Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Forward (+)

36586360 .. 36591970

Gene Structure 5611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19558

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2625 bp

ATGGATGATTATCAGGAGATGGAGAGGTTCGGAATGGAGAACGATTACGAGGACCTCCAGTGGATCGGTGGCGAGGCCTATTACCGAAACCGCAAGAGTAAGCGCGTGCAGACCAAAGACGATGCTCTCTACGGCTCGTTCGCTGATTCCGATGACGATGAAGACGACGGCTCCAGGAAACGTCGCAAAGAGCGAAAGGCCGACTTCACAAAGCCCGTCAGTTTTGTCTCCACCGGCGTCGTCGTCCCCAACCAGGAAGCCGAGAACGATTTAAAGCAGCAGAGCGATGATAGTAGGCCTGATATTGATCCTGCTGCTATTTCAGGTTCTGGTCTAGGCTTCAATAATTCTGGTCTAGGGTTCAATAATTCTGGTTTAGGATTCGGTAATACTGGTGGTTTAGGATTCAATCATTCAGTAGGCAATGATGATGAGGAAGATGACAGCAGTTTTCTGCCGTCGGCCTTCGGGAAGAAGATAAAGGAGGGAGCTGAGAGGAGACACAAGGAGAAAGAAAAGATGAAATTGCAGCAGCAGAGTAGTCGGTCTCAAAGAGATTTGGAATCTAAAGGAGCAATCAGCGGCGGGGATGGGGATTTGGGGGCCTTTGAGAAACACACAAAAGGCATTGGGATGAAGATGCTTGCAAAAATGGGATACAAAGGAGGTGGTCTTGGGAAGAACCAGCAAGGAATTCTTGCCCCCATTGAAGCCAAGTTGAGGCCAAAAAACATGGGTATGGGTTTTAATGATTACAAGGAAACCAAACAGCCCAGTGTGCAAGAATTGGATGAGGAAAAGCCCAAGAAGCAGTTGCCGGCTGCTACTGCCACCACCAAAAAGAGGAATTCCTGGAAGAAGATGGTTGCCGGCAGGACTAACAAGGAGCGGTATATATCTGCCAAGGAGTTGTTAGCCAAGAAAGAAGAAGAAGGTGCCGAGGTCTTTGTGCAGAAGGTGGTTGATATGCGGGGACCTCAAGTACGAGTTTTGACCAATTTGGAGAATTTGAATGCTGAGGAGAAGGCTAGGGAAGAAAATGTTCCCATGCCTGAGCTACAGCACAACTTGAGGTTGATTCTTGACATGGCTGAGCTTGACATCCAAAAGATTGATAGGGATTTGAGGAATGAGAGAGAGACTGCTATAAGCTTGAACCAGGAGAAAGAGAGATTGGAAGCTGAGGTGACTATGCAGAAGCAGCACTTGGATAGCTTGGATGATATCACAACTGTGTTGGACCGACTGGGAGAAGAGAAAGCCATGGGAATATTGACGCTGGATTCTCTGGCAAAGAGTTTCAGTGACCTGCAGAGGAGGTATGCCGATGACTACAAGTTATGTAACTTGGCTTGCATTGCCTGTTCCTTTGCACTCCCTTTGTTTATCAGGATGTTTCAAGGTTGGGATCCTCTTCGGAACCCCTCTCATGGAATGGACGTGGTATCCACCTGGAAGGCTTTACTTCATGGGGAGGGGGAGTATGAGCGGTGCCTTGATATATGGGATTCTTCAATGTCTCCTTATACCCAATTGGTTTCCGAGGTTGTGGTACCAGCTGTGAGGATTGCTGGAGTAAATACTTGGCAGCCTAAGGACCCTGAACCCATGCTTCGTTTTTTGGAGTCTTGGGAGAAATTGCTGCCGGCTCCTGTTCTTAATAGCATAGTGGATATGGTAGTCTTCCCCAAATTGAAGGAGGCAGTAGACTTTTGGGAACCTCACCGGGACACAGTTCCCATCCATGTCTGGGTGCATCCATGGCTACCACTATTAGGACACAAGTTGGAGGAGGTGTACCACACAATACGCTACAAGTTGAGTAATGTTCTAGGTGCATGGCACCCCAGTGATGGATCTGCTTATACGATACTCTCTCCTTGGAAAAAGGTTTTCGATTCTGCAAGTTGGGAACAGCTAATGCATCGATTTATAGTACCCAAATTGCAGCTTGTTTTGCAAGACTTCCAAGTAAACCCTGCAGATCAGAGACTTGATCAGTTTAATTGGGTCATGAGTTGGGCTTCTGCTATTCCAATTCATCTAATGGTAGATATGTTGGAGAAGTTTTTCTTCCCCAAGTGGCTACATGTTTTATATCACTGGTTAATATCAAACCCGAACTTTGAAGAGGTTTTGAATTGGTATAAAGGTTGGAAGGAACTTATATCTGAAGAGCTTCACGCAAATGAAAGTATCCGCTATCAGCTTAATTGTGGCCTTGACATGATGAATCGTGCTGTTGAGGGTATGGAGGTGGTTCAACCTGGTTTGAAAGAGAATATTAGCTACCTCAGGGTGCTTGAGCAAAGGCAATTTGAGGCACAGCAAAAAGCAGCAGCGGCCCATGCAAATTTGGGTGGCGCAGCCCATATTGATGGTGGTAGTCACGAGATGACCCTGAAAGATGTTATTGAAGCCCATGCACAGCAGAATGGGTTGCTATTTAGGCCTAAGCCTACTAGGACGCATAATGGCCACCAGATATACGGGTTTGGTAATGTAAGCATAATAGTTGACTCTCTAAATCAAAAGGTGTATGCCCAAACAGAGGACACTTGGTCCCTTGTATCCCTTGAGAAGTTGCTTGACCTGCACAATACTTCTCTTACAAGAAGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

874

Amino Acids

99.54

Weight (kDa)

5.76

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP_N	PF12457	2 - 97	6.8e-21	Tuftelin interacting protein N terminal
G-patch	PF01585	207 - 248	1.5e-14	G-patch domain
GCFC	PF07842	427 - 699	2.5e-91	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1317, 2601
Acc65I	GGTACC	1 cut(s)	1552
AccB1I	GGYRCC	4 cut(s)	935, 1491, 1552, 1842
AccBSI	CCGCTC	2 cut(s)	889, 1489
AccI	GTMKAC	1 cut(s)	1707
AccII	CGCG	1 cut(s)	105
AciI	CCGC	8 cut(s)	91, 582, 585, 889, 970, 1489, 2200, 2342
AclWI	GGATC	5 cut(s)	71, 302, 1403, 1416, 1864
AcoI	YGGCCR	1 cut(s)	2476
AcsI	RAATTY	4 cut(s)	693, 847, 1006, 2353
AcuI	CTGAAG	1 cut(s)	2193
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	4 cut(s)	984, 1554, 1799, 1938
AfiI	CCNNNNNNNGG	8 cut(s)	253, 720, 843, 1430, 1750, 1775, 1853, 2551
AflIII	ACRYGT	1 cut(s)	2089
AhdI	GACNNNNNGTC	1 cut(s)	2560
AjiI	CACGTC	1 cut(s)	1441
AjnI	CCWGG	6 cut(s)	173, 252, 851, 1158, 1451, 2266
AjuI	GAANNNNNNNTTGG	4 cut(s)	1157, 1189, 1190, 1222
AleI	CACNNNNGTG	2 cut(s)	1232, 1848
Alw26I	GTCTC	6 cut(s)	232, 493, 552, 1133, 1524, 1984
AlwI	GGATC	5 cut(s)	71, 302, 1403, 1416, 1864
AlwNI	CAGNNNCTG	1 cut(s)	329
ApoI	RAATTY	4 cut(s)	693, 847, 1006, 2353
Asp700I	GAANNNNTTC	3 cut(s)	1041, 2069, 2178
Asp718I	GGTACC	1 cut(s)	1552
AspLEI	GCGC	2 cut(s)	105, 2366
AspS9I	GGNCC	7 cut(s)	52, 603, 974, 1240, 1597, 2344, 2562
AsuC2I	CCSGG	1 cut(s)	1727
AsuHPI	GGTGA	2 cut(s)	1198, 1715
AvaII	GGWCC	5 cut(s)	52, 974, 1240, 1597, 2562
AxyI	CCTNAGG	2 cut(s)	1593, 2294
BalI	TGGCCA	1 cut(s)	2478
BamHI	GGATCC	1 cut(s)	1408
BanI	GGYRCC	4 cut(s)	935, 1491, 1552, 1842
BauI	CACGAG	1 cut(s)	2390
BbsI	GAAGAC	2 cut(s)	168, 1675
BbvCI	CCTCAGC	2 cut(s)	1017, 1182
BccI	CCATC	6 cut(s)	13, 584, 856, 1748, 1847, 2372
BceAI	ACGGC	3 cut(s)	148, 184, 442
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BciT130I	CCWGG	6 cut(s)	175, 254, 853, 1160, 1453, 2268
BciVI	GTATCC	4 cut(s)	650, 1456, 2207, 2581
BclI	TGATCA	1 cut(s)	1996
BcnI	CCSGG	1 cut(s)	1727
BcoDI	GTCTC	6 cut(s)	232, 493, 552, 1133, 1524, 1984
BfaI	CTAG	5 cut(s)	335, 356, 1029, 1832, 2463
BfmI	CTRYAG	3 cut(s)	1058, 1310, 1980
BfuAI	ACCTGC	2 cut(s)	1317, 2601
BfuI	GTATCC	4 cut(s)	650, 1456, 2207, 2581
BlpI	GCTNAGC	1 cut(s)	1092
Bme1390I	CCNGG	7 cut(s)	175, 254, 853, 1160, 1453, 1727, 2268
Bme18I	GGWCC	5 cut(s)	52, 974, 1240, 1597, 2562
BmeRI	GACNNNNNGTC	1 cut(s)	2560
BmgBI	CACGTC	1 cut(s)	1441
BmgT120I	GGNCC	7 cut(s)	52, 603, 974, 1240, 1597, 2344, 2562
BmrFI	CCNGG	7 cut(s)	175, 254, 853, 1160, 1453, 1727, 2268
BmrI	ACTGGG	3 cut(s)	768, 1256, 1842
BmsI	GCATC	4 cut(s)	112, 630, 1765, 1933
BmuI	ACTGGG	3 cut(s)	768, 1256, 1842
BpiI	GAAGAC	2 cut(s)	168, 1675
BpmI	CTGGAG	3 cut(s)	41, 157, 1593
Bpu10I	CCTNAGC	4 cut(s)	1017, 1053, 1182, 2454
Bpu1102I	GCTNAGC	1 cut(s)	1092
BpuEI	CTTGAG	4 cut(s)	963, 1090, 2324, 2597
BpuMI	CCSGG	1 cut(s)	1727
Bsa29I	ATCGAT	1 cut(s)	1927
BsaBI	GATNNNNATC	2 cut(s)	9, 306
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	552
BsaJI	CCNNGG	6 cut(s)	903, 939, 1263, 1542, 1760, 1880
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 185, 1466, 1496, 1781, 1811
Bsc4I	CCNNNNNNNGG	8 cut(s)	253, 720, 843, 1430, 1750, 1775, 1853, 2551
Bse118I	RCCGGY	4 cut(s)	233, 817, 869, 1645
Bse1I	ACTGG	6 cut(s)	58, 397, 774, 1251, 1848, 2108
Bse21I	CCTNAGG	2 cut(s)	1593, 2294
Bse3DI	GCAATG	2 cut(s)	430, 1356
Bse8I	GATNNNNATC	2 cut(s)	9, 306
BseBI	CCWGG	6 cut(s)	175, 254, 853, 1160, 1453, 2268
BseCI	ATCGAT	1 cut(s)	1927
BseDI	CCNNGG	6 cut(s)	903, 939, 1263, 1542, 1760, 1880
BseGI	GGATG	9 cut(s)	10, 595, 639, 796, 1101, 1225, 1398, 1740, 1756
BseJI	GATNNNNATC	2 cut(s)	9, 306
BseLI	CCNNNNNNNGG	8 cut(s)	253, 720, 843, 1430, 1750, 1775, 1853, 2551
BseMI	GCAATG	2 cut(s)	430, 1356
BseMII	CTCAG	6 cut(s)	483, 1008, 1044, 1083, 1173, 2308
BseNI	ACTGG	6 cut(s)	58, 397, 774, 1251, 1848, 2108
BseRI	GAGGAG	4 cut(s)	511, 1034, 1330, 1805
BsgI	GTGCAG	3 cut(s)	128, 971, 2579
Bsh1236I	CGCG	1 cut(s)	105
BshNI	GGYRCC	4 cut(s)	935, 1491, 1552, 1842
BshVI	ATCGAT	1 cut(s)	1927
BsiSI	CCGG	5 cut(s)	234, 818, 870, 1646, 1726
BslFI	GGGAC	4 cut(s)	230, 987, 1742, 2548
BslI	CCNNNNNNNGG	8 cut(s)	253, 720, 843, 1430, 1750, 1775, 1853, 2551
BsmAI	GTCTC	6 cut(s)	232, 493, 552, 1133, 1524, 1984
BsmFI	GGGAC	4 cut(s)	230, 987, 1742, 2548
BsmI	GAATGC	1 cut(s)	1018
Bso31I	GGTCTC	1 cut(s)	552
Bsp143I	GATC	6 cut(s)	63, 307, 1408, 1856, 1984, 1996
Bsp1720I	GCTNAGC	1 cut(s)	1092
Bsp19I	CCATGG	2 cut(s)	1263, 1760
BspACI	CCGC	8 cut(s)	91, 582, 585, 889, 970, 1489, 2200, 2342
BspCNI	CTCAG	6 cut(s)	484, 1009, 1045, 1084, 1174, 2307
BspDI	ATCGAT	1 cut(s)	1927
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	2013
BspMAI	CTGCAG	2 cut(s)	1314, 1984
BspMI	ACCTGC	2 cut(s)	1317, 2601
BspPI	GGATC	5 cut(s)	71, 302, 1403, 1416, 1864
BspQI	GCTCTTC	1 cut(s)	2169
BspT107I	GGYRCC	4 cut(s)	935, 1491, 1552, 1842
BspTNI	GGTCTC	1 cut(s)	552
BsrBI	CCGCTC	2 cut(s)	889, 1489
BsrDI	GCAATG	2 cut(s)	430, 1356
BsrFI	RCCGGY	4 cut(s)	233, 817, 869, 1645
BsrI	ACTGG	6 cut(s)	58, 397, 774, 1251, 1848, 2108
BssAI	RCCGGY	4 cut(s)	233, 817, 869, 1645
BssECI	CCNNGG	6 cut(s)	903, 939, 1263, 1542, 1760, 1880
BssMI	GATC	6 cut(s)	63, 307, 1408, 1856, 1984, 1996
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	2390
BssT1I	CCWWGG	4 cut(s)	903, 1263, 1760, 1880
Bst2BI	CACGAG	1 cut(s)	2390
Bst2UI	CCWGG	6 cut(s)	175, 254, 853, 1160, 1453, 2268
Bst4CI	ACNGT	2 cut(s)	1234, 1735
Bst6I	CTCTTC	4 cut(s)	1248, 1419, 2124, 2169
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	6 cut(s)	107, 645, 819, 871, 1354, 1647
BstDEI	CTNAG	8 cut(s)	492, 1017, 1053, 1092, 1182, 1593, 2294, 2454
BstDSI	CCRYGG	2 cut(s)	1263, 1760
BstF5I	GGATG	9 cut(s)	10, 595, 639, 796, 1101, 1225, 1398, 1740, 1756
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	105, 2366
BstKTI	GATC	6 cut(s)	66, 310, 1411, 1859, 1987, 1999
BstMAI	GTCTC	6 cut(s)	232, 493, 552, 1133, 1524, 1984
BstMBI	GATC	6 cut(s)	63, 307, 1408, 1856, 1984, 1996
BstNI	CCWGG	6 cut(s)	175, 254, 853, 1160, 1453, 2268
BstNSI	RCATGY	1 cut(s)	2093
BstSCI	CCNGG	7 cut(s)	173, 252, 851, 1158, 1451, 1725, 2266
BstSFI	CTRYAG	3 cut(s)	1058, 1310, 1980
BstUI	CGCG	1 cut(s)	105
BstV2I	GAAGAC	2 cut(s)	168, 1675
BstX2I	RGATCY	2 cut(s)	1408, 1856
BstXI	CCANNNNNNTGG	1 cut(s)	2378
BstYI	RGATCY	2 cut(s)	1408, 1856
Bsu15I	ATCGAT	1 cut(s)	1927
Bsu36I	CCTNAGG	2 cut(s)	1593, 2294
BsuI	GTATCC	4 cut(s)	650, 1456, 2207, 2581
BsuTUI	ATCGAT	1 cut(s)	1927
BtgI	CCRYGG	2 cut(s)	1263, 1760
BtgZI	GCGATG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	1441
BtsCI	GGATG	9 cut(s)	10, 595, 639, 796, 1101, 1225, 1398, 1740, 1756
BtsIMutI	CAGTG	5 cut(s)	65, 781, 1309, 1855, 2101
BveI	ACCTGC	2 cut(s)	1317, 2601
Cac8I	GCNNGC	6 cut(s)	107, 645, 819, 871, 1354, 1647
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	2013
CfoI	GCGC	2 cut(s)	105, 2366
Cfr10I	RCCGGY	4 cut(s)	233, 817, 869, 1645
Cfr13I	GGNCC	7 cut(s)	52, 603, 974, 1240, 1597, 2344, 2562
ClaI	ATCGAT	1 cut(s)	1927
CseI	GACGC	3 cut(s)	226, 1285, 2476
CsiI	ACCWGGT	1 cut(s)	2266
Csp6I	GTAC	4 cut(s)	983, 1553, 1798, 1937
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviQI	GTAC	4 cut(s)	983, 1553, 1798, 1937
DdeI	CTNAG	8 cut(s)	492, 1017, 1053, 1092, 1182, 1593, 2294, 2454
DpnI	GATC	6 cut(s)	65, 309, 1410, 1858, 1986, 1998
DpnII	GATC	6 cut(s)	63, 307, 1408, 1856, 1984, 1996
DraI	TTTAAA	1 cut(s)	273
DriI	GACNNNNNGTC	1 cut(s)	2560
EaeI	YGGCCR	1 cut(s)	2476
Eam1104I	CTCTTC	4 cut(s)	1248, 1419, 2124, 2169
Eam1105I	GACNNNNNGTC	1 cut(s)	2560
EarI	CTCTTC	4 cut(s)	1248, 1419, 2124, 2169
Eco130I	CCWWGG	4 cut(s)	903, 1263, 1760, 1880
Eco147I	AGGCCT	3 cut(s)	77, 298, 2452
Eco31I	GGTCTC	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	1225
Eco47I	GGWCC	5 cut(s)	52, 974, 1240, 1597, 2562
Eco57I	CTGAAG	1 cut(s)	2193
Eco81I	CCTNAGG	2 cut(s)	1593, 2294
EcoO109I	RGGNCCY	4 cut(s)	52, 603, 974, 1597
EcoRI	GAATTC	2 cut(s)	693, 847
EcoRII	CCWGG	6 cut(s)	173, 252, 851, 1158, 1451, 2266
EcoRV	GATATC	1 cut(s)	1225
EcoT14I	CCWWGG	4 cut(s)	903, 1263, 1760, 1880
EcoT22I	ATGCAT	1 cut(s)	1926
ErhI	CCWWGG	4 cut(s)	903, 1263, 1760, 1880
FalI	AAGNNNNNCTT	8 cut(s)	188, 220, 681, 713, 1190, 1222, 2057, 2089
FaqI	GGGAC	4 cut(s)	230, 987, 1742, 2548
FauI	CCCGC	2 cut(s)	578, 963
FbaI	TGATCA	1 cut(s)	1996
FblI	GTMKAC	1 cut(s)	1707
FokI	GGATG	9 cut(s)	17, 602, 646, 803, 1088, 1232, 1405, 1727, 1743
FspBI	CTAG	5 cut(s)	335, 356, 1029, 1832, 2463
GlaI	GCGC	2 cut(s)	104, 2365
GsuI	CTGGAG	3 cut(s)	41, 157, 1593
HapII	CCGG	5 cut(s)	234, 818, 870, 1646, 1726
HgaI	GACGC	3 cut(s)	226, 1285, 2476
HhaI	GCGC	2 cut(s)	105, 2366
Hin1I	GRCGYC	1 cut(s)	237
Hin6I	GCGC	2 cut(s)	103, 2364
HinP1I	GCGC	2 cut(s)	103, 2364
HincII	GTYRAC	1 cut(s)	2518
HindII	GTYRAC	1 cut(s)	2518
HindIII	AAGCTT	1 cut(s)	1150
HpaII	CCGG	5 cut(s)	234, 818, 870, 1646, 1726
HphI	GGTGA	2 cut(s)	1198, 1715
Hpy166II	GTNNAC	4 cut(s)	1708, 1798, 1975, 2518
Hpy188I	TCNGA	6 cut(s)	32, 151, 1419, 1543, 1989, 2173
Hpy188III	TCNNGA	6 cut(s)	14, 469, 1082, 1390, 2014, 2390
Hpy8I	GTNNAC	4 cut(s)	1708, 1798, 1975, 2518
Hpy99I	CGWCG	5 cut(s)	170, 186, 242, 245, 463
HpyAV	CCTTC	7 cut(s)	475, 926, 949, 1018, 1450, 1690, 2152
HpyCH4III	ACNGT	2 cut(s)	1234, 1735
HpyCH4IV	ACGT	2 cut(s)	181, 1440
HpyF3I	CTNAG	8 cut(s)	492, 1017, 1053, 1092, 1182, 1593, 2294, 2454
HpySE526I	ACGT	2 cut(s)	181, 1440
Hsp92I	GRCGYC	1 cut(s)	237
HspAI	GCGC	2 cut(s)	103, 2364
KpnI	GGTACC	1 cut(s)	1556
KroI	GCCGGC	3 cut(s)	817, 869, 1645
KroNI	GCCGGC	3 cut(s)	819, 871, 1647
Ksp22I	TGATCA	1 cut(s)	1996
Kzo9I	GATC	6 cut(s)	63, 307, 1408, 1856, 1984, 1996
LguI	GCTCTTC	1 cut(s)	2169
LmnI	GCTCC	5 cut(s)	176, 488, 572, 886, 1654
LweI	GCATC	4 cut(s)	112, 630, 1765, 1933
MabI	ACCWGGT	1 cut(s)	2266
MaeI	CTAG	5 cut(s)	335, 356, 1029, 1832, 2463
MaeII	ACGT	2 cut(s)	181, 1440
MaeIII	GTNAC	4 cut(s)	1186, 1304, 1343, 2387
MalI	GATC	6 cut(s)	65, 309, 1410, 1858, 1986, 1998
MbiI	CCGCTC	2 cut(s)	889, 1489
MboI	GATC	6 cut(s)	63, 307, 1408, 1856, 1984, 1996
MfeI	CAATTG	1 cut(s)	1532
MflI	RGATCY	2 cut(s)	1408, 1856
MlsI	TGGCCA	1 cut(s)	2478
MluNI	TGGCCA	1 cut(s)	2478
MlyI	GAGTC	2 cut(s)	1634, 2513
MmeI	TCCRAC	4 cut(s)	1218, 1767, 2040, 2135
Mox20I	TGGCCA	1 cut(s)	2478
Mph1103I	ATGCAT	1 cut(s)	1926
MroNI	GCCGGC	3 cut(s)	817, 869, 1645
MroXI	GAANNNNTTC	3 cut(s)	1041, 2069, 2178
MscI	TGGCCA	1 cut(s)	2478
MseI	TTAA	6 cut(s)	272, 747, 1659, 2004, 2108, 2211
MslI	CAYNNNNRTG	6 cut(s)	632, 737, 1232, 1848, 2187, 2376
Msp20I	TGGCCA	1 cut(s)	2478
MspA1I	CMGCKG	3 cut(s)	582, 1559, 2342
MspI	CCGG	5 cut(s)	234, 818, 870, 1646, 1726
MspR9I	CCNGG	7 cut(s)	175, 254, 853, 1160, 1453, 1727, 2268
MunI	CAATTG	1 cut(s)	1532
Mva1269I	GAATGC	1 cut(s)	1018
MvaI	CCWGG	6 cut(s)	175, 254, 853, 1160, 1453, 2268
MvnI	CGCG	1 cut(s)	105
NaeI	GCCGGC	3 cut(s)	819, 871, 1647
NciI	CCSGG	1 cut(s)	1727
NcoI	CCATGG	2 cut(s)	1263, 1760
NdeII	GATC	6 cut(s)	63, 307, 1408, 1856, 1984, 1996
NgoMIV	GCCGGC	3 cut(s)	817, 869, 1645
NmeAIII	GCCGAG	2 cut(s)	286, 964
NmuCI	GTSAC	3 cut(s)	1186, 1304, 2387
NsiI	ATGCAT	1 cut(s)	1926
NspI	RCATGY	1 cut(s)	2093
OliI	CACNNNNGTG	2 cut(s)	1232, 1848
PagI	TCATGA	1 cut(s)	2013
PceI	AGGCCT	3 cut(s)	77, 298, 2452
PciI	ACATGT	1 cut(s)	2089
PciSI	GCTCTTC	1 cut(s)	2169
PcsI	WCGNNNNNNNCGW	3 cut(s)	147, 162, 190
PctI	GAATGC	1 cut(s)	1018
PdiI	GCCGGC	3 cut(s)	819, 871, 1647
PdmI	GAANNNNTTC	3 cut(s)	1041, 2069, 2178
PfeI	GAWTC	9 cut(s)	146, 381, 405, 563, 1078, 1283, 1508, 1898, 2233
PfoI	TCCNGGA	2 cut(s)	173, 851
PleI	GAGTC	2 cut(s)	1633, 2513
PpsI	GAGTC	2 cut(s)	1633, 2513
PpuMI	RGGWCCY	3 cut(s)	52, 974, 1597
PscI	ACATGT	1 cut(s)	2089
Psp5II	RGGWCCY	3 cut(s)	52, 974, 1597
Psp6I	CCWGG	6 cut(s)	173, 252, 851, 1158, 1451, 2266
PspGI	CCWGG	6 cut(s)	173, 252, 851, 1158, 1451, 2266
PspPI	GGNCC	7 cut(s)	52, 603, 974, 1240, 1597, 2344, 2562
PspPPI	RGGWCCY	3 cut(s)	52, 974, 1597
PstI	CTGCAG	2 cut(s)	1314, 1984
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	1408, 1856
PvuII	CAGCTG	1 cut(s)	1559
RsaI	GTAC	4 cut(s)	984, 1554, 1799, 1938
RsaNI	GTAC	4 cut(s)	983, 1553, 1798, 1937
RseI	CAYNNNNRTG	6 cut(s)	632, 737, 1232, 1848, 2187, 2376
SapI	GCTCTTC	1 cut(s)	2169
SaqAI	TTAA	6 cut(s)	272, 747, 1659, 2004, 2108, 2211
Sau3AI	GATC	6 cut(s)	63, 307, 1408, 1856, 1984, 1996
Sau96I	GGNCC	7 cut(s)	52, 603, 974, 1240, 1597, 2344, 2562
SchI	GAGTC	2 cut(s)	1634, 2513
ScrFI	CCNGG	7 cut(s)	175, 254, 853, 1160, 1453, 1727, 2268
SexAI	ACCWGGT	1 cut(s)	2266
SfaNI	GCATC	4 cut(s)	112, 630, 1765, 1933
SfcI	CTRYAG	3 cut(s)	1058, 1310, 1980
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	5 cut(s)	52, 974, 1240, 1597, 2562
SmiMI	CAYNNNNRTG	6 cut(s)	632, 737, 1232, 1848, 2187, 2376
SmlI	CTYRAG	4 cut(s)	978, 1069, 2303, 2576
SmoI	CTYRAG	4 cut(s)	978, 1069, 2303, 2576
SseBI	AGGCCT	3 cut(s)	77, 298, 2452
SsiI	CCGC	8 cut(s)	91, 582, 585, 889, 970, 1489, 2200, 2342
SspI	AATATT	2 cut(s)	1272, 2284
SspMI	CTAG	5 cut(s)	335, 356, 1029, 1832, 2463
StuI	AGGCCT	3 cut(s)	77, 298, 2452
StyD4I	CCNGG	7 cut(s)	173, 252, 851, 1158, 1451, 1725, 2266
StyI	CCWWGG	4 cut(s)	903, 1263, 1760, 1880
TaaI	ACNGT	2 cut(s)	1234, 1735
TaiI	ACGT	2 cut(s)	184, 1443
TaqI	TCGA	2 cut(s)	1896, 1927
TaqII	GACCGA	2 cut(s)	534, 1257
TauI	GCSGC	2 cut(s)	585, 2345
TfiI	GAWTC	9 cut(s)	146, 381, 405, 563, 1078, 1283, 1508, 1898, 2233
Tru1I	TTAA	6 cut(s)	272, 747, 1659, 2004, 2108, 2211
Tru9I	TTAA	6 cut(s)	272, 747, 1659, 2004, 2108, 2211
TscAI	CASTG	5 cut(s)	65, 781, 1309, 1855, 2108
TseFI	GTSAC	3 cut(s)	1186, 1304, 2387
Tsp45I	GTSAC	3 cut(s)	1186, 1304, 2387
TspDTI	ATGAA	7 cut(s)	174, 536, 650, 1457, 2030, 2205, 2246
TspRI	CASTG	5 cut(s)	65, 781, 1309, 1855, 2108
VpaK11BI	GGWCC	5 cut(s)	52, 974, 1240, 1597, 2562
XapI	RAATTY	4 cut(s)	693, 847, 1006, 2353
XceI	RCATGY	1 cut(s)	2093
XcmI	CCANNNNNNNNNTGG	2 cut(s)	65, 2378
XmiI	GTMKAC	1 cut(s)	1707
XmnI	GAANNNNTTC	3 cut(s)	1041, 2069, 2178
XspI	CTAG	5 cut(s)	335, 356, 1029, 1832, 2463
Zsp2I	ATGCAT	1 cut(s)	1926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.