Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Forward (+)

86017711 .. 86019013

Gene Structure 1303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAATATTTTCTTATTACAGCTAAACTTTTAGGCTTTGACAACTACATTCCACCATTTGCTTTTGTTAATGGCTCTGACATACTTAAAGGTGTGAACTATGCTTGTGGCGCGGCAGGAATTCGAAAAGAAACTGGCAAGCAATTGGGTGCAAGAATCAGCATGGGCAGACAGTTAAAGAACCACAAGATTATAATCTCACGCATTGTCGACATACTTGGGAAGAAGAGCTTAGCCCAAAAGCACTTAAACAAGTGCTTATATTCAGTTGGAATGGGCAGCAATGACTACATCAACAATTACTTCGTGCCTCAGTATTACCACACCAGCAAAAAATTTACCACTGAGCAATATGCTGAAGTTCTCATCAACCAATATTCTTGGGAAATACTGAAGTTGTACAAGTATGGAGCAAGGGAGGTGGCTTTGGTTGGATTGGGACTAATAGGCTGCACCCCAAGTGCAATTTCTTCCTTTGGCACAAATGGGTCAGCATGTGTAGACACATTGAACATTGCAGCGCAACTGTTTAACCAAGGGCTTGTATCACTTGTGGACAAGCTCAACAGCAATTTGACAGATGCAAAATTCATCTATATTAACAGCTTTGAAATGGGTTCTGGAGATCCTGCAGCTGGTGGCTTCACAGTTTCGAATGTTGGGTGTTGTGCGGTAAATGAAGTTGGTCAATGTAATGTTGACCATACTCCATGCAAGAACAGGACTGAGTACGTGTTCTGGGACGGATTCCATCCTACTGAAGCCTTGAACCGAATTACTGCAATCAGATCATACAATGCTTTTAACCCTGTAGACACTTATCCAATGGATATTAGTCACCTTGTTCAGCTACAAATTAATAACCCAGCAACTCCAGCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

294

Amino Acids

32.32

Weight (kDa)

8.32

Isoelectric Point (pI)

23.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	8 - 261	6.8e-24	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AccI	GTMKAC	3 cut(s)	210, 501, 813
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	113, 671
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	3 cut(s)	120, 335, 587
AcuI	CTGAAG	3 cut(s)	378, 413, 780
AfaI	GTAC	2 cut(s)	401, 731
AfiI	CCNNNNNNNGG	1 cut(s)	635
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	3 cut(s)	511, 611, 769
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AluBI	AGCT	7 cut(s)	23, 231, 562, 606, 635, 850, 878
AluI	AGCT	7 cut(s)	23, 231, 562, 606, 635, 850, 878
AlwI	GGATC	1 cut(s)	620
ApeKI	GCWGC	4 cut(s)	279, 450, 518, 632
ApoI	RAATTY	3 cut(s)	120, 335, 587
AseI	ATTAAT	1 cut(s)	858
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	113, 523
AsuHPI	GGTGA	1 cut(s)	830
AsuII	TTCGAA	2 cut(s)	124, 653
BbvI	GCAGC	4 cut(s)	291, 437, 530, 644
BccI	CCATC	1 cut(s)	759
BfaI	CTAG	1 cut(s)	883
BfmI	CTRYAG	2 cut(s)	630, 810
BisI	GCNGC	5 cut(s)	114, 280, 451, 519, 633
BlpI	GCTNAGC	1 cut(s)	232
BlsI	GCNGC	5 cut(s)	115, 281, 452, 520, 634
BmsI	GCATC	1 cut(s)	571
BpmI	CTGGAG	2 cut(s)	642, 858
Bpu1102I	GCTNAGC	1 cut(s)	232
Bpu14I	TTCGAA	2 cut(s)	124, 653
BsaAI	YACGTR	1 cut(s)	733
BsaBI	GATNNNNATC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	2 cut(s)	289, 513
Bse8I	GATNNNNATC	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	1 cut(s)	751
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMI	GCAATG	2 cut(s)	289, 513
BseMII	CTCAG	3 cut(s)	326, 336, 717
BseNI	ACTGG	1 cut(s)	139
BseXI	GCAGC	4 cut(s)	291, 437, 530, 644
BseYI	CCCAGC	1 cut(s)	865
BsgI	GTGCAG	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	113
BslFI	GGGAC	2 cut(s)	453, 755
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmFI	GGGAC	2 cut(s)	453, 755
Bsp119I	TTCGAA	2 cut(s)	124, 653
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	625, 788
Bsp1720I	GCTNAGC	1 cut(s)	232
BspACI	CCGC	2 cut(s)	113, 671
BspCNI	CTCAG	3 cut(s)	325, 337, 718
BspFNI	CGCG	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	1 cut(s)	620
BspQI	GCTCTTC	1 cut(s)	221
BspT104I	TTCGAA	2 cut(s)	124, 653
BsrDI	GCAATG	2 cut(s)	289, 513
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	2 cut(s)	625, 788
BssT1I	CCWWGG	1 cut(s)	535
Bst4CI	ACNGT	3 cut(s)	174, 528, 649
Bst6I	CTCTTC	1 cut(s)	221
BstAUI	TGTACA	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	733
BstBI	TTCGAA	2 cut(s)	124, 653
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	4 cut(s)	232, 312, 345, 726
BstF5I	GGATG	1 cut(s)	751
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	113, 523
BstKTI	GATC	2 cut(s)	628, 791
BstMBI	GATC	2 cut(s)	625, 788
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 875
BstNSI	RCATGY	1 cut(s)	498
BstSFI	CTRYAG	2 cut(s)	630, 810
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	4 cut(s)	291, 437, 530, 644
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BtsCI	GGATG	1 cut(s)	751
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	140
CfoI	GCGC	2 cut(s)	113, 523
Csp6I	GTAC	2 cut(s)	400, 730
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	3 cut(s)	163, 495, 711
CviQI	GTAC	2 cut(s)	400, 730
DdeI	CTNAG	4 cut(s)	232, 312, 345, 726
DpnI	GATC	2 cut(s)	627, 790
DpnII	GATC	2 cut(s)	625, 788
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	535
Eco57I	CTGAAG	3 cut(s)	378, 413, 780
EcoRI	GAATTC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	3 cut(s)	166, 498, 714
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	2 cut(s)	453, 755
FatI	CATG	3 cut(s)	162, 494, 710
FblI	GTMKAC	3 cut(s)	210, 501, 813
Fnu4HI	GCNGC	5 cut(s)	114, 280, 451, 519, 633
FokI	GGATG	1 cut(s)	738
Fsp4HI	GCNGC	5 cut(s)	114, 280, 451, 519, 633
FspBI	CTAG	1 cut(s)	883
GlaI	GCGC	2 cut(s)	112, 522
GluI	GCNGC	5 cut(s)	114, 280, 451, 519, 633
GsaI	CCCAGC	1 cut(s)	869
GsuI	CTGGAG	2 cut(s)	642, 858
HhaI	GCGC	2 cut(s)	113, 523
Hin1II	CATG	3 cut(s)	166, 498, 714
Hin6I	GCGC	2 cut(s)	111, 521
HinP1I	GCGC	2 cut(s)	111, 521
HincII	GTYRAC	2 cut(s)	211, 700
HindII	GTYRAC	2 cut(s)	211, 700
HinfI	GANTC	2 cut(s)	156, 747
HphI	GGTGA	1 cut(s)	830
Hpy166II	GTNNAC	6 cut(s)	97, 211, 502, 556, 700, 814
Hpy188I	TCNGA	2 cut(s)	79, 788
Hpy188III	TCNNGA	1 cut(s)	621
Hpy8I	GTNNAC	6 cut(s)	97, 211, 502, 556, 700, 814
HpyCH4III	ACNGT	3 cut(s)	174, 528, 649
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	8 cut(s)	152, 453, 464, 518, 584, 632, 714, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 875
HpyF3I	CTNAG	4 cut(s)	232, 312, 345, 726
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	3 cut(s)	166, 498, 714
HspAI	GCGC	2 cut(s)	111, 521
Kzo9I	GATC	2 cut(s)	625, 788
LguI	GCTCTTC	1 cut(s)	221
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	4 cut(s)	291, 437, 530, 644
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	1 cut(s)	883
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	1 cut(s)	836
MalI	GATC	2 cut(s)	627, 790
MboI	GATC	2 cut(s)	625, 788
MboII	GAAGA	3 cut(s)	235, 238, 462
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	1 cut(s)	625
MluCI	AATT	9 cut(s)	120, 143, 298, 335, 465, 571, 587, 774, 855
MmeI	TCCRAC	2 cut(s)	250, 412
MnlI	CCTC	2 cut(s)	321, 412
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	8 cut(s)	69, 87, 176, 248, 531, 600, 804, 858
MspA1I	CMGCKG	1 cut(s)	635
MunI	CAATTG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	110, 875
NdeII	GATC	2 cut(s)	625, 788
NlaIII	CATG	3 cut(s)	166, 498, 714
NmuCI	GTSAC	1 cut(s)	836
NspI	RCATGY	1 cut(s)	498
NspV	TTCGAA	2 cut(s)	124, 653
PciSI	GCTCTTC	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	156, 747
PkrI	GCNGC	5 cut(s)	115, 281, 452, 520, 634
Ppu21I	YACGTR	1 cut(s)	733
PshBI	ATTAAT	1 cut(s)	858
PsiI	TTATAA	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	865
PstI	CTGCAG	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	401, 731
RsaNI	GTAC	2 cut(s)	400, 730
SalI	GTCGAC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	221
SaqAI	TTAA	8 cut(s)	69, 87, 176, 248, 531, 600, 804, 858
SatI	GCNGC	5 cut(s)	114, 280, 451, 519, 633
Sau3AI	GATC	2 cut(s)	625, 788
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	2 cut(s)	630, 810
SfuI	TTCGAA	2 cut(s)	124, 653
Sse9I	AATT	9 cut(s)	120, 143, 298, 335, 465, 571, 587, 774, 855
SsiI	CCGC	2 cut(s)	113, 671
SspI	AATATT	2 cut(s)	8, 377
SspMI	CTAG	1 cut(s)	883
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	3 cut(s)	174, 528, 649
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	3 cut(s)	124, 210, 653
TasI	AATT	9 cut(s)	120, 143, 298, 335, 465, 571, 587, 774, 855
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	156, 747
Tru1I	TTAA	8 cut(s)	69, 87, 176, 248, 531, 600, 804, 858
Tru9I	TTAA	8 cut(s)	69, 87, 176, 248, 531, 600, 804, 858
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	836
TseI	GCWGC	4 cut(s)	279, 450, 518, 632
Tsp45I	GTSAC	1 cut(s)	836
TspDTI	ATGAA	2 cut(s)	580, 693
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	1 cut(s)	349
VspI	ATTAAT	1 cut(s)	858
XapI	RAATTY	3 cut(s)	120, 335, 587
XceI	RCATGY	1 cut(s)	498
XmiI	GTMKAC	3 cut(s)	210, 501, 813
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.