Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Reverse (-)

32822973 .. 32825626

Gene Structure 2654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2508 bp

ATGGATGATTATCAGGAGATGGAGAGGTTCGGAATGGAGAACGATTACGAGGACCTCCAGTGGATTGGTGGCGAGGCCTATTACCGAAACCGCAAGAGTAAGCGCGTGCAGACCAAAGACGATGCTCTCTACGGCTCGTTCGCTGATTCCGATGACGATGAAGACGACGGCTCCAGGAAACGCCGCAAAGAGCGAAGGGCCGACTTCACAAAGCCCGTCAGTTTTGTCTCCACCGGCGTCGTCGTGCCCAACCAGGAAGCCGAGAACGATTTAAAGCCGCAGAGCGATGATAGTAGGCCTGATATTGATCCTGCTGCTACTTCAGGTTCTGGTTCTGGTCTAGGCTTCAATAATTCTGGTCTAGGGTTCAATAATTCTTCTTTAGGATTGGGTAATTCTGGTGGTATAGGTTTCGGTAATACTGGTGGTTTAGGATTCAATCATTCAGTAGGCAATGATGATGAGGAAGATGACAGCAGTTTTCTGCCGTCGGCGTTCGGGAAGAAGATAAAGGAGGGAGCTGAGAGGAGACACAAGGAGAAAGAAAAGATGAAATTGCAGCAGCAGAGTAGTCGGTCTCGAAGAGATTTGGAATCTAAAGGAGCAGTCAGCGGCGGGGATGGGGATTTGGGGGCCTTTGAGAAACACACAAAAGGCATTGGGATGAAGATGCTTGCAAAAATGGGATACAAAGGAGGTGGTCTTGGGAAGAACCAGCAAGGAATTCTTGCCCCCATTGAAGCCAAGTTGAGGCCAAAAAACATGGGTATGGGTTTTAATGATTACAAGGAAACCAAACAACCCAGCGTGCAAGAATTGGATGAGGAAAAGCCCAAGAAGCAGTTGCCGGCTGCTACTGCCACCACCAAAAAGAGGAATTCCTGGAAGAAGATGGTTGCCGGCAGGACTAACAAGGAGCGGTATATATCTGCCAAGGAGTTGTTAGCCAAGAAAGAAGAAGAAGGTGCCGAGGTCTTTGTGCAGAAGGTGGTTGATATGCGGGGACCTCAAGTACGAGTTTTGACCAATTTGGAGAATTTGAATGCTGAGGAGAAGGCTAGGGAAGAAAATGTTCCTATGCCTGAGCTACAGCACAACTTGAAGTTGATTCTTGACATGGCTGAGCTTGACATCCAAAAGATTGATAGGGATTTGAGGAATGAGAGAGAGACTGCTATAAGCTTGAACCAGGAGAAAGAGAGATTGCAAGCTGAGGTGACTATGCAGAAGCAGCACTTGGATAGCTTGGATGATATCACAACTGTGTTGGACCGACTGGGAGAAGAGAAAGCCATGGGAATATTGACGCTGGATTCTCTGGCAAAGGGTTTCAGTGACCTGCAGAGGAGGATGTTTCAAGGTTGGGATCCTCTTCAGAACCCCTCTCATGGAATGGACGTGGTATCCACCTGGAAGGCTTTGCTTCACGGGGAGGGGGAGTATGAGCGGTGCCTTGATATATGGGATTCTTCAATGTCTCCTTATACCCAATTGGTTTCCGAGGTTGTGGTACCAGCTAAATTTCTGCCGGCTCCTGTTCTTAATAGCATATTGGATATGGTAGTCTTCCCCAAATTGAAGGAGGCAGTCGACTTTTGGGAACCTCACCGGGACACAGTTCCCATCCATGTCTGGGTGCATCCATGGCTACCACTATTAGGACACAAGTTGGAGGAGGTGTACCACACAATACGCTACAAGTTGAGTAATGTTCTAGGTGCATGGCACCCCAGTGATGGATCTGCTTATACGATACTCTCTCCTTGGAAAAAGGTTTTCGATTCTGCAAGTTGGGAACAGCTAATGCATCGATTTATAGTACCCAAATTGCAGCTTGTTTTGCAAGACTTCCAAGTAAACCCTGCAGATCAGAGACTTGATCAGTTTAATTGGGTCATGAGTTGGGCTTCTGCTATTCCAATTCATCTAATGGTAGATATGTTGGAGAAGTTTTTCTTCCCCAAGTGGCTACATGTTTTATATCACTGGTTAATATCAAACCCAAACTTTGAAGAGGTTTTGAATTGGTATAAAGGTTGGAAGGAACTTATATCTGAAGAGCTTCACGCAAATGAAAGTATCCGCTATCAGCTTAATTGTGGCCTTGACATGATGAATCGTGCTGTTGAGGGTATGGAGGTGGTTCAACCTGGTTTGAAAGAGAATATTAGCTACCTCAGGGTGCTTGAGCAAAGGCAATTTGAGGCACAGCAAAAAGCAGCAGCAGCCCATGCAAATTTGGGTGCCACTGCCCATATGGATGGTGGTGGTCACGAGATGACCCTGAAAGATGTTATTGAAGCCCATGCACAGCAGAATGGGTTGCTATTTAGGCCTAAGCCTACTAGGACGCATAATGGCCACCAGATATACGGGTTTGGTAATGTAAGCATAATAGTTGACTCTCTAAATCAAAAGGTGTATGCCCAAACAGAGGACACTTGGTCCCTTGTATCCCTTGAGAAGTTGCTTGACCTGCACAATACTTCTCTTACAAGAAGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

835

Amino Acids

94.67

Weight (kDa)

5.84

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP_N	PF12457	2 - 96	6.4e-21	Tuftelin interacting protein N terminal
G-patch	PF01585	217 - 258	1.4e-14	G-patch domain
GCFC	PF07842	447 - 660	1.4e-60	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1347, 2484
Acc65I	GGTACC	1 cut(s)	1510
AccB1I	GGYRCC	5 cut(s)	965, 1449, 1510, 1725, 2243
AccBSI	CCGCTC	2 cut(s)	919, 1447
AccI	GTMKAC	1 cut(s)	1590
AccII	CGCG	1 cut(s)	105
AciI	CCGC	9 cut(s)	91, 184, 278, 612, 615, 919, 1000, 1447, 2083
AclWI	GGATC	4 cut(s)	302, 1361, 1374, 1747
AcoI	YGGCCR	1 cut(s)	2359
AcsI	RAATTY	5 cut(s)	723, 877, 1036, 1520, 2236
AcuI	CTGAAG	3 cut(s)	306, 1358, 2076
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	4 cut(s)	1014, 1512, 1682, 1821
AfiI	CCNNNNNNNGG	7 cut(s)	750, 873, 1388, 1633, 1658, 1736, 2434
AflIII	ACRYGT	1 cut(s)	1972
AhdI	GACNNNNNGTC	1 cut(s)	2443
AjiI	CACGTC	1 cut(s)	1399
AjnI	CCWGG	6 cut(s)	173, 252, 881, 1188, 1409, 2149
AjuI	GAANNNNNNNTTGG	2 cut(s)	1220, 1252
AleI	CACNNNNGTG	2 cut(s)	1262, 1731
Alw26I	GTCTC	6 cut(s)	232, 523, 582, 1163, 1482, 1867
AlwI	GGATC	4 cut(s)	302, 1361, 1374, 1747
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	8 cut(s)	75, 198, 296, 633, 752, 2101, 2333, 2359
ApeKI	GCWGC	9 cut(s)	314, 559, 562, 851, 1231, 1831, 2219, 2222, 2225
ApoI	RAATTY	5 cut(s)	723, 877, 1036, 1520, 2236
Asp700I	GAANNNNTTC	3 cut(s)	1071, 1952, 2061
Asp718I	GGTACC	1 cut(s)	1510
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	6 cut(s)	52, 198, 633, 1004, 1270, 2445
AsuC2I	CCSGG	1 cut(s)	1610
AsuHPI	GGTGA	2 cut(s)	1228, 1598
AvaII	GGWCC	4 cut(s)	52, 1004, 1270, 2445
AxyI	CCTNAGG	1 cut(s)	2177
BaeGI	GKGCMC	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	2361
BamHI	GGATCC	1 cut(s)	1366
BanI	GGYRCC	5 cut(s)	965, 1449, 1510, 1725, 2243
BauI	CACGAG	1 cut(s)	2273
BbsI	GAAGAC	2 cut(s)	168, 1558
BbvCI	CCTCAGC	2 cut(s)	1047, 1212
BbvI	GCAGC	9 cut(s)	301, 571, 574, 838, 1243, 1843, 2231, 2234, 2237
BccI	CCATC	6 cut(s)	13, 614, 886, 1631, 1730, 2255
BceAI	ACGGC	3 cut(s)	148, 184, 472
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	6 cut(s)	175, 254, 883, 1190, 1411, 2151
BciVI	GTATCC	4 cut(s)	680, 1414, 2090, 2464
BclI	TGATCA	1 cut(s)	1879
BcnI	CCSGG	1 cut(s)	1610
BcoDI	GTCTC	6 cut(s)	232, 523, 582, 1163, 1482, 1867
BfaI	CTAG	5 cut(s)	341, 362, 1059, 1715, 2346
BfmI	CTRYAG	3 cut(s)	1088, 1340, 1863
BfuAI	ACCTGC	2 cut(s)	1347, 2484
BfuI	GTATCC	4 cut(s)	680, 1414, 2090, 2464
BlpI	GCTNAGC	1 cut(s)	1122
Bme1390I	CCNGG	7 cut(s)	175, 254, 883, 1190, 1411, 1610, 2151
Bme18I	GGWCC	4 cut(s)	52, 1004, 1270, 2445
BmeRI	GACNNNNNGTC	1 cut(s)	2443
BmgBI	CACGTC	1 cut(s)	1399
BmgT120I	GGNCC	6 cut(s)	52, 198, 633, 1004, 1270, 2445
BmrFI	CCNGG	7 cut(s)	175, 254, 883, 1190, 1411, 1610, 2151
BmrI	ACTGGG	2 cut(s)	1286, 1725
BmsI	GCATC	4 cut(s)	112, 660, 1648, 1816
BmuI	ACTGGG	2 cut(s)	1286, 1725
BpiI	GAAGAC	2 cut(s)	168, 1558
BpmI	CTGGAG	2 cut(s)	41, 157
Bpu10I	CCTNAGC	4 cut(s)	1047, 1083, 1212, 2337
Bpu1102I	GCTNAGC	1 cut(s)	1122
BpuEI	CTTGAG	3 cut(s)	993, 2207, 2480
BpuMI	CCSGG	1 cut(s)	1610
Bsa29I	ATCGAT	1 cut(s)	1810
BsaBI	GATNNNNATC	2 cut(s)	9, 306
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	582
BsaJI	CCNNGG	6 cut(s)	933, 969, 1293, 1500, 1643, 1763
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 185, 1424, 1454, 1664, 1694
Bsc4I	CCNNNNNNNGG	7 cut(s)	750, 873, 1388, 1633, 1658, 1736, 2434
Bse118I	RCCGGY	4 cut(s)	233, 847, 899, 1528
Bse1I	ACTGG	5 cut(s)	58, 427, 1281, 1731, 1991
Bse21I	CCTNAGG	1 cut(s)	2177
Bse3DI	GCAATG	1 cut(s)	460
Bse8I	GATNNNNATC	2 cut(s)	9, 306
BseBI	CCWGG	6 cut(s)	175, 254, 883, 1190, 1411, 2151
BseCI	ATCGAT	1 cut(s)	1810
BseDI	CCNNGG	6 cut(s)	933, 969, 1293, 1500, 1643, 1763
BseJI	GATNNNNATC	2 cut(s)	9, 306
BseLI	CCNNNNNNNGG	7 cut(s)	750, 873, 1388, 1633, 1658, 1736, 2434
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	6 cut(s)	513, 1038, 1074, 1113, 1203, 2191
BseNI	ACTGG	5 cut(s)	58, 427, 1281, 1731, 1991
BseRI	GAGGAG	4 cut(s)	541, 1064, 1360, 1688
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	9 cut(s)	301, 571, 574, 838, 1243, 1843, 2231, 2234, 2237
BseYI	CCCAGC	1 cut(s)	803
BsgI	GTGCAG	3 cut(s)	128, 1001, 2462
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	8 cut(s)	77, 200, 298, 635, 754, 2103, 2335, 2361
BshNI	GGYRCC	5 cut(s)	965, 1449, 1510, 1725, 2243
BshVI	ATCGAT	1 cut(s)	1810
BsiSI	CCGG	5 cut(s)	234, 848, 900, 1529, 1609
BslFI	GGGAC	3 cut(s)	1017, 1625, 2431
BslI	CCNNNNNNNGG	7 cut(s)	750, 873, 1388, 1633, 1658, 1736, 2434
BsmAI	GTCTC	6 cut(s)	232, 523, 582, 1163, 1482, 1867
BsmFI	GGGAC	3 cut(s)	1017, 1625, 2431
BsmI	GAATGC	1 cut(s)	1048
BsnI	GGCC	8 cut(s)	77, 200, 298, 635, 754, 2103, 2335, 2361
Bso31I	GGTCTC	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	5 cut(s)	307, 1366, 1739, 1867, 1879
Bsp1720I	GCTNAGC	1 cut(s)	1122
Bsp19I	CCATGG	2 cut(s)	1293, 1643
BspACI	CCGC	9 cut(s)	91, 184, 278, 612, 615, 919, 1000, 1447, 2083
BspANI	GGCC	8 cut(s)	77, 200, 298, 635, 754, 2103, 2335, 2361
BspCNI	CTCAG	6 cut(s)	514, 1039, 1075, 1114, 1204, 2190
BspDI	ATCGAT	1 cut(s)	1810
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	1896
BspMAI	CTGCAG	2 cut(s)	1344, 1867
BspMI	ACCTGC	2 cut(s)	1347, 2484
BspPI	GGATC	4 cut(s)	302, 1361, 1374, 1747
BspQI	GCTCTTC	1 cut(s)	2052
BspT107I	GGYRCC	5 cut(s)	965, 1449, 1510, 1725, 2243
BspTNI	GGTCTC	1 cut(s)	582
BsrBI	CCGCTC	2 cut(s)	919, 1447
BsrDI	GCAATG	1 cut(s)	460
BsrFI	RCCGGY	4 cut(s)	233, 847, 899, 1528
BsrI	ACTGG	5 cut(s)	58, 427, 1281, 1731, 1991
BssAI	RCCGGY	4 cut(s)	233, 847, 899, 1528
BssECI	CCNNGG	6 cut(s)	933, 969, 1293, 1500, 1643, 1763
BssMI	GATC	5 cut(s)	307, 1366, 1739, 1867, 1879
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	2273
BssT1I	CCWWGG	4 cut(s)	933, 1293, 1643, 1763
Bst2BI	CACGAG	1 cut(s)	2273
Bst2UI	CCWGG	6 cut(s)	175, 254, 883, 1190, 1411, 2151
Bst4CI	ACNGT	2 cut(s)	1264, 1618
Bst6I	CTCTTC	5 cut(s)	577, 1278, 1377, 2007, 2052
BstACI	GRCGYC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	2231
BstC8I	GCNNGC	7 cut(s)	107, 675, 809, 849, 901, 1209, 1530
BstDEI	CTNAG	7 cut(s)	522, 1047, 1083, 1122, 1212, 2177, 2337
BstDSI	CCRYGG	2 cut(s)	1293, 1643
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	5 cut(s)	310, 1369, 1742, 1870, 1882
BstMAI	GTCTC	6 cut(s)	232, 523, 582, 1163, 1482, 1867
BstMBI	GATC	5 cut(s)	307, 1366, 1739, 1867, 1879
BstMWI	GCNNNNNNNGC	9 cut(s)	838, 857, 1231, 1645, 1840, 2225, 2231, 2332, 2476
BstNI	CCWGG	6 cut(s)	175, 254, 883, 1190, 1411, 2151
BstNSI	RCATGY	1 cut(s)	1976
BstSCI	CCNGG	7 cut(s)	173, 252, 881, 1188, 1409, 1608, 2149
BstSFI	CTRYAG	3 cut(s)	1088, 1340, 1863
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	9 cut(s)	301, 571, 574, 838, 1243, 1843, 2231, 2234, 2237
BstV2I	GAAGAC	2 cut(s)	168, 1558
BstX2I	RGATCY	2 cut(s)	1366, 1739
BstXI	CCANNNNNNTGG	2 cut(s)	65, 2261
BstYI	RGATCY	2 cut(s)	1366, 1739
Bsu15I	ATCGAT	1 cut(s)	1810
Bsu36I	CCTNAGG	1 cut(s)	2177
BsuI	GTATCC	4 cut(s)	680, 1414, 2090, 2464
BsuRI	GGCC	8 cut(s)	77, 200, 298, 635, 754, 2103, 2335, 2361
BsuTUI	ATCGAT	1 cut(s)	1810
BtgI	CCRYGG	2 cut(s)	1293, 1643
BtgZI	GCGATG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	1399
BtsI	GCAGTG	1 cut(s)	2247
BtsIMutI	CAGTG	5 cut(s)	65, 1339, 1738, 1984, 2247
BveI	ACCTGC	2 cut(s)	1347, 2484
Cac8I	GCNNGC	7 cut(s)	107, 675, 809, 849, 901, 1209, 1530
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	1896
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	4 cut(s)	233, 847, 899, 1528
Cfr13I	GGNCC	6 cut(s)	52, 198, 633, 1004, 1270, 2445
ClaI	ATCGAT	1 cut(s)	1810
CseI	GACGC	3 cut(s)	226, 1315, 2359
CsiI	ACCWGGT	1 cut(s)	2149
Csp6I	GTAC	4 cut(s)	1013, 1511, 1681, 1820
CspCI	CAANNNNNGTGG	2 cut(s)	679, 714
CviQI	GTAC	4 cut(s)	1013, 1511, 1681, 1820
DdeI	CTNAG	7 cut(s)	522, 1047, 1083, 1122, 1212, 2177, 2337
DpnI	GATC	5 cut(s)	309, 1368, 1741, 1869, 1881
DpnII	GATC	5 cut(s)	307, 1366, 1739, 1867, 1879
DraI	TTTAAA	1 cut(s)	273
DriI	GACNNNNNGTC	1 cut(s)	2443
EaeI	YGGCCR	1 cut(s)	2359
Eam1104I	CTCTTC	5 cut(s)	577, 1278, 1377, 2007, 2052
Eam1105I	GACNNNNNGTC	1 cut(s)	2443
EarI	CTCTTC	5 cut(s)	577, 1278, 1377, 2007, 2052
Eco130I	CCWWGG	4 cut(s)	933, 1293, 1643, 1763
Eco147I	AGGCCT	3 cut(s)	77, 298, 2335
Eco31I	GGTCTC	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	1255
Eco47I	GGWCC	4 cut(s)	52, 1004, 1270, 2445
Eco57I	CTGAAG	3 cut(s)	306, 1358, 2076
Eco81I	CCTNAGG	1 cut(s)	2177
EcoO109I	RGGNCCY	3 cut(s)	52, 633, 1004
EcoRI	GAATTC	2 cut(s)	723, 877
EcoRII	CCWGG	6 cut(s)	173, 252, 881, 1188, 1409, 2149
EcoRV	GATATC	1 cut(s)	1255
EcoT14I	CCWWGG	4 cut(s)	933, 1293, 1643, 1763
EcoT22I	ATGCAT	1 cut(s)	1809
ErhI	CCWWGG	4 cut(s)	933, 1293, 1643, 1763
FalI	AAGNNNNNCTT	6 cut(s)	711, 743, 1220, 1252, 1940, 1972
FaqI	GGGAC	3 cut(s)	1017, 1625, 2431
FauI	CCCGC	2 cut(s)	608, 993
FauNDI	CATATG	1 cut(s)	2256
FbaI	TGATCA	1 cut(s)	1879
FblI	GTMKAC	1 cut(s)	1590
FspBI	CTAG	5 cut(s)	341, 362, 1059, 1715, 2346
GlaI	GCGC	1 cut(s)	104
GsaI	CCCAGC	1 cut(s)	807
GsuI	CTGGAG	2 cut(s)	41, 157
HaeIII	GGCC	8 cut(s)	77, 200, 298, 635, 754, 2103, 2335, 2361
HapII	CCGG	5 cut(s)	234, 848, 900, 1529, 1609
HgaI	GACGC	3 cut(s)	226, 1315, 2359
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	237
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	2 cut(s)	1591, 2401
HindII	GTYRAC	2 cut(s)	1591, 2401
HindIII	AAGCTT	1 cut(s)	1180
HinfI	GANTC	9 cut(s)	146, 435, 593, 1108, 1313, 1466, 1781, 2116, 2402
HpaII	CCGG	5 cut(s)	234, 848, 900, 1529, 1609
HphI	GGTGA	2 cut(s)	1228, 1598
Hpy166II	GTNNAC	4 cut(s)	1591, 1681, 1858, 2401
Hpy188I	TCNGA	6 cut(s)	32, 151, 1377, 1501, 1872, 2056
Hpy188III	TCNNGA	6 cut(s)	14, 499, 579, 1112, 1897, 2273
Hpy8I	GTNNAC	4 cut(s)	1591, 1681, 1858, 2401
Hpy99I	CGWCG	4 cut(s)	170, 242, 245, 493
HpyAV	CCTTC	7 cut(s)	189, 956, 979, 1048, 1408, 1573, 2035
HpyCH4III	ACNGT	2 cut(s)	1264, 1618
HpyCH4IV	ACGT	1 cut(s)	1398
HpyF10VI	GCNNNNNNNGC	9 cut(s)	838, 857, 1231, 1645, 1840, 2225, 2231, 2332, 2476
HpyF3I	CTNAG	7 cut(s)	522, 1047, 1083, 1122, 1212, 2177, 2337
HpySE526I	ACGT	1 cut(s)	1398
Hsp92I	GRCGYC	1 cut(s)	237
HspAI	GCGC	1 cut(s)	103
KpnI	GGTACC	1 cut(s)	1514
KroI	GCCGGC	3 cut(s)	847, 899, 1528
KroNI	GCCGGC	3 cut(s)	849, 901, 1530
Ksp22I	TGATCA	1 cut(s)	1879
Kzo9I	GATC	5 cut(s)	307, 1366, 1739, 1867, 1879
LguI	GCTCTTC	1 cut(s)	2052
LmnI	GCTCC	5 cut(s)	176, 518, 602, 916, 1537
Lsp1109I	GCAGC	9 cut(s)	301, 571, 574, 838, 1243, 1843, 2231, 2234, 2237
LweI	GCATC	4 cut(s)	112, 660, 1648, 1816
MabI	ACCWGGT	1 cut(s)	2149
MaeI	CTAG	5 cut(s)	341, 362, 1059, 1715, 2346
MaeII	ACGT	1 cut(s)	1398
MaeIII	GTNAC	3 cut(s)	1216, 1334, 2270
MalI	GATC	5 cut(s)	309, 1368, 1741, 1869, 1881
MbiI	CCGCTC	2 cut(s)	919, 1447
MboI	GATC	5 cut(s)	307, 1366, 1739, 1867, 1879
MfeI	CAATTG	1 cut(s)	1490
MflI	RGATCY	2 cut(s)	1366, 1739
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	2361
MluNI	TGGCCA	1 cut(s)	2361
MlyI	GAGTC	1 cut(s)	2396
MmeI	TCCRAC	4 cut(s)	1248, 1650, 1923, 2018
Mox20I	TGGCCA	1 cut(s)	2361
Mph1103I	ATGCAT	1 cut(s)	1809
MroNI	GCCGGC	3 cut(s)	847, 899, 1528
MroXI	GAANNNNTTC	3 cut(s)	1071, 1952, 2061
MscI	TGGCCA	1 cut(s)	2361
MseI	TTAA	6 cut(s)	272, 777, 1542, 1887, 1991, 2094
MslI	CAYNNNNRTG	6 cut(s)	662, 767, 1262, 1731, 2070, 2259
Msp20I	TGGCCA	1 cut(s)	2361
MspA1I	CMGCKG	1 cut(s)	612
MspI	CCGG	5 cut(s)	234, 848, 900, 1529, 1609
MspR9I	CCNGG	7 cut(s)	175, 254, 883, 1190, 1411, 1610, 2151
MunI	CAATTG	1 cut(s)	1490
Mva1269I	GAATGC	1 cut(s)	1048
MvaI	CCWGG	6 cut(s)	175, 254, 883, 1190, 1411, 2151
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	9 cut(s)	838, 857, 1231, 1645, 1840, 2225, 2231, 2332, 2476
NaeI	GCCGGC	3 cut(s)	849, 901, 1530
NciI	CCSGG	1 cut(s)	1610
NcoI	CCATGG	2 cut(s)	1293, 1643
NdeI	CATATG	1 cut(s)	2256
NdeII	GATC	5 cut(s)	307, 1366, 1739, 1867, 1879
NgoMIV	GCCGGC	3 cut(s)	847, 899, 1528
NmeAIII	GCCGAG	2 cut(s)	286, 994
NmuCI	GTSAC	3 cut(s)	1216, 1334, 2270
NsiI	ATGCAT	1 cut(s)	1809
NspI	RCATGY	1 cut(s)	1976
OliI	CACNNNNGTG	2 cut(s)	1262, 1731
PagI	TCATGA	1 cut(s)	1896
PceI	AGGCCT	3 cut(s)	77, 298, 2335
PciI	ACATGT	1 cut(s)	1972
PciSI	GCTCTTC	1 cut(s)	2052
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 162
PctI	GAATGC	1 cut(s)	1048
PdiI	GCCGGC	3 cut(s)	849, 901, 1530
PdmI	GAANNNNTTC	3 cut(s)	1071, 1952, 2061
PfeI	GAWTC	8 cut(s)	146, 435, 593, 1108, 1313, 1466, 1781, 2116
PfoI	TCCNGGA	2 cut(s)	173, 881
PleI	GAGTC	1 cut(s)	2396
PpsI	GAGTC	1 cut(s)	2396
PpuMI	RGGWCCY	2 cut(s)	52, 1004
PscI	ACATGT	1 cut(s)	1972
Psp5II	RGGWCCY	2 cut(s)	52, 1004
Psp6I	CCWGG	6 cut(s)	173, 252, 881, 1188, 1409, 2149
PspFI	CCCAGC	1 cut(s)	803
PspGI	CCWGG	6 cut(s)	173, 252, 881, 1188, 1409, 2149
PspPI	GGNCC	6 cut(s)	52, 198, 633, 1004, 1270, 2445
PspPPI	RGGWCCY	2 cut(s)	52, 1004
PstI	CTGCAG	2 cut(s)	1344, 1867
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	1366, 1739
RsaI	GTAC	4 cut(s)	1014, 1512, 1682, 1821
RsaNI	GTAC	4 cut(s)	1013, 1511, 1681, 1820
RseI	CAYNNNNRTG	6 cut(s)	662, 767, 1262, 1731, 2070, 2259
SalI	GTCGAC	1 cut(s)	1589
SapI	GCTCTTC	1 cut(s)	2052
SaqAI	TTAA	6 cut(s)	272, 777, 1542, 1887, 1991, 2094
Sau3AI	GATC	5 cut(s)	307, 1366, 1739, 1867, 1879
Sau96I	GGNCC	6 cut(s)	52, 198, 633, 1004, 1270, 2445
SchI	GAGTC	1 cut(s)	2396
ScrFI	CCNGG	7 cut(s)	175, 254, 883, 1190, 1411, 1610, 2151
SduI	GDGCHC	1 cut(s)	249
SexAI	ACCWGGT	1 cut(s)	2149
SfaNI	GCATC	4 cut(s)	112, 660, 1648, 1816
SfcI	CTRYAG	3 cut(s)	1088, 1340, 1863
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	4 cut(s)	52, 1004, 1270, 2445
SmiMI	CAYNNNNRTG	6 cut(s)	662, 767, 1262, 1731, 2070, 2259
SmlI	CTYRAG	3 cut(s)	1008, 2186, 2459
SmoI	CTYRAG	3 cut(s)	1008, 2186, 2459
SseBI	AGGCCT	3 cut(s)	77, 298, 2335
SsiI	CCGC	9 cut(s)	91, 184, 278, 612, 615, 919, 1000, 1447, 2083
SspI	AATATT	2 cut(s)	1302, 2167
SspMI	CTAG	5 cut(s)	341, 362, 1059, 1715, 2346
StuI	AGGCCT	3 cut(s)	77, 298, 2335
StyD4I	CCNGG	7 cut(s)	173, 252, 881, 1188, 1409, 1608, 2149
StyI	CCWWGG	4 cut(s)	933, 1293, 1643, 1763
TaaI	ACNGT	2 cut(s)	1264, 1618
TaiI	ACGT	1 cut(s)	1401
TaqI	TCGA	4 cut(s)	580, 1590, 1779, 1810
TaqII	GACCGA	2 cut(s)	564, 1287
TauI	GCSGC	3 cut(s)	186, 280, 615
TfiI	GAWTC	8 cut(s)	146, 435, 593, 1108, 1313, 1466, 1781, 2116
Tru1I	TTAA	6 cut(s)	272, 777, 1542, 1887, 1991, 2094
Tru9I	TTAA	6 cut(s)	272, 777, 1542, 1887, 1991, 2094
TscAI	CASTG	5 cut(s)	65, 1339, 1738, 1991, 2254
TseFI	GTSAC	3 cut(s)	1216, 1334, 2270
TseI	GCWGC	9 cut(s)	314, 559, 562, 851, 1231, 1831, 2219, 2222, 2225
Tsp45I	GTSAC	3 cut(s)	1216, 1334, 2270
TspDTI	ATGAA	6 cut(s)	174, 566, 680, 1913, 2088, 2129
TspRI	CASTG	5 cut(s)	65, 1339, 1738, 1991, 2254
VpaK11BI	GGWCC	4 cut(s)	52, 1004, 1270, 2445
XapI	RAATTY	5 cut(s)	723, 877, 1036, 1520, 2236
XceI	RCATGY	1 cut(s)	1976
XcmI	CCANNNNNNNNNTGG	3 cut(s)	65, 2254, 2261
XmiI	GTMKAC	1 cut(s)	1590
XmnI	GAANNNNTTC	3 cut(s)	1071, 1952, 2061
XspI	CTAG	5 cut(s)	341, 362, 1059, 1715, 2346
Zsp2I	ATGCAT	1 cut(s)	1809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.