Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002460

Physical Location & Seq

Genomic Coordinates Reverse (-)

14761412 .. 14763805

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00175120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2394 bp

ATGGAGAGGTTTGGAATGGAGAACGATTACGAGGACGGCCAATGGATCGACGGCGAGTTCTTCTACAGTAAGCGCAAGGAGAGACGCGTACAGTCCAAAGACGATGCCCTGTACGGCTACTCCGATGAAGAAGATGAAGAATATTCAGACGGATCCAGAAAACGCAGGAAGAAAGATCGCTACGTTGACTGCACCAAGCCCATTAAATTTGTCTCCACTGAAAAGCAGGACAACAATTCCGATCAGAAGAAAACTGATCATGGCACTCCTGTCATTGGCTTTAACTCGACTGGCATGCGCGATGAAGCTAAAGATGATGATGGTGATGGTGATGGTTTTCTGGCGACAGAGTTTGGGAGGAAGATAAAGGACGGAGCTGAGAGGAGACGTAAGAAGAAGGAAAAGCTGAAATTCAAGAATGAGATTCGAAAATGTGATGGAGATGAAGGAGGCATTGGGGATTTCGAGAAACACACCAAGGGCATAGGAAGGAAGATGTTTGAGAAGATGGGGTACACAGGAGGTGGACTCGGGAAGAATCAGCAAGTCATTGTGAGTCCTATTGAGGTAAAGTTGAGGCCGAAAAATATGGGCATGGGTTTCAATGACTACAAGGAAACAGAAACCAAGCTCCAGAATTTGCAAGAAGACAAACCTAACAAGCCTACAACCTTAAAACAGAAGCCTTCTTGGAAGAAGAAGAGGACTAGCAAGGAGCATTATCTCTCTGCCGAGGAGTTTATAGCCAAGAAGCAGGAAGAGAGTGATTCCAATCTTTTTGTTCACAATGTCAATGATATGCGCGGACCTCAAGTTCGAGTGTTGAGCAATTTGGACGATTTGAATGAGCGAGAGGAAGATAGAGGAGATGAAGGTGCTTTCATGCCGGAGCTACAGCACAATTTGAAGTTGCTTGTGGACTTGGCTGAGCTCGATATCATGAAACTTGATAGGGAATTGAGGTATGAGAGGGATGCAGTAATTAGATTGAAGAATGAGAAAGAGAGGTTGGAGCTTGAGGAGGCGAGGCAGAAGCAACATTTGGATAGTATGGAGAGTATTCAGACTGTGTTGGACCAACTGGAGGAAGAGAAATCCATGGGAACATTGACGCTGGACTCGCTTGCAAATAGCTTTGGTGAGCTCAAGAGACGGTATGCAGATGAGTATAAGTTGTCTAAGTTGTCATGCATTGCTTGTTCCTTTGCTCTGCCTTTGTTTATGAGTACTATCCAAGGTTGGGATGCACTGCAGTATCCTTTGTATGGCTTGGATGTCGTGTCCTCCTGGAAGGCTTTGCTTCATGGAGAGGGAAACGAGTGTTCAATATCATCGCCTTATGCGCAGTTGGTTTTTGAGATTGTGAGGATTTCTGGTGCAGATAATTGGCAGGCCAAGGATCCTGAACCCATGCTTCGGTTTTTAGAGGCTTGGGAGAAGCTGCTGCCCCCTTGTGTCCTTAATGACATATTGGATCATTTAGTGTTTCCTAAGTTGAAGGATGCAGTTGGTGTTTGGGAACCATGCCGCGACACTCTTCCCATCCATGTATGGGTGCATCCATGGCTACCATTAATGGGACACAGATTGGAGGAGTTGTATCCGACTATACATTTCAAGTTGGGTAATGTTCTCAGTGCTTGGCTCCCAAGCAACGCGTCTGCTTATGCCATACTCTCGCCGTGGAAGAATGTATTTGATTCTGCAAGTTGGAAACAACTTATGCATAGGTTCATAGTTCCCAAGTTGCAGCTTGTCCTAGAAGAGTTCCATGTGAACCCTGCAAATCAGATTGTTGATCAGTTCAATTGGGTCATGAGGTGGGCTTATGTTATTCCCAGTCATATGATAGCCGATCTGATGGTGAAGTTTTTCTTCCCCAAATGGATAACCGTCTTGTTTTACTGGCTGAAATCAAACCCCAACTTTGAAGAGATTTTGCATTGGTACAAGGGTTGGAAAGAAGTCATTCCAGAGGAGCTTCAAGCAAATGAAAGCATCCGCCTTCAGCTCAATTGGGGTCTTGACATGATGAACCGGGCCGTTGAGGGTAGGGACTTAGTTGAACCTTGCCATGTGGAGCAAAGACAATCCGATTTTGAGGCACAGAAAAAAGCAGCAGCAGCAGCAAACCAAGCAAACTCCAATGAGACAATGATGAGCTTGAGAGATGTGATCGAAGCCTTTGCGCAGCAGCACGGCTTGCTATTTAAGCCTAAACCCGAGAGGAGGCAAGACGGTTACCAGATATATGCATTTGGTTATGTAAACATCATAGTGGACTCTGTCAATCAAAAGGTGTATGCCCGGAAACCAAGAGAGGAAGCTTGGTCCCTCGTAGACCTTGCAACATTGCTTGACATGCACAATAGCTCTCTTGCAAGGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

797

Amino Acids

92.66

Weight (kDa)

5.88

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP_N	PF12457	1 - 88	1.3e-13	Tuftelin interacting protein N terminal
G-patch	PF01585	159 - 200	3.6e-11	G-patch domain
GCFC	PF07842	372 - 633	8.5e-81	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17070
fragaria_vesca	FvH4_2g25582 FvH4_5g27320
malus_domestica	MD08G1250100.v1.1 MD15G1445100.v1.1
prunus_persica	Prupe.1G587200_v2.0.a1 Prupe.5G048700_v2.0.a1
pyrus_communis	pycom08g21680 pycom15g39220
rosa_chinensis	RchiOBHm_Chr6g0293801 RchiOBHm_Chr6g0293811 RchiOBHm_Chr7g0218481
rosa_laevigata	RLG00000002370 RLG00000011921 RLG00000012034
rosa_multiflora	Rmu_co8485319.1_g000001 Rmu_sc0001301.1_g000062 Rmu_sc0001301.1_g000063 Rmu_sc0001354.1_g000013 Rmu_sc0023058.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240910 Rroxscaffold_7G00173890 Rroxscaffold_7G00175120
rosa_rugosa	Rorug06G0238200 Rorug07G0177400
rosa_samantha	Rh6AG339400 Rh6AG351600 Rh6BG346700 Rh6BG358400 Rh6CG353500 Rh6CG365600 Rh6DG339500 Rh6DG352200 Rh6DG352300 Rh7AG318900 Rh7BG310800 Rh7CG335800 Rh7DG318000
rosa_wichuraiana	Rw6G029540 Rw6G030580 Rw7G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1344, 2190
AccI	GTMKAC	1 cut(s)	2340
AccII	CGCG	5 cut(s)	87, 300, 804, 1530, 1658
AciI	CCGC	3 cut(s)	804, 1528, 2002
AclWI	GGATC	6 cut(s)	53, 147, 160, 1394, 1407, 1482
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	206, 410, 637
AcuI	CTGAAG	1 cut(s)	1991
AfaI	GTAC	5 cut(s)	90, 113, 515, 1228, 1949
AfiI	CCNNNNNNNGG	8 cut(s)	275, 1084, 1240, 1265, 1416, 1552, 1577, 2229
AflIII	ACRYGT	2 cut(s)	85, 1656
AjnI	CCWGG	1 cut(s)	1286
AjuI	GAANNNNNNNTTGG	6 cut(s)	438, 470, 992, 1024, 1025, 1057
AloI	GAACNNNNNNTCC	2 cut(s)	798, 830
Alw21I	GWGCWC	2 cut(s)	933, 1146
Alw26I	GTCTC	5 cut(s)	76, 217, 379, 1144, 2144
AlwI	GGATC	6 cut(s)	53, 147, 160, 1394, 1407, 1482
Ama87I	CYCGRG	2 cut(s)	530, 2222
AoxI	GGCC	4 cut(s)	37, 578, 1392, 2040
ApeKI	GCWGC	9 cut(s)	1441, 1444, 1750, 2117, 2120, 2123, 2126, 2191, 2194
ApoI	RAATTY	3 cut(s)	206, 410, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	798, 830
AseI	ATTAAT	1 cut(s)	1574
Asp700I	GAANNNNTTC	2 cut(s)	1871, 1968
AspLEI	GCGC	5 cut(s)	75, 300, 804, 1345, 2191
AspS9I	GGNCC	4 cut(s)	806, 1075, 2040, 2331
AsuC2I	CCSGG	2 cut(s)	2039, 2308
AsuHPI	GGTGA	4 cut(s)	335, 341, 1151, 1876
AsuII	TTCGAA	1 cut(s)	427
AvaI	CYCGRG	2 cut(s)	530, 2222
AvaII	GGWCC	3 cut(s)	806, 1075, 2331
BaeI	ACNNNNGTAYC	4 cut(s)	1238, 1271, 1939, 1972
BamHI	GGATCC	2 cut(s)	152, 1399
BanII	GRGCYC	2 cut(s)	933, 1146
BarI	GAAGNNNNNNTAC	2 cut(s)	497, 529
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	2 cut(s)	933, 1146
BbvI	GCAGC	9 cut(s)	1428, 1431, 1762, 2129, 2132, 2135, 2138, 2203, 2206
BccI	CCATC	7 cut(s)	314, 320, 326, 431, 502, 1550, 1855
BceAI	ACGGC	6 cut(s)	52, 67, 130, 1666, 2027, 2215
BcgI	CGANNNNNNTGC	4 cut(s)	277, 311, 2168, 2202
BciT130I	CCWGG	1 cut(s)	1288
BciVI	GTATCC	2 cut(s)	1266, 1611
BclI	TGATCA	2 cut(s)	256, 1798
BcnI	CCSGG	2 cut(s)	2039, 2308
BcoDI	GTCTC	5 cut(s)	76, 217, 379, 1144, 2144
BfaI	CTAG	2 cut(s)	708, 1760
BfmI	CTRYAG	3 cut(s)	64, 893, 1250
BfuI	GTATCC	2 cut(s)	1266, 1611
BlpI	GCTNAGC	1 cut(s)	927
BmcAI	AGTACT	1 cut(s)	1228
Bme1390I	CCNGG	3 cut(s)	1288, 2039, 2308
Bme18I	GGWCC	3 cut(s)	806, 1075, 2331
BmeT110I	CYCGRG	2 cut(s)	530, 2222
BmgT120I	GGNCC	4 cut(s)	806, 1075, 2040, 2331
BmiI	GGNNCC	5 cut(s)	154, 1401, 1521, 1646, 2333
BmrFI	CCNGG	3 cut(s)	1288, 2039, 2308
BmrI	ACTGGG	1 cut(s)	1833
BmsI	GCATC	6 cut(s)	94, 964, 1234, 1492, 1567, 2007
BmuI	ACTGGG	1 cut(s)	1833
BpiI	GAAGAC	1 cut(s)	654
BplI	GAGNNNNNCTC	2 cut(s)	513, 545
BpmI	CTGGAG	2 cut(s)	617, 1103
Bpu1102I	GCTNAGC	1 cut(s)	927
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	4 cut(s)	795, 1037, 1130, 2185
BpuMI	CCSGG	2 cut(s)	2039, 2308
BsaBI	GATNNNNATC	1 cut(s)	771
BsaJI	CCNNGG	7 cut(s)	477, 732, 1098, 1234, 1395, 1562, 1682
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 1583, 1613
Bsc4I	CCNNNNNNNGG	8 cut(s)	275, 1084, 1240, 1265, 1416, 1552, 1577, 2229
Bse1I	ACTGG	4 cut(s)	295, 1086, 1839, 1910
Bse3DI	GCAATG	2 cut(s)	1191, 2351
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	1288
BseDI	CCNNGG	7 cut(s)	477, 732, 1098, 1234, 1395, 1562, 1682
BseGI	GGATG	7 cut(s)	979, 1249, 1279, 1507, 1542, 1558, 1998
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	8 cut(s)	275, 1084, 1240, 1265, 1416, 1552, 1577, 2229
BseMI	GCAATG	2 cut(s)	1191, 2351
BseMII	CTCAG	3 cut(s)	369, 918, 1648
BseNI	ACTGG	4 cut(s)	295, 1086, 1839, 1910
BseRI	GAGGAG	7 cut(s)	397, 749, 879, 1034, 1607, 1991, 2242
BseXI	GCAGC	9 cut(s)	1428, 1431, 1762, 2129, 2132, 2135, 2138, 2203, 2206
BsgI	GTGCAG	2 cut(s)	175, 1398
Bsh1236I	CGCG	5 cut(s)	87, 300, 804, 1530, 1658
BshFI	GGCC	4 cut(s)	39, 580, 1394, 2042
BsiHKAI	GWGCWC	2 cut(s)	933, 1146
BsiHKCI	CYCGRG	2 cut(s)	530, 2222
BsiSI	CCGG	3 cut(s)	887, 2038, 2308
BslFI	GGGAC	3 cut(s)	1593, 2069, 2317
BslI	CCNNNNNNNGG	8 cut(s)	275, 1084, 1240, 1265, 1416, 1552, 1577, 2229
BsmAI	GTCTC	5 cut(s)	76, 217, 379, 1144, 2144
BsmBI	CGTCTC	3 cut(s)	76, 379, 1144
BsmFI	GGGAC	3 cut(s)	1593, 2069, 2317
BsnI	GGCC	4 cut(s)	39, 580, 1394, 2042
BsoBI	CYCGRG	2 cut(s)	530, 2222
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	933, 1146
Bsp1720I	GCTNAGC	1 cut(s)	927
Bsp19I	CCATGG	2 cut(s)	1098, 1562
BspACI	CCGC	3 cut(s)	804, 1528, 2002
BspANI	GGCC	4 cut(s)	39, 580, 1394, 2042
BspCNI	CTCAG	3 cut(s)	370, 919, 1647
BspFNI	CGCG	5 cut(s)	87, 300, 804, 1530, 1658
BspHI	TCATGA	2 cut(s)	939, 1815
BspLI	GGNNCC	5 cut(s)	154, 1401, 1521, 1646, 2333
BspMAI	CTGCAG	1 cut(s)	1254
BspPI	GGATC	6 cut(s)	53, 147, 160, 1394, 1407, 1482
BspT104I	TTCGAA	1 cut(s)	427
BsrDI	GCAATG	2 cut(s)	1191, 2351
BsrI	ACTGG	4 cut(s)	295, 1086, 1839, 1910
BssECI	CCNNGG	7 cut(s)	477, 732, 1098, 1234, 1395, 1562, 1682
BssT1I	CCWWGG	5 cut(s)	477, 1098, 1234, 1395, 1562
Bst2UI	CCWGG	1 cut(s)	1288
Bst4CI	ACNGT	6 cut(s)	68, 93, 1069, 1155, 1894, 2240
Bst6I	CTCTTC	6 cut(s)	695, 753, 1083, 1542, 1758, 1926
BstAPI	GCANNNNNTGC	1 cut(s)	2203
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	4 cut(s)	296, 1125, 1392, 2204
BstDEI	CTNAG	6 cut(s)	378, 927, 1179, 1491, 1634, 2059
BstDSI	CCRYGG	3 cut(s)	1098, 1562, 1682
BstEII	GGTNACC	1 cut(s)	2240
BstF5I	GGATG	7 cut(s)	979, 1249, 1279, 1507, 1542, 1558, 1998
BstFNI	CGCG	5 cut(s)	87, 300, 804, 1530, 1658
BstHHI	GCGC	5 cut(s)	75, 300, 804, 1345, 2191
BstMAI	GTCTC	5 cut(s)	76, 217, 379, 1144, 2144
BstMWI	GCNNNNNNNGC	9 cut(s)	1120, 1342, 1564, 2123, 2126, 2135, 2203, 2212, 2362
BstNI	CCWGG	1 cut(s)	1288
BstNSI	RCATGY	2 cut(s)	298, 2365
BstPI	GGTNACC	1 cut(s)	2240
BstSCI	CCNGG	3 cut(s)	1286, 2037, 2306
BstSFI	CTRYAG	3 cut(s)	64, 893, 1250
BstUI	CGCG	5 cut(s)	87, 300, 804, 1530, 1658
BstV1I	GCAGC	9 cut(s)	1428, 1431, 1762, 2129, 2132, 2135, 2138, 2203, 2206
BstV2I	GAAGAC	1 cut(s)	654
BstX2I	RGATCY	2 cut(s)	152, 1399
BstYI	RGATCY	2 cut(s)	152, 1399
BsuI	GTATCC	2 cut(s)	1266, 1611
BsuRI	GGCC	4 cut(s)	39, 580, 1394, 2042
BtgI	CCRYGG	3 cut(s)	1098, 1562, 1682
BtgZI	GCGATG	2 cut(s)	315, 1317
BtsCI	GGATG	7 cut(s)	979, 1249, 1279, 1507, 1542, 1558, 1998
BtsI	GCAGTG	1 cut(s)	1247
BtsIMutI	CAGTG	3 cut(s)	216, 1247, 1642
Cac8I	GCNNGC	4 cut(s)	296, 1125, 1392, 2204
CciI	TCATGA	2 cut(s)	939, 1815
CfoI	GCGC	5 cut(s)	75, 300, 804, 1345, 2191
Cfr13I	GGNCC	4 cut(s)	806, 1075, 2040, 2331
CseI	GACGC	3 cut(s)	93, 1120, 1647
Csp6I	GTAC	5 cut(s)	89, 112, 514, 1227, 1948
CviQI	GTAC	5 cut(s)	89, 112, 514, 1227, 1948
DdeI	CTNAG	6 cut(s)	378, 927, 1179, 1491, 1634, 2059
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	6 cut(s)	695, 753, 1083, 1542, 1758, 1926
EarI	CTCTTC	6 cut(s)	695, 753, 1083, 1542, 1758, 1926
EciI	GGCGGA	1 cut(s)	1991
Ecl136II	GAGCTC	2 cut(s)	931, 1144
Eco130I	CCWWGG	5 cut(s)	477, 1098, 1234, 1395, 1562
Eco24I	GRGCYC	2 cut(s)	933, 1146
Eco32I	GATATC	1 cut(s)	937
Eco47I	GGWCC	3 cut(s)	806, 1075, 2331
Eco53kI	GAGCTC	2 cut(s)	931, 1144
Eco57I	CTGAAG	1 cut(s)	1991
Eco88I	CYCGRG	2 cut(s)	530, 2222
Eco91I	GGTNACC	1 cut(s)	2240
EcoICRI	GAGCTC	2 cut(s)	931, 1144
EcoO65I	GGTNACC	1 cut(s)	2240
EcoRII	CCWGG	1 cut(s)	1286
EcoRV	GATATC	1 cut(s)	937
EcoT14I	CCWWGG	5 cut(s)	477, 1098, 1234, 1395, 1562
EcoT22I	ATGCAT	3 cut(s)	1193, 1728, 2257
EcoT38I	GRGCYC	2 cut(s)	933, 1146
ErhI	CCWWGG	5 cut(s)	477, 1098, 1234, 1395, 1562
Esp3I	CGTCTC	3 cut(s)	76, 379, 1144
FalI	AAGNNNNNCTT	2 cut(s)	1859, 1891
FaqI	GGGAC	3 cut(s)	1593, 2069, 2317
FauNDI	CATATG	1 cut(s)	1845
FbaI	TGATCA	2 cut(s)	256, 1798
FblI	GTMKAC	1 cut(s)	2340
FokI	GGATG	7 cut(s)	986, 1256, 1286, 1514, 1529, 1545, 1985
FriOI	GRGCYC	2 cut(s)	933, 1146
FspBI	CTAG	2 cut(s)	708, 1760
FspI	TGCGCA	2 cut(s)	1344, 2190
GlaI	GCGC	5 cut(s)	74, 299, 803, 1344, 2190
GsuI	CTGGAG	2 cut(s)	617, 1103
HaeIII	GGCC	4 cut(s)	39, 580, 1394, 2042
HapII	CCGG	3 cut(s)	887, 2038, 2308
HgaI	GACGC	3 cut(s)	93, 1120, 1647
HhaI	GCGC	5 cut(s)	75, 300, 804, 1345, 2191
Hin6I	GCGC	5 cut(s)	73, 298, 802, 1343, 2189
HinP1I	GCGC	5 cut(s)	73, 298, 802, 1343, 2189
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	2325
HinfI	GANTC	8 cut(s)	424, 528, 538, 556, 767, 1118, 1700, 2282
HpaII	CCGG	3 cut(s)	887, 2038, 2308
HphI	GGTGA	4 cut(s)	335, 341, 1151, 1876
Hpy166II	GTNNAC	9 cut(s)	187, 516, 527, 784, 919, 1777, 2269, 2281, 2341
Hpy188I	TCNGA	9 cut(s)	124, 148, 241, 246, 1065, 1605, 1791, 1860, 2095
Hpy8I	GTNNAC	9 cut(s)	187, 516, 527, 784, 919, 1777, 2269, 2281, 2341
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	8 cut(s)	391, 440, 483, 696, 866, 1285, 1492, 2015
HpyCH4III	ACNGT	6 cut(s)	68, 93, 1069, 1155, 1894, 2240
HpyCH4IV	ACGT	2 cut(s)	183, 388
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1120, 1342, 1564, 2123, 2126, 2135, 2203, 2212, 2362
HpyF3I	CTNAG	6 cut(s)	378, 927, 1179, 1491, 1634, 2059
HpySE526I	ACGT	2 cut(s)	183, 388
HspAI	GCGC	5 cut(s)	73, 298, 802, 1343, 2189
Ksp22I	TGATCA	2 cut(s)	256, 1798
LmnI	GCTCC	8 cut(s)	374, 636, 715, 889, 1012, 1650, 1978, 2080
Lsp1109I	GCAGC	9 cut(s)	1428, 1431, 1762, 2129, 2132, 2135, 2138, 2203, 2206
LweI	GCATC	6 cut(s)	94, 964, 1234, 1492, 1567, 2007
MaeI	CTAG	2 cut(s)	708, 1760
MaeII	ACGT	2 cut(s)	183, 388
MaeIII	GTNAC	1 cut(s)	2240
MfeI	CAATTG	2 cut(s)	1807, 2014
MflI	RGATCY	2 cut(s)	152, 1399
MhlI	GDGCHC	2 cut(s)	933, 1146
MluI	ACGCGT	2 cut(s)	85, 1656
MlyI	GAGTC	4 cut(s)	522, 565, 1112, 2276
MmeI	TCCRAC	5 cut(s)	990, 1053, 1628, 1691, 1937
Mph1103I	ATGCAT	3 cut(s)	1193, 1728, 2257
MroXI	GAANNNNTTC	2 cut(s)	1871, 1968
MseI	TTAA	6 cut(s)	204, 282, 674, 1461, 1574, 2211
MslI	CAYNNNNRTG	1 cut(s)	2276
MspI	CCGG	3 cut(s)	887, 2038, 2308
MspR9I	CCNGG	3 cut(s)	1288, 2039, 2308
MunI	CAATTG	2 cut(s)	1807, 2014
MvaI	CCWGG	1 cut(s)	1288
MvnI	CGCG	5 cut(s)	87, 300, 804, 1530, 1658
MwoI	GCNNNNNNNGC	9 cut(s)	1120, 1342, 1564, 2123, 2126, 2135, 2203, 2212, 2362
NciI	CCSGG	2 cut(s)	2039, 2308
NcoI	CCATGG	2 cut(s)	1098, 1562
NdeI	CATATG	1 cut(s)	1845
NlaIV	GGNNCC	5 cut(s)	154, 1401, 1521, 1646, 2333
NmeAIII	GCCGAG	1 cut(s)	757
NsbI	TGCGCA	2 cut(s)	1344, 2190
NsiI	ATGCAT	3 cut(s)	1193, 1728, 2257
NspI	RCATGY	2 cut(s)	298, 2365
NspV	TTCGAA	1 cut(s)	427
PaeI	GCATGC	1 cut(s)	298
PagI	TCATGA	2 cut(s)	939, 1815
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdmI	GAANNNNTTC	2 cut(s)	1871, 1968
PfeI	GAWTC	4 cut(s)	424, 538, 767, 1700
PflFI	GACNNNGTC	1 cut(s)	2285
PfoI	TCCNGGA	1 cut(s)	1286
PleI	GAGTC	4 cut(s)	522, 564, 1112, 2276
PpsI	GAGTC	4 cut(s)	522, 564, 1112, 2276
PshBI	ATTAAT	1 cut(s)	1574
Psp124BI	GAGCTC	2 cut(s)	933, 1146
Psp6I	CCWGG	1 cut(s)	1286
PspEI	GGTNACC	1 cut(s)	2240
PspGI	CCWGG	1 cut(s)	1286
PspN4I	GGNNCC	5 cut(s)	154, 1401, 1521, 1646, 2333
PspPI	GGNCC	4 cut(s)	806, 1075, 2040, 2331
PstI	CTGCAG	1 cut(s)	1254
PsuI	RGATCY	2 cut(s)	152, 1399
PsyI	GACNNNGTC	1 cut(s)	2285
RsaI	GTAC	5 cut(s)	90, 113, 515, 1228, 1949
RsaNI	GTAC	5 cut(s)	89, 112, 514, 1227, 1948
RseI	CAYNNNNRTG	1 cut(s)	2276
SacI	GAGCTC	2 cut(s)	933, 1146
SaqAI	TTAA	6 cut(s)	204, 282, 674, 1461, 1574, 2211
Sau96I	GGNCC	4 cut(s)	806, 1075, 2040, 2331
ScaI	AGTACT	1 cut(s)	1228
SchI	GAGTC	4 cut(s)	522, 565, 1112, 2276
ScrFI	CCNGG	3 cut(s)	1288, 2039, 2308
SduI	GDGCHC	2 cut(s)	933, 1146
SfaNI	GCATC	6 cut(s)	94, 964, 1234, 1492, 1567, 2007
SfcI	CTRYAG	3 cut(s)	64, 893, 1250
SfuI	TTCGAA	1 cut(s)	427
SinI	GGWCC	3 cut(s)	806, 1075, 2331
SmiMI	CAYNNNNRTG	1 cut(s)	2276
SmlI	CTYRAG	4 cut(s)	810, 1016, 1145, 2164
SmoI	CTYRAG	4 cut(s)	810, 1016, 1145, 2164
SphI	GCATGC	1 cut(s)	298
SsiI	CCGC	3 cut(s)	804, 1528, 2002
SspI	AATATT	1 cut(s)	143
SspMI	CTAG	2 cut(s)	708, 1760
SstI	GAGCTC	2 cut(s)	933, 1146
StyD4I	CCNGG	3 cut(s)	1286, 2037, 2306
StyI	CCWWGG	5 cut(s)	477, 1098, 1234, 1395, 1562
TaaI	ACNGT	6 cut(s)	68, 93, 1069, 1155, 1894, 2240
TaiI	ACGT	2 cut(s)	186, 391
TaqI	TCGA	7 cut(s)	48, 287, 427, 465, 817, 933, 2178
TatI	WGTACW	1 cut(s)	1226
TauI	GCSGC	1 cut(s)	1530
TfiI	GAWTC	4 cut(s)	424, 538, 767, 1700
Tru1I	TTAA	6 cut(s)	204, 282, 674, 1461, 1574, 2211
Tru9I	TTAA	6 cut(s)	204, 282, 674, 1461, 1574, 2211
TscAI	CASTG	3 cut(s)	223, 1254, 1642
TseI	GCWGC	9 cut(s)	1441, 1444, 1750, 2117, 2120, 2123, 2126, 2191, 2194
TspGWI	ACGGA	2 cut(s)	165, 387
TspRI	CASTG	3 cut(s)	223, 1254, 1642
Tth111I	GACNNNGTC	1 cut(s)	2285
VpaK11BI	GGWCC	3 cut(s)	806, 1075, 2331
VspI	ATTAAT	1 cut(s)	1574
XapI	RAATTY	3 cut(s)	206, 410, 637
XceI	RCATGY	2 cut(s)	298, 2365
XmiI	GTMKAC	1 cut(s)	2340
XmnI	GAANNNNTTC	2 cut(s)	1871, 1968
XspI	CTAG	2 cut(s)	708, 1760
ZrmI	AGTACT	1 cut(s)	1228
Zsp2I	ATGCAT	3 cut(s)	1193, 1728, 2257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.