	GTNAC	4 cut(s)	1210, 1328, 1367, 2411
MalI	GATC	6 cut(s)	65, 309, 1434, 1882, 2010, 2022
MbiI	CCGCTC	2 cut(s)	913, 1513
MboI	GATC	6 cut(s)	63, 307, 1432, 1880, 2008, 2020
MfeI	CAATTG	1 cut(s)	1556
MflI	RGATCY	2 cut(s)	1432, 1880
MlsI	TGGCCA	1 cut(s)	2502
MluNI	TGGCCA	1 cut(s)	2502
MlyI	GAGTC	2 cut(s)	1658, 2537
MmeI	TCCRAC	4 cut(s)	1242, 1791, 2064, 2159
Mox20I	TGGCCA	1 cut(s)	2502
Mph1103I	ATGCAT	1 cut(s)	1950
MroNI	GCCGGC	2 cut(s)	841, 1669
MroXI	GAANNNNTTC	3 cut(s)	1065, 2093, 2202
MscI	TGGCCA	1 cut(s)	2502
MseI	TTAA	7 cut(s)	272, 771, 1683, 2028, 2069, 2132, 2235
MslI	CAYNNNNRTG	6 cut(s)	656, 761, 1256, 1872, 2211, 2400
Msp20I	TGGCCA	1 cut(s)	2502
MspA1I	CMGCKG	3 cut(s)	606, 1583, 2366
MspI	CCGG	4 cut(s)	234, 842, 1670, 1750
MspR9I	CCNGG	7 cut(s)	175, 254, 877, 1184, 1477, 1751, 2292
MunI	CAATTG	1 cut(s)	1556
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	6 cut(s)	175, 254, 877, 1184, 1477, 2292
MvnI	CGCG	1 cut(s)	105
NaeI	GCCGGC	2 cut(s)	843, 1671
NciI	CCSGG	1 cut(s)	1751
NcoI	CCATGG	2 cut(s)	1287, 1784
NdeII	GATC	6 cut(s)	63, 307, 1432, 1880, 2008, 2020
NgoMIV	GCCGGC	2 cut(s)	841, 1669
NmeAIII	GCCGAG	2 cut(s)	286, 988
NmuCI	GTSAC	3 cut(s)	1210, 1328, 2411
NsiI	ATGCAT	1 cut(s)	1950
NspI	RCATGY	1 cut(s)	2117
OliI	CACNNNNGTG	2 cut(s)	1256, 1872
PagI	TCATGA	1 cut(s)	2037
PceI	AGGCCT	3 cut(s)	77, 298, 2476
PciI	ACATGT	1 cut(s)	2113
PciSI	GCTCTTC	1 cut(s)	2193
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 162
PctI	GAATGC	1 cut(s)	1042
PdiI	GCCGGC	2 cut(s)	843, 1671
PdmI	GAANNNNTTC	3 cut(s)	1065, 2093, 2202
PfeI	GAWTC	9 cut(s)	146, 405, 429, 587, 1102, 1307, 1532, 1922, 2257
PfoI	TCCNGGA	2 cut(s)	173, 875
PleI	GAGTC	2 cut(s)	1657, 2537
PpsI	GAGTC	2 cut(s)	1657, 2537
PpuMI	RGGWCCY	3 cut(s)	52, 998, 1621
PscI	ACATGT	1 cut(s)	2113
Psp5II	RGGWCCY	3 cut(s)	52, 998, 1621
Psp6I	CCWGG	6 cut(s)	173, 252, 875, 1182, 1475, 2290
PspGI	CCWGG	6 cut(s)	173, 252, 875, 1182, 1475, 2290
PspPI	GGNCC	6 cut(s)	52, 998, 1264, 1621, 2368, 2586
PspPPI	RGGWCCY	3 cut(s)	52, 998, 1621
PstI	CTGCAG	2 cut(s)	1338, 2008
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	1432, 1880
PvuII	CAGCTG	1 cut(s)	1583
RsaI	GTAC	4 cut(s)	1008, 1578, 1823, 1962
RsaNI	GTAC	4 cut(s)	1007, 1577, 1822, 1961
RseI	CAYNNNNRTG	6 cut(s)	656, 761, 1256, 1872, 2211, 2400
SalI	GTCGAC	1 cut(s)	1730
SapI	GCTCTTC	1 cut(s)	2193
SaqAI	TTAA	7 cut(s)	272, 771, 1683, 2028, 2069, 2132, 2235
Sau3AI	GATC	6 cut(s)	63, 307, 1432, 1880, 2008, 2020
Sau96I	GGNCC	6 cut(s)	52, 998, 1264, 1621, 2368, 2586
SchI	GAGTC	2 cut(s)	1658, 2537
ScrFI	CCNGG	7 cut(s)	175, 254, 877, 1184, 1477, 1751, 2292
SexAI	ACCWGGT	1 cut(s)	2290
SfaNI	GCATC	4 cut(s)	112, 654, 1789, 1957
SfcI	CTRYAG	3 cut(s)	1082, 1334, 2004
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	5 cut(s)	52, 998, 1264, 1621, 2586
SmiMI	CAYNNNNRTG	6 cut(s)	656, 761, 1256, 1872, 2211, 2400
SmlI	CTYRAG	3 cut(s)	1002, 1093, 2600
SmoI	CTYRAG	3 cut(s)	1002, 1093, 2600
SseBI	AGGCCT	3 cut(s)	77, 298, 2476
SsiI	CCGC	9 cut(s)	91, 184, 606, 609, 913, 994, 1513, 2224, 2366
SspI	AATATT	2 cut(s)	1296, 2308
SspMI	CTAG	6 cut(s)	335, 356, 393, 1053, 1856, 2487
StuI	AGGCCT	3 cut(s)	77, 298, 2476
StyD4I	CCNGG	7 cut(s)	173, 252, 875, 1182, 1475, 1749, 2290
StyI	CCWWGG	4 cut(s)	927, 1287, 1784, 1904
TaaI	ACNGT	2 cut(s)	1258, 1759
TaiI	ACGT	2 cut(s)	1467, 2647
TaqI	TCGA	4 cut(s)	574, 1731, 1920, 1951
TaqII	GACCGA	2 cut(s)	558, 1281
TauI	GCSGC	3 cut(s)	186, 609, 2369
TfiI	GAWTC	9 cut(s)	146, 405, 429, 587, 1102, 1307, 1532, 1922, 2257
Tru1I	TTAA	7 cut(s)	272, 771, 1683, 2028, 2069, 2132, 2235
Tru9I	TTAA	7 cut(s)	272, 771, 1683, 2028, 2069, 2132, 2235
TscAI	CASTG	6 cut(s)	65, 805, 1308, 1333, 1879, 2132
TseFI	GTSAC	3 cut(s)	1210, 1328, 2411
Tsp45I	GTSAC	3 cut(s)	1210, 1328, 2411
TspDTI	ATGAA	7 cut(s)	174, 560, 674, 1481, 2054, 2229, 2270
TspRI	CASTG	6 cut(s)	65, 805, 1308, 1333, 1879, 2132
VpaK11BI	GGWCC	5 cut(s)	52, 998, 1264, 1621, 2586
XapI	RAATTY	4 cut(s)	717, 871, 1030, 2377
XceI	RCATGY	1 cut(s)	2117
XcmI	CCANNNNNNNNNTGG	2 cut(s)	65, 2402
XmiI	GTMKAC	1 cut(s)	1731
XmnI	GAANNNNTTC	3 cut(s)	1065, 2093, 2202
XspI	CTAG	6 cut(s)	335, 356, 393, 1053, 1856, 2487
Zsp2I	ATGCAT	1 cut(s)	1950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.