Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Forward (+)

3808906 .. 3811652

Gene Structure 2747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCGGCTTCTGGGATGAAGCCGTTGGTGGCGGCGATTGCTCTGTCTTGGTTTCTAAGCATGCAACAGCATTCTTCTTCTGCTAATGGAAAGCCACAAGTACCTTGTTTCTTCATTTTTGGAGACTCACTGGCTGACAATGGCAACAACAATGTTCTTGATACTTTGGCTAAAGTCAATTACCAGCCTTATGGTATCGACTTCCCCGGTGGCGCAGCAACCGGAAGATTCAGTAACGGTCGAACCACCGTCGATGTTCTCTCTGAACTTTTAGGCTTCGACAACTACATTCCACCATTTGCTTTTGTTAATGGCTCTGATATACTTAAAGGTGTGAACTATGCTTGCGGTGCGGCGGGAATTCGAAAAGAAACTGGCAAGCAATTGGGTGCAAGAATCAGCATGGGCAGACAGTTAAAGAACCACAAGATTATAATCTCGCGCATTGCCGACATACTTGGGAACAAGAGGTTAGCACACAAACACTTGCACAAGTGCTTATATTCAGTTGGATTGGGCAGCAACGACTACATCAACAATTACTTCGTGCCTCAGTATTACCATACCAGCAAAAAATATACCACTGCGAAATATGCTGAAGTTCTCATCAACCAATATTCTTGGGAAATACTGAGGTTGTACAAGTATGGAGCAAGGAAGGTGGCTTTGGTTGGCGTGGGACTAATAGGCTGCACCCCAAGTGCAATTTCTTCCTTTGGCACAAATGGGTCAGCATGTGTAGACACATTGAACATTGCAGCCCAACAGTTTAACCAAAGGCTTGTATCACTTGTTGATAAGCTCAACAACAATTTGACAGATGCAAAATTCATCTACATTAACAGCTTCGAAATGGGTTCTGGAGATCCTGCAGCCGCTGGCTTCACAGTTTCGAACGTTGGATGTTGTGCGGTAAATGAAGTTGGTCAATGTAAAGTTGACCATACTCCATGCAAGAACAGGACAGAGTACGTGTTCTGGGATGGATTCCATCCTACTGAAACCTTGAACCGAATCACTGCAATCAGATCATACAATGCTTTTAACTTTGCAGACACTTATCCAATGGATATTAGTCACCTTGTTCAGCTACAAATTAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

369

Amino Acids

40.3

Weight (kDa)

9.0

Isoelectric Point (pI)

21.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	38 - 341	9.5e-34	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	741
AccII	CGCG	1 cut(s)	442
AciI	CCGC	7 cut(s)	5, 32, 348, 353, 356, 876, 911
AclI	AACGTT	1 cut(s)	897
AclWI	GGATC	1 cut(s)	860
AcsI	RAATTY	2 cut(s)	360, 827
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	3 cut(s)	102, 641, 971
AflIII	ACRYGT	1 cut(s)	972
AgsI	TTSAA	2 cut(s)	751, 1009
AjuI	GAANNNNNNNTTGG	4 cut(s)	650, 682, 691, 723
AluBI	AGCT	3 cut(s)	802, 846, 1090
AluI	AGCT	3 cut(s)	802, 846, 1090
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	860
AlwNI	CAGNNNCTG	1 cut(s)	878
ApeKI	GCWGC	5 cut(s)	215, 519, 690, 758, 872
ApoI	RAATTY	2 cut(s)	360, 827
AseI	ATTAAT	1 cut(s)	1098
AspLEI	GCGC	2 cut(s)	215, 444
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	1070
AsuII	TTCGAA	3 cut(s)	364, 849, 893
BbvI	GCAGC	5 cut(s)	227, 531, 677, 770, 884
BccI	CCATC	2 cut(s)	977, 999
BceAI	ACGGC	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	870
BisI	GCNGC	9 cut(s)	6, 33, 216, 354, 520, 691, 759, 873, 876
BlsI	GCNGC	9 cut(s)	7, 34, 217, 355, 521, 692, 760, 874, 877
Bme1390I	CCNGG	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	811
BpmI	CTGGAG	1 cut(s)	882
Bpu14I	TTCGAA	3 cut(s)	364, 849, 893
BpuMI	CCSGG	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	973
BsaBI	GATNNNNATC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	135, 379
Bse3DI	GCAATG	2 cut(s)	444, 753
Bse8I	GATNNNNATC	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	4 cut(s)	21, 908, 988, 991
BseJI	GATNNNNATC	1 cut(s)	434
BseMI	GCAATG	2 cut(s)	444, 753
BseMII	CTCAG	2 cut(s)	566, 623
BseNI	ACTGG	2 cut(s)	135, 379
BseXI	GCAGC	5 cut(s)	227, 531, 677, 770, 884
BsgI	GTGCAG	1 cut(s)	676
Bsh1236I	CGCG	1 cut(s)	442
Bsh1285I	CGRYCG	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	207, 222
BslFI	GGGAC	1 cut(s)	693
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	693
BsmI	GAATGC	1 cut(s)	70
Bsp119I	TTCGAA	3 cut(s)	364, 849, 893
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	2 cut(s)	865, 1028
BspACI	CCGC	7 cut(s)	5, 32, 348, 353, 356, 876, 911
BspCNI	CTCAG	2 cut(s)	565, 624
BspFNI	CGCG	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	874
BspPI	GGATC	1 cut(s)	860
BspT104I	TTCGAA	3 cut(s)	364, 849, 893
BsrDI	GCAATG	2 cut(s)	444, 753
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	135, 379
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	2 cut(s)	865, 1028
Bst4CI	ACNGT	5 cut(s)	239, 250, 414, 768, 889
BstAUI	TGTACA	1 cut(s)	639
BstBAI	YACGTR	1 cut(s)	973
BstBI	TTCGAA	3 cut(s)	364, 849, 893
BstC8I	GCNNGC	4 cut(s)	62, 346, 380, 880
BstDEI	CTNAG	3 cut(s)	56, 552, 632
BstF5I	GGATG	4 cut(s)	21, 908, 988, 991
BstFNI	CGCG	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	215, 444
BstKTI	GATC	2 cut(s)	868, 1031
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	865, 1028
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 350, 593
BstNSI	RCATGY	2 cut(s)	64, 738
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	870
BstUI	CGCG	1 cut(s)	442
BstV1I	GCAGC	5 cut(s)	227, 531, 677, 770, 884
BstX2I	RGATCY	1 cut(s)	865
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	865
BtsCI	GGATG	4 cut(s)	21, 908, 988, 991
BtsI	GCAGTG	2 cut(s)	582, 1017
BtsIMutI	CAGTG	3 cut(s)	128, 582, 1017
Cac8I	GCNNGC	4 cut(s)	62, 346, 380, 880
CaiI	CAGNNNCTG	1 cut(s)	878
CfoI	GCGC	2 cut(s)	215, 444
Csp6I	GTAC	3 cut(s)	101, 640, 970
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	4 cut(s)	61, 403, 735, 951
CviQI	GTAC	3 cut(s)	101, 640, 970
DdeI	CTNAG	3 cut(s)	56, 552, 632
DpnI	GATC	2 cut(s)	867, 1030
DpnII	GATC	2 cut(s)	865, 1028
Eco57I	CTGAAG	1 cut(s)	618
EcoRI	GAATTC	1 cut(s)	360
FaeI	CATG	4 cut(s)	64, 406, 738, 954
FaqI	GGGAC	1 cut(s)	693
FatI	CATG	4 cut(s)	60, 402, 734, 950
FauI	CCCGC	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	9 cut(s)	6, 33, 216, 354, 520, 691, 759, 873, 876
FokI	GGATG	4 cut(s)	28, 915, 978, 995
Fsp4HI	GCNGC	9 cut(s)	6, 33, 216, 354, 520, 691, 759, 873, 876
GlaI	GCGC	2 cut(s)	214, 443
GluI	GCNGC	9 cut(s)	6, 33, 216, 354, 520, 691, 759, 873, 876
GsuI	CTGGAG	1 cut(s)	882
HapII	CCGG	2 cut(s)	207, 222
HhaI	GCGC	2 cut(s)	215, 444
Hin1II	CATG	4 cut(s)	64, 406, 738, 954
Hin6I	GCGC	2 cut(s)	213, 442
HinP1I	GCGC	2 cut(s)	213, 442
HincII	GTYRAC	1 cut(s)	940
HindII	GTYRAC	1 cut(s)	940
HinfI	GANTC	5 cut(s)	125, 228, 396, 987, 1014
HpaII	CCGG	2 cut(s)	207, 222
HphI	GGTGA	1 cut(s)	1070
Hpy166II	GTNNAC	3 cut(s)	337, 742, 940
Hpy188I	TCNGA	3 cut(s)	265, 319, 1028
Hpy188III	TCNNGA	2 cut(s)	158, 861
Hpy8I	GTNNAC	3 cut(s)	337, 742, 940
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	652
HpyCH4III	ACNGT	5 cut(s)	239, 250, 414, 768, 889
HpyCH4IV	ACGT	2 cut(s)	897, 972
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 350, 593
HpyF3I	CTNAG	3 cut(s)	56, 552, 632
HpySE526I	ACGT	2 cut(s)	897, 972
Hsp92II	CATG	4 cut(s)	64, 406, 738, 954
HspAI	GCGC	2 cut(s)	213, 442
Kzo9I	GATC	2 cut(s)	865, 1028
LmnI	GCTCC	1 cut(s)	650
Lsp1109I	GCAGC	5 cut(s)	227, 531, 677, 770, 884
LweI	GCATC	1 cut(s)	811
MaeII	ACGT	2 cut(s)	897, 972
MaeIII	GTNAC	2 cut(s)	233, 1076
MalI	GATC	2 cut(s)	867, 1030
MboI	GATC	2 cut(s)	865, 1028
MboII	GAAGA	5 cut(s)	66, 69, 103, 237, 702
MfeI	CAATTG	1 cut(s)	383
MflI	RGATCY	1 cut(s)	865
MluCI	AATT	8 cut(s)	178, 360, 383, 538, 705, 811, 827, 1095
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	490, 880
MnlI	CCTC	3 cut(s)	462, 561, 627
MseI	TTAA	7 cut(s)	309, 327, 416, 771, 840, 1044, 1098
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	2 cut(s)	207, 222
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	70
MvnI	CGCG	1 cut(s)	442
MwoI	GCNNNNNNNGC	3 cut(s)	38, 350, 593
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	2 cut(s)	865, 1028
NlaIII	CATG	4 cut(s)	64, 406, 738, 954
NmuCI	GTSAC	1 cut(s)	1076
NspI	RCATGY	2 cut(s)	64, 738
NspV	TTCGAA	3 cut(s)	364, 849, 893
PaeI	GCATGC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	4 cut(s)	228, 396, 987, 1014
PkrI	GCNGC	9 cut(s)	7, 34, 217, 355, 521, 692, 760, 874, 877
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	973
PshBI	ATTAAT	1 cut(s)	1098
PsiI	TTATAA	1 cut(s)	434
Psp1406I	AACGTT	1 cut(s)	897
PstI	CTGCAG	1 cut(s)	874
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	1 cut(s)	865
RsaI	GTAC	3 cut(s)	102, 641, 971
RsaNI	GTAC	3 cut(s)	101, 640, 970
SaqAI	TTAA	7 cut(s)	309, 327, 416, 771, 840, 1044, 1098
SatI	GCNGC	9 cut(s)	6, 33, 216, 354, 520, 691, 759, 873, 876
Sau3AI	GATC	2 cut(s)	865, 1028
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	811
SfcI	CTRYAG	1 cut(s)	870
SfuI	TTCGAA	3 cut(s)	364, 849, 893
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	8 cut(s)	178, 360, 383, 538, 705, 811, 827, 1095
SsiI	CCGC	7 cut(s)	5, 32, 348, 353, 356, 876, 911
SspI	AATATT	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	5 cut(s)	239, 250, 414, 768, 889
TaiI	ACGT	2 cut(s)	900, 975
TaqI	TCGA	7 cut(s)	198, 241, 252, 279, 364, 849, 893
TasI	AATT	8 cut(s)	178, 360, 383, 538, 705, 811, 827, 1095
TatI	WGTACW	1 cut(s)	639
TauI	GCSGC	4 cut(s)	8, 35, 356, 878
TfiI	GAWTC	4 cut(s)	228, 396, 987, 1014
Tru1I	TTAA	7 cut(s)	309, 327, 416, 771, 840, 1044, 1098
Tru9I	TTAA	7 cut(s)	309, 327, 416, 771, 840, 1044, 1098
TscAI	CASTG	3 cut(s)	135, 589, 1024
TseFI	GTSAC	1 cut(s)	1076
TseI	GCWGC	5 cut(s)	215, 519, 690, 758, 872
Tsp45I	GTSAC	1 cut(s)	1076
TspDTI	ATGAA	4 cut(s)	32, 103, 820, 933
TspRI	CASTG	3 cut(s)	135, 589, 1024
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	2 cut(s)	360, 827
XceI	RCATGY	2 cut(s)	64, 738
XmiI	GTMKAC	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.