RchiOBHm_Chr6g0293801

tuftelin-interacting protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
56324942 .. 56326439
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26364

Sequence Viewer

Length: 1188 bp
ATGTCTGGCCTCAATAGTTGGCAGGCTGAGGACCCCGAACCAATGCTCGTGTTTTTGGAGTCTTGGAAGGAGCTACTGCCCACTTCTATTGTTCATGACATATTGGATATGGTGGTCTTGCCTGAATTGAAGGTTGCTATACAGTTGTGGGAACCAAACTTGGGAACTGTTCCTATCCATTTGTGGGTGCATCCATGGCTACCGTTACTGTTTGAATTGGGAGACAAGTATCAATTGGAGCTGGAGGAGTTGTTTGGAACAATGAGGTTGAAGTTGTGCGATTTTCTTAGCTCATGGCACCCGAGAGATGGGTCTGGTTATACCATAGTGTCACCGTGGAAAGCGGTGTTTGATTCTACCACTTGGGAACTGCTTATGCGTAGATATGTAGTTCCCAAGTTGGAGCTCGTGCTACTAGAAGATTTTGAAGTGAACCCTTTAAATCAGAAGCTTGATCAGTTTAATTGGGTCATGAGGTGGGCTTCTGCTATTCCTATGCATCTGATGGTCAATGTGATGGTGAAGGGCTTCTTCCCGAATTGGATAAAGGGTTTGCATTTCTGGTTGAAAGCCAATCCGAACTTTGAAGATGTTGCGGATTGGTATAGGGGTTGGAAGGAACTTATCCCCAAAGAGTTTCATGCGAATGAAAGTATTCGTTGTCAGCTTGAGCGTGGTCTTAGTATGATGAACCGGGCTGTTGAGGATATGGAGGCTGCTCAAGCTGATTTGAAAGAGAATTTTAGGGTAGTTGAAAAAAGGCAGGGGAAAGCAGTACCAGCAGCCCAAGCAAACTTCGGCGGCCAAACCAACATGGATGGCATTGATCATGAGATGAATTTGAAAGAGAATGGTAAGATTGATCAAGTGCAATTTGAGGCAAAGAAGAGAGCAGCAGCTTTTCTAGCCATTGCGAAATTGGGCAGCACAACTGACGTGGATGACATTAGTCATCAAATGACCCTGAAAGATGTTATTGAAGCTGAGGCGCAGGAACATGGCTTGCTATTTAGGCCTAAACCTGGGCGAATGTTTGATGGTCACCAGGTATACGGCTTTGGTAACATAAGCATAATGGTGGACTTTCTAAAGGAGAAGATATATGCCCAAACAGAAGCGACGTGGTCTCTTGTGTCCCTTGAGAGGTTACTTGAGTTACACAAGAACAAGGAGACGATGAGTTTCTGA

Protein Analysis

395

Amino Acids

45.7

Weight (kDa)

5.32

Isoelectric Point (pI)

23.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCFC PF07842 3 - 183 2.8e-49 GC-rich sequence DNA-binding factor-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 1050
AciI CCGC 3 cut(s) 344, 596, 801
AcoI YGGCCR 1 cut(s) 802
AcsI RAATTY 2 cut(s) 739, 838
AfaI GTAC 1 cut(s) 777
AfiI CCNNNNNNNGG 5 cut(s) 161, 184, 308, 1022, 1143
AjiI CACGTC 2 cut(s) 937, 1122
AjnI CCWGG 2 cut(s) 1021, 1044
AluBI AGCT 9 cut(s) 73, 241, 291, 406, 451, 667, 725, 899, 983
AluI AGCT 9 cut(s) 73, 241, 291, 406, 451, 667, 725, 899, 983
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 3 cut(s) 216, 1131, 1166
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 3 cut(s) 7, 802, 1013
ApeKI GCWGC 5 cut(s) 716, 782, 893, 896, 924
ApoI RAATTY 2 cut(s) 739, 838
Asp700I GAANNNNTTC 2 cut(s) 527, 654
AspLEI GCGC 1 cut(s) 991
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 695
AsuHPI GGTGA 3 cut(s) 324, 532, 1034
AvaI CYCGRG 1 cut(s) 301
AvaII GGWCC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 408
BauI CACGAG 2 cut(s) 47, 407
Bbv12I GWGCWC 1 cut(s) 408
BbvCI CCTCAGC 2 cut(s) 27, 984
BbvI GCAGC 5 cut(s) 703, 794, 905, 908, 936
BccI CCATC 5 cut(s) 302, 499, 511, 812, 1031
BceAI ACGGC 1 cut(s) 1069
BciT130I CCWGG 2 cut(s) 1023, 1046
BclI TGATCA 3 cut(s) 454, 826, 862
BcnI CCSGG 1 cut(s) 695
BcoDI GTCTC 3 cut(s) 216, 1131, 1166
BfaI CTAG 2 cut(s) 416, 905
BisI GCNGC 6 cut(s) 717, 783, 802, 894, 897, 925
BlsI GCNGC 6 cut(s) 718, 784, 803, 895, 898, 926
Bme1390I CCNGG 3 cut(s) 695, 1023, 1046
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 301
BmgBI CACGTC 2 cut(s) 937, 1122
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 3 cut(s) 33, 153, 299
BmrFI CCNGG 3 cut(s) 695, 1023, 1046
BmsI GCATC 2 cut(s) 199, 508
BoxI GACNNNNGTC 1 cut(s) 948
BpmI CTGGAG 1 cut(s) 263
Bpu10I CCTNAGC 2 cut(s) 27, 984
BpuEI CTTGAG 4 cut(s) 689, 705, 1160, 1172
BpuMI CCSGG 1 cut(s) 695
BsaI GGTCTC 1 cut(s) 1131
BsaJI CCNNGG 3 cut(s) 194, 335, 1022
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 184, 308, 1022, 1143
Bse3DI GCAATG 1 cut(s) 909
BseBI CCWGG 2 cut(s) 1023, 1046
BseDI CCNNGG 3 cut(s) 194, 335, 1022
BseGI GGATG 3 cut(s) 190, 823, 946
BseLI CCNNNNNNNGG 5 cut(s) 161, 184, 308, 1022, 1143
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 2 cut(s) 18, 975
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 5 cut(s) 703, 794, 905, 908, 936
BshFI GGCC 3 cut(s) 9, 804, 1015
BshNI GGYRCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 1 cut(s) 694
BslFI GGGAC 1 cut(s) 1120
BslI CCNNNNNNNGG 5 cut(s) 161, 184, 308, 1022, 1143
BsmAI GTCTC 3 cut(s) 216, 1131, 1166
BsmBI CGTCTC 1 cut(s) 1166
BsmFI GGGAC 1 cut(s) 1120
BsnI GGCC 3 cut(s) 9, 804, 1015
Bso31I GGTCTC 1 cut(s) 1131
BsoBI CYCGRG 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 3 cut(s) 454, 826, 862
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 3 cut(s) 344, 596, 801
BspANI GGCC 3 cut(s) 9, 804, 1015
BspCNI CTCAG 2 cut(s) 19, 976
BspHI TCATGA 3 cut(s) 94, 471, 829
BspLI GGNNCC 3 cut(s) 33, 153, 299
BspT107I GGYRCC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 1131
BsrDI GCAATG 1 cut(s) 909
BssECI CCNNGG 3 cut(s) 194, 335, 1022
BssMI GATC 3 cut(s) 454, 826, 862
BssNAI GTATAC 1 cut(s) 1051
BssSI CACGAG 2 cut(s) 47, 407
BssT1I CCWWGG 1 cut(s) 194
Bst1107I GTATAC 1 cut(s) 1051
Bst2BI CACGAG 2 cut(s) 47, 407
Bst2UI CCWGG 2 cut(s) 1023, 1046
Bst4CI ACNGT 5 cut(s) 144, 169, 204, 210, 336
Bst6I CTCTTC 1 cut(s) 881
BstC8I GCNNGC 2 cut(s) 24, 1004
BstDEI CTNAG 4 cut(s) 27, 287, 680, 984
BstDSI CCRYGG 2 cut(s) 194, 335
BstEII GGTNACC 1 cut(s) 1040
BstF5I GGATG 3 cut(s) 190, 823, 946
BstHHI GCGC 1 cut(s) 991
BstKTI GATC 3 cut(s) 457, 829, 865
BstMAI GTCTC 3 cut(s) 216, 1131, 1166
BstMBI GATC 3 cut(s) 454, 826, 862
BstMWI GCNNNNNNNGC 6 cut(s) 196, 722, 779, 788, 905, 1012
BstNI CCWGG 2 cut(s) 1023, 1046
BstPAI GACNNNNGTC 1 cut(s) 948
BstPI GGTNACC 1 cut(s) 1040
BstSCI CCNGG 3 cut(s) 693, 1021, 1044
BstV1I GCAGC 5 cut(s) 703, 794, 905, 908, 936
BstZ17I GTATAC 1 cut(s) 1051
BsuRI GGCC 3 cut(s) 9, 804, 1015
BtgI CCRYGG 2 cut(s) 194, 335
BtrI CACGTC 2 cut(s) 937, 1122
BtsCI GGATG 3 cut(s) 190, 823, 946
Cac8I GCNNGC 2 cut(s) 24, 1004
CciI TCATGA 3 cut(s) 94, 471, 829
CfoI GCGC 1 cut(s) 991
Cfr13I GGNCC 1 cut(s) 31
CsiI ACCWGGT 1 cut(s) 1044
Csp6I GTAC 1 cut(s) 776
CspCI CAANNNNNGTGG 4 cut(s) 70, 105, 918, 953
CviAII CATG 8 cut(s) 95, 195, 294, 472, 641, 814, 830, 998
CviQI GTAC 1 cut(s) 776
DdeI CTNAG 4 cut(s) 27, 287, 680, 984
DpnI GATC 3 cut(s) 456, 828, 864
DpnII GATC 3 cut(s) 454, 826, 862
DraI TTTAAA 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 802
Eam1104I CTCTTC 1 cut(s) 881
EarI CTCTTC 1 cut(s) 881
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 194
Eco147I AGGCCT 1 cut(s) 1015
Eco24I GRGCYC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 1131
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 406
Eco88I CYCGRG 1 cut(s) 301
Eco91I GGTNACC 1 cut(s) 1040
EcoICRI GAGCTC 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 31
EcoO65I GGTNACC 1 cut(s) 1040
EcoRII CCWGG 2 cut(s) 1021, 1044
EcoT14I CCWWGG 1 cut(s) 194
EcoT22I ATGCAT 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 1166
FaeI CATG 8 cut(s) 98, 198, 297, 475, 644, 817, 833, 1001
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 1 cut(s) 1120
FatI CATG 8 cut(s) 94, 194, 293, 471, 640, 813, 829, 997
FbaI TGATCA 3 cut(s) 454, 826, 862
FblI GTMKAC 1 cut(s) 1050
Fnu4HI GCNGC 6 cut(s) 717, 783, 802, 894, 897, 925
FokI GGATG 3 cut(s) 177, 830, 953
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 6 cut(s) 717, 783, 802, 894, 897, 925
FspBI CTAG 2 cut(s) 416, 905
GlaI GCGC 1 cut(s) 990
GluI GCNGC 6 cut(s) 717, 783, 802, 894, 897, 925
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 3 cut(s) 9, 804, 1015
HapII CCGG 1 cut(s) 694
HhaI GCGC 1 cut(s) 991
Hin1II CATG 8 cut(s) 98, 198, 297, 475, 644, 817, 833, 1001
Hin6I GCGC 1 cut(s) 989
HinP1I GCGC 1 cut(s) 989
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 2 cut(s) 59, 353
HpaII CCGG 1 cut(s) 694
HphI GGTGA 3 cut(s) 324, 532, 1034
Hpy166II GTNNAC 3 cut(s) 433, 1051, 1081
Hpy188I TCNGA 4 cut(s) 447, 504, 579, 1187
Hpy188III TCNNGA 4 cut(s) 95, 472, 535, 830
Hpy8I GTNNAC 3 cut(s) 433, 1051, 1081
Hpy99I CGWCG 1 cut(s) 1123
HpyAV CCTTC 4 cut(s) 61, 124, 517, 610
HpyCH4III ACNGT 5 cut(s) 144, 169, 204, 210, 336
HpyCH4IV ACGT 2 cut(s) 936, 1121
HpyCH4V TGCA 4 cut(s) 190, 499, 556, 871
HpyF10VI GCNNNNNNNGC 6 cut(s) 196, 722, 779, 788, 905, 1012
HpyF3I CTNAG 4 cut(s) 27, 287, 680, 984
HpySE526I ACGT 2 cut(s) 936, 1121
Hsp92II CATG 8 cut(s) 98, 198, 297, 475, 644, 817, 833, 1001
HspAI GCGC 1 cut(s) 989
Ksp22I TGATCA 3 cut(s) 454, 826, 862
Kzo9I GATC 3 cut(s) 454, 826, 862
LmnI GCTCC 3 cut(s) 70, 238, 403
Lsp1109I GCAGC 5 cut(s) 703, 794, 905, 908, 936
LweI GCATC 2 cut(s) 199, 508
MabI ACCWGGT 1 cut(s) 1044
MaeI CTAG 2 cut(s) 416, 905
MaeII ACGT 2 cut(s) 936, 1121
MaeIII GTNAC 6 cut(s) 204, 330, 1040, 1061, 1146, 1155
MalI GATC 3 cut(s) 456, 828, 864
MboI GATC 3 cut(s) 454, 826, 862
MboII GAAGA 5 cut(s) 431, 523, 599, 898, 1108
MfeI CAATTG 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 9 cut(s) 125, 215, 233, 463, 538, 739, 838, 872, 917
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 2 cut(s) 381, 593
Mph1103I ATGCAT 1 cut(s) 501
MroXI GAANNNNTTC 2 cut(s) 527, 654
MseI TTAA 2 cut(s) 440, 462
MslI CAYNNNNRTG 2 cut(s) 645, 1076
MspI CCGG 1 cut(s) 694
MspR9I CCNGG 3 cut(s) 695, 1023, 1046
MunI CAATTG 1 cut(s) 233
MvaI CCWGG 2 cut(s) 1023, 1046
MwoI GCNNNNNNNGC 6 cut(s) 196, 722, 779, 788, 905, 1012
NciI CCSGG 1 cut(s) 695
NcoI CCATGG 1 cut(s) 194
NdeII GATC 3 cut(s) 454, 826, 862
NlaIII CATG 8 cut(s) 98, 198, 297, 475, 644, 817, 833, 1001
NlaIV GGNNCC 3 cut(s) 33, 153, 299
NmuCI GTSAC 2 cut(s) 330, 1040
NsiI ATGCAT 1 cut(s) 501
PagI TCATGA 3 cut(s) 94, 471, 829
PceI AGGCCT 1 cut(s) 1015
PdmI GAANNNNTTC 2 cut(s) 527, 654
PfeI GAWTC 1 cut(s) 353
PflFI GACNNNGTC 1 cut(s) 1123
PkrI GCNGC 6 cut(s) 718, 784, 803, 895, 898, 926
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 31
PshAI GACNNNNGTC 1 cut(s) 948
Psp124BI GAGCTC 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 1021, 1044
PspEI GGTNACC 1 cut(s) 1040
PspGI CCWGG 2 cut(s) 1021, 1044
PspN4I GGNNCC 3 cut(s) 33, 153, 299
PspPI GGNCC 1 cut(s) 31
PspPPI RGGWCCY 1 cut(s) 31
PsyI GACNNNGTC 1 cut(s) 1123
RsaI GTAC 1 cut(s) 777
RsaNI GTAC 1 cut(s) 776
RseI CAYNNNNRTG 2 cut(s) 645, 1076
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 2 cut(s) 440, 462
SatI GCNGC 6 cut(s) 717, 783, 802, 894, 897, 925
Sau3AI GATC 3 cut(s) 454, 826, 862
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 3 cut(s) 695, 1023, 1046
SduI GDGCHC 1 cut(s) 408
SexAI ACCWGGT 1 cut(s) 1044
SfaNI GCATC 2 cut(s) 199, 508
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 2 cut(s) 645, 1076
SmlI CTYRAG 4 cut(s) 668, 720, 1139, 1151
SmoI CTYRAG 4 cut(s) 668, 720, 1139, 1151
Sse9I AATT 9 cut(s) 125, 215, 233, 463, 538, 739, 838, 872, 917
SseBI AGGCCT 1 cut(s) 1015
SsiI CCGC 3 cut(s) 344, 596, 801
SspMI CTAG 2 cut(s) 416, 905
SstI GAGCTC 1 cut(s) 408
StuI AGGCCT 1 cut(s) 1015
StyD4I CCNGG 3 cut(s) 693, 1021, 1044
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 5 cut(s) 144, 169, 204, 210, 336
TaiI ACGT 2 cut(s) 939, 1124
TasI AATT 9 cut(s) 125, 215, 233, 463, 538, 739, 838, 872, 917
TauI GCSGC 1 cut(s) 804
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 2 cut(s) 440, 462
Tru9I TTAA 2 cut(s) 440, 462
TseFI GTSAC 2 cut(s) 330, 1040
TseI GCWGC 5 cut(s) 716, 782, 893, 896, 924
Tsp45I GTSAC 2 cut(s) 330, 1040
TspDTI ATGAA 5 cut(s) 83, 629, 663, 704, 851
Tth111I GACNNNGTC 1 cut(s) 1123
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 2 cut(s) 739, 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 916
XmiI GTMKAC 1 cut(s) 1050
XmnI GAANNNNTTC 2 cut(s) 527, 654
XspI CTAG 2 cut(s) 416, 905
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.