Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000904.1

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Forward (+)

33519 .. 35999

Gene Structure 2481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000904.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggcttgtgggatgaagccttgggtggtggtgattgctctgacttggtttttaagcctgcaagaacattcttcttctgttcatggaaagccgcaagtaccttgtttcttcatttttggagactcactggctgataatggcaacaacaacgtgcttgatactttggctaaagtcgattaccagccttatggtatcgacttccctagtggcacagcaacgggaagattcagcaacggtcgaaccaccgtcgatgttctctctgaacttttaggctttgacaactatattccaccatttgcttttgttaatggctctgacatacttaaaggagtgaactatgcttgtggcgcggcaggaattcgaaaagaaactggcaagcaattgggtgcaagaatcagcatggccagacagttaaagaaccacaagattataatctcacgcattgtcgacatacttgggaagaagagcttagcccaaaagcacttaaacaagtgcttatattcagttggaatgggcagcaatgactacatcaacaattacttcgtgcctcagtattaccacaccagcaaaaaatttaccactgagcaatatgctgaagttctcatcaaccaatattcttgggaaatcctgaagttgtacaagtatggagcaaggaaggtggctttggttggattgggactaataggctgcaccccaagtgcaatttcttcctttggcacaaatgggtcagcatgtgtagacacattgaacattgcagcgcaactgtttaaccaaaggcttgtatcacttgtggacaagctcaacagcaatttgacagatgcaaaattcatctatattaacagctttgaaatgggttctggagatcctgcagctgctggcttcacagtttcgaatgttgggtgttgtgcggtaaatgaagttggtcaatgtaatgttgaccatactccatgcaagaacaggactgagtacgtgttctgggacggattccatcctactgaagccttgaaccgaatcactgcaatcagatcatacaatgcttttaaccctgtagacacttatccaatggatattagtcaccttgttcagctacaaattaataactcagcaactccagctacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

373

Amino Acids

40.89

Weight (kDa)

8.24

Isoelectric Point (pI)

21.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AccI	GTMKAC	3 cut(s)	447, 738, 1050
AccII	CGCG	1 cut(s)	350
AciI	CCGC	3 cut(s)	92, 350, 908
AclWI	GGATC	1 cut(s)	857
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	3 cut(s)	357, 572, 824
AcuI	CTGAAG	3 cut(s)	615, 650, 1017
AfaI	GTAC	3 cut(s)	99, 638, 968
AflIII	ACRYGT	1 cut(s)	969
AgsI	TTSAA	3 cut(s)	748, 848, 1006
AjuI	GAANNNNNNNTTGG	4 cut(s)	647, 679, 688, 720
AluBI	AGCT	6 cut(s)	468, 799, 843, 872, 1087, 1115
AluI	AGCT	6 cut(s)	468, 799, 843, 872, 1087, 1115
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	857
AlwNI	CAGNNNCTG	1 cut(s)	875
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	5 cut(s)	516, 687, 755, 869, 872
ApoI	RAATTY	3 cut(s)	357, 572, 824
AseI	ATTAAT	1 cut(s)	1095
AspLEI	GCGC	2 cut(s)	350, 760
AsuHPI	GGTGA	2 cut(s)	43, 1067
AsuII	TTCGAA	2 cut(s)	361, 890
BalI	TGGCCA	1 cut(s)	404
BbvI	GCAGC	5 cut(s)	528, 674, 767, 859, 881
BccI	CCATC	1 cut(s)	996
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	204, 1120
BfmI	CTRYAG	2 cut(s)	867, 1047
BisI	GCNGC	7 cut(s)	92, 351, 517, 688, 756, 870, 873
BlpI	GCTNAGC	1 cut(s)	469
BlsI	GCNGC	7 cut(s)	93, 352, 518, 689, 757, 871, 874
BmsI	GCATC	1 cut(s)	808
BpmI	CTGGAG	2 cut(s)	879, 1095
Bpu1102I	GCTNAGC	1 cut(s)	469
Bpu14I	TTCGAA	2 cut(s)	361, 890
BsaAI	YACGTR	1 cut(s)	970
BsaBI	GATNNNNATC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	132, 376
Bse3DI	GCAATG	2 cut(s)	526, 750
Bse8I	GATNNNNATC	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	2 cut(s)	18, 988
BseJI	GATNNNNATC	1 cut(s)	431
BseMI	GCAATG	2 cut(s)	526, 750
BseMII	CTCAG	4 cut(s)	563, 573, 954, 1116
BseNI	ACTGG	2 cut(s)	132, 376
BseXI	GCAGC	5 cut(s)	528, 674, 767, 859, 881
BsgI	GTGCAG	1 cut(s)	673
Bsh1236I	CGCG	1 cut(s)	350
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	238
BslFI	GGGAC	2 cut(s)	690, 992
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	690, 992
BsnI	GGCC	1 cut(s)	404
Bsp119I	TTCGAA	2 cut(s)	361, 890
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	2 cut(s)	862, 1025
Bsp1720I	GCTNAGC	1 cut(s)	469
BspACI	CCGC	3 cut(s)	92, 350, 908
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	4 cut(s)	562, 574, 955, 1115
BspFNI	CGCG	1 cut(s)	350
BspMAI	CTGCAG	1 cut(s)	871
BspPI	GGATC	1 cut(s)	857
BspQI	GCTCTTC	1 cut(s)	458
BspT104I	TTCGAA	2 cut(s)	361, 890
BsrDI	GCAATG	2 cut(s)	526, 750
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	2 cut(s)	132, 376
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	862, 1025
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	5 cut(s)	236, 247, 411, 765, 886
Bst6I	CTCTTC	1 cut(s)	458
BstAUI	TGTACA	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	970
BstBI	TTCGAA	2 cut(s)	361, 890
BstC8I	GCNNGC	3 cut(s)	59, 377, 877
BstDEI	CTNAG	5 cut(s)	469, 549, 582, 963, 1102
BstF5I	GGATG	2 cut(s)	18, 988
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	2 cut(s)	350, 760
BstKTI	GATC	2 cut(s)	865, 1028
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	2 cut(s)	862, 1025
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 1112
BstNSI	RCATGY	1 cut(s)	735
BstSFI	CTRYAG	2 cut(s)	867, 1047
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	5 cut(s)	528, 674, 767, 859, 881
BstX2I	RGATCY	1 cut(s)	862
BstXI	CCANNNNNNTGG	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	18, 988
BtsI	GCAGTG	1 cut(s)	1014
BtsIMutI	CAGTG	3 cut(s)	125, 579, 1014
Cac8I	GCNNGC	3 cut(s)	59, 377, 877
CaiI	CAGNNNCTG	1 cut(s)	875
CfoI	GCGC	2 cut(s)	350, 760
Csp6I	GTAC	3 cut(s)	98, 637, 967
CspCI	CAANNNNNGTGG	2 cut(s)	639, 674
CviAII	CATG	4 cut(s)	83, 400, 732, 948
CviQI	GTAC	3 cut(s)	98, 637, 967
DdeI	CTNAG	5 cut(s)	469, 549, 582, 963, 1102
DpnI	GATC	2 cut(s)	864, 1027
DpnII	GATC	2 cut(s)	862, 1025
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	20
Eco57I	CTGAAG	3 cut(s)	615, 650, 1017
EcoRI	GAATTC	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	4 cut(s)	86, 403, 735, 951
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FaqI	GGGAC	2 cut(s)	690, 992
FatI	CATG	4 cut(s)	82, 399, 731, 947
FblI	GTMKAC	3 cut(s)	447, 738, 1050
Fnu4HI	GCNGC	7 cut(s)	92, 351, 517, 688, 756, 870, 873
FokI	GGATG	2 cut(s)	25, 975
Fsp4HI	GCNGC	7 cut(s)	92, 351, 517, 688, 756, 870, 873
FspBI	CTAG	2 cut(s)	204, 1120
GlaI	GCGC	2 cut(s)	349, 759
GluI	GCNGC	7 cut(s)	92, 351, 517, 688, 756, 870, 873
GsuI	CTGGAG	2 cut(s)	879, 1095
HaeIII	GGCC	1 cut(s)	404
HhaI	GCGC	2 cut(s)	350, 760
Hin1II	CATG	4 cut(s)	86, 403, 735, 951
Hin6I	GCGC	2 cut(s)	348, 758
HinP1I	GCGC	2 cut(s)	348, 758
HincII	GTYRAC	2 cut(s)	448, 937
HindII	GTYRAC	2 cut(s)	448, 937
HinfI	GANTC	5 cut(s)	122, 225, 393, 984, 1011
HphI	GGTGA	2 cut(s)	43, 1067
Hpy166II	GTNNAC	6 cut(s)	334, 448, 739, 793, 937, 1051
Hpy188I	TCNGA	4 cut(s)	42, 262, 316, 1025
Hpy188III	TCNNGA	2 cut(s)	628, 858
Hpy8I	GTNNAC	6 cut(s)	334, 448, 739, 793, 937, 1051
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	649
HpyCH4III	ACNGT	5 cut(s)	236, 247, 411, 765, 886
HpyCH4IV	ACGT	2 cut(s)	150, 969
HpyCH4V	TGCA	9 cut(s)	61, 389, 690, 701, 755, 821, 869, 951, 1019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 1112
HpyF3I	CTNAG	5 cut(s)	469, 549, 582, 963, 1102
HpySE526I	ACGT	2 cut(s)	150, 969
Hsp92II	CATG	4 cut(s)	86, 403, 735, 951
HspAI	GCGC	2 cut(s)	348, 758
Kzo9I	GATC	2 cut(s)	862, 1025
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	1 cut(s)	647
Lsp1109I	GCAGC	5 cut(s)	528, 674, 767, 859, 881
LweI	GCATC	1 cut(s)	808
MaeI	CTAG	2 cut(s)	204, 1120
MaeII	ACGT	2 cut(s)	150, 969
MaeIII	GTNAC	1 cut(s)	1073
MalI	GATC	2 cut(s)	864, 1027
MboI	GATC	2 cut(s)	862, 1025
MboII	GAAGA	7 cut(s)	63, 66, 100, 234, 472, 475, 699
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	1 cut(s)	862
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	8 cut(s)	357, 380, 535, 572, 702, 808, 824, 1092
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	487, 649
MnlI	CCTC	1 cut(s)	558
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	9 cut(s)	53, 306, 324, 413, 485, 768, 837, 1041, 1095
Msp20I	TGGCCA	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	872
MunI	CAATTG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	347, 1112
NdeII	GATC	2 cut(s)	862, 1025
NlaIII	CATG	4 cut(s)	86, 403, 735, 951
NmuCI	GTSAC	1 cut(s)	1073
NspI	RCATGY	1 cut(s)	735
NspV	TTCGAA	2 cut(s)	361, 890
PciSI	GCTCTTC	1 cut(s)	458
PfeI	GAWTC	4 cut(s)	225, 393, 984, 1011
PkrI	GCNGC	7 cut(s)	93, 352, 518, 689, 757, 871, 874
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	970
PshBI	ATTAAT	1 cut(s)	1095
PsiI	TTATAA	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	871
PstNI	CAGNNNCTG	1 cut(s)	875
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	872
RsaI	GTAC	3 cut(s)	99, 638, 968
RsaNI	GTAC	3 cut(s)	98, 637, 967
SalI	GTCGAC	1 cut(s)	446
SapI	GCTCTTC	1 cut(s)	458
SaqAI	TTAA	9 cut(s)	53, 306, 324, 413, 485, 768, 837, 1041, 1095
SatI	GCNGC	7 cut(s)	92, 351, 517, 688, 756, 870, 873
Sau3AI	GATC	2 cut(s)	862, 1025
SchI	GAGTC	1 cut(s)	116
SfaNI	GCATC	1 cut(s)	808
SfcI	CTRYAG	2 cut(s)	867, 1047
SfuI	TTCGAA	2 cut(s)	361, 890
Sse9I	AATT	8 cut(s)	357, 380, 535, 572, 702, 808, 824, 1092
SsiI	CCGC	3 cut(s)	92, 350, 908
SspI	AATATT	1 cut(s)	614
SspMI	CTAG	2 cut(s)	204, 1120
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	5 cut(s)	236, 247, 411, 765, 886
TaiI	ACGT	2 cut(s)	153, 972
TaqI	TCGA	7 cut(s)	174, 195, 238, 249, 361, 447, 890
TasI	AATT	8 cut(s)	357, 380, 535, 572, 702, 808, 824, 1092
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	2 cut(s)	94, 353
TfiI	GAWTC	4 cut(s)	225, 393, 984, 1011
Tru1I	TTAA	9 cut(s)	53, 306, 324, 413, 485, 768, 837, 1041, 1095
Tru9I	TTAA	9 cut(s)	53, 306, 324, 413, 485, 768, 837, 1041, 1095
TscAI	CASTG	3 cut(s)	132, 586, 1021
TseFI	GTSAC	1 cut(s)	1073
TseI	GCWGC	5 cut(s)	516, 687, 755, 869, 872
Tsp45I	GTSAC	1 cut(s)	1073
TspDTI	ATGAA	5 cut(s)	29, 71, 100, 817, 930
TspGWI	ACGGA	1 cut(s)	996
TspRI	CASTG	3 cut(s)	132, 586, 1021
VspI	ATTAAT	1 cut(s)	1095
XapI	RAATTY	3 cut(s)	357, 572, 824
XceI	RCATGY	1 cut(s)	735
XmiI	GTMKAC	3 cut(s)	447, 738, 1050
XspI	CTAG	2 cut(s)	204, 1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.