Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

3478564 .. 3481309

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCTTGTGGCATGAAACTATTGTTGGTAGCAACTGCTCTATCTTTGGCGTTGAGCACTCAACATTTTGTCCAGGGAAAGCCACAGGTGCGTGAGCCACAGGTGCCCTGCTTTTTCATATTTGGAGACTCTGTGTCTGATAATGGCAACAACAACTTGCTTCCCACATTTGCCAAAGTCAACTACAGTCCCTATGGCGTTGACTTTCCTCAGGGCCCAACAGGAAGGTTCTGCAATGGCCGAAACATAGTTGATGTGCTTGCTGAGCTTCTGGGATTTGAAAACTACATTCCACCATTTGCTTATGCCAATGGCTCTGAAATAGTAAAAGGTGTGAATTATGCATCTGGTGCAGCAGGAATTCGAAAAGAAAGTGGGAGGCAGTTGGGTGCACGTATCAGCATGGGAGAACAGCTGAAGAATCACAGAACCACAGTCTTGCGAATTATCGACATACTTGGGAAGAGAAGCTTAGCCAAAAAGCACTTAAACAAGTGCTTATATTCAGTTGGGATGGGCAGCAATGACTACATTAACAATTACTTCCTGCCTCAGTATTACCAGACCAGTAAAAAATATACCCTTGAGGAATATGCAGAAGTTCTTATCAAACAATACACCCAGCAAATACTGAGGTTGCGCAAGTATGGAGCAAGGAAGGTTTCTTTGGTTGGCCTGGGGCTAATTGGCTGCACCCCAGATGCAATTAAGACCTATGGCACCAATGGATCTTCTTGTGTGGAAAAATTGAACAATGCATCCCAACAATTTAATCAAAAGCTGGTGGCTCTTGTTGATGAGCTCAACACCAATTTTACTGATTCAAAATTCATCTATGTCAACAGCTATGAAATGGGCTCAGGGGACCCTACATTAGTTGGGTTCAAGGTTTTGGATGCTGGGTGCTGTGAAGTGGATCAATATGGTCAATGTGCTCCTAACAAAACTCCATGCCAGAATAGGACTGATTATGTTTTCTGGGACGGATTTCATCCTAGTGAGGCCTCCAATTTAATCAGTGCCAGCAGAACCTACTCAGCTTATAACGCTTCAGACACTTATCCAATGGATATCAGTCACTTAGTTCAGCTACAACTTGAGCCTCAAGTCACAGCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

374

Amino Acids

41.22

Weight (kDa)

8.4

Isoelectric Point (pI)

24.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1044
Acc16I	TGCGCA	1 cut(s)	641
AccB1I	GGYRCC	2 cut(s)	103, 719
AclWI	GGATC	2 cut(s)	736, 924
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	360, 827
AcuI	CTGAAG	2 cut(s)	437, 1035
AgsI	TTSAA	4 cut(s)	281, 751, 825, 886
AhdI	GACNNNNNGTC	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	72, 675
AjuI	GAANNNNNNNTTGG	4 cut(s)	8, 40, 650, 682
AloI	GAACNNNNNNTCC	2 cut(s)	743, 775
AluBI	AGCT	8 cut(s)	268, 415, 471, 781, 802, 846, 1040, 1090
AluI	AGCT	8 cut(s)	268, 415, 471, 781, 802, 846, 1040, 1090
Alw21I	GWGCWC	4 cut(s)	59, 394, 804, 937
Alw26I	GTCTC	1 cut(s)	120
Alw44I	GTGCAC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	736, 924
AoxI	GGCC	4 cut(s)	214, 238, 673, 1002
ApaI	GGGCCC	1 cut(s)	218
ApaLI	GTGCAC	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	353, 519, 690
ApoI	RAATTY	2 cut(s)	360, 827
AspLEI	GCGC	1 cut(s)	642
AspS9I	GGNCC	3 cut(s)	214, 215, 865
AsuII	TTCGAA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	865
AxyI	CCTNAGG	1 cut(s)	210
BaeGI	GKGCMC	3 cut(s)	108, 218, 394
BanI	GGYRCC	2 cut(s)	103, 719
BanII	GRGCYC	3 cut(s)	218, 804, 860
Bbv12I	GWGCWC	4 cut(s)	59, 394, 804, 937
BbvI	GCAGC	3 cut(s)	365, 531, 677
BccI	CCATC	1 cut(s)	508
BciT130I	CCWGG	2 cut(s)	74, 677
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	996, 1120
BfmI	CTRYAG	1 cut(s)	184
BisI	GCNGC	3 cut(s)	354, 520, 691
BlpI	GCTNAGC	2 cut(s)	264, 472
BlsI	GCNGC	3 cut(s)	355, 521, 692
Bme1390I	CCNGG	2 cut(s)	74, 677
Bme18I	GGWCC	1 cut(s)	865
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmgT120I	GGNCC	3 cut(s)	214, 215, 865
BmiI	GGNNCC	5 cut(s)	105, 216, 721, 866, 867
BmrFI	CCNGG	2 cut(s)	74, 677
BmsI	GCATC	4 cut(s)	353, 691, 767, 886
Bpu10I	CCTNAGC	1 cut(s)	859
Bpu1102I	GCTNAGC	2 cut(s)	264, 472
Bpu14I	TTCGAA	1 cut(s)	364
BpuEI	CTTGAG	3 cut(s)	605, 1089, 1118
BsaAI	YACGTR	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	73, 676
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse1I	ACTGG	1 cut(s)	567
Bse21I	CCTNAGG	1 cut(s)	210
Bse3DI	GCAATG	2 cut(s)	241, 529
BseBI	CCWGG	2 cut(s)	74, 677
BseDI	CCNNGG	2 cut(s)	73, 676
BseGI	GGATG	4 cut(s)	519, 758, 901, 991
BseMI	GCAATG	2 cut(s)	241, 529
BseMII	CTCAG	6 cut(s)	224, 255, 566, 623, 873, 1050
BseNI	ACTGG	1 cut(s)	567
BseSI	GKGCMC	3 cut(s)	108, 218, 394
BseXI	GCAGC	3 cut(s)	365, 531, 677
BseYI	CCCAGC	2 cut(s)	621, 899
BsgI	GTGCAG	2 cut(s)	372, 676
BshFI	GGCC	4 cut(s)	216, 240, 675, 1004
BshNI	GGYRCC	2 cut(s)	103, 719
BsiHKAI	GWGCWC	4 cut(s)	59, 394, 804, 937
BslFI	GGGAC	3 cut(s)	174, 878, 995
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	3 cut(s)	174, 878, 995
BsnI	GGCC	4 cut(s)	216, 240, 675, 1004
Bsp119I	TTCGAA	1 cut(s)	364
Bsp120I	GGGCCC	1 cut(s)	214
Bsp1286I	GDGCHC	7 cut(s)	59, 108, 218, 394, 804, 860, 937
Bsp143I	GATC	3 cut(s)	728, 916, 1116
Bsp1720I	GCTNAGC	2 cut(s)	264, 472
BspANI	GGCC	4 cut(s)	216, 240, 675, 1004
BspCNI	CTCAG	6 cut(s)	223, 256, 565, 624, 872, 1049
BspLI	GGNNCC	5 cut(s)	105, 216, 721, 866, 867
BspPI	GGATC	2 cut(s)	736, 924
BspT104I	TTCGAA	1 cut(s)	364
BspT107I	GGYRCC	2 cut(s)	103, 719
BsrDI	GCAATG	2 cut(s)	241, 529
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	2 cut(s)	73, 676
BssMI	GATC	3 cut(s)	728, 916, 1116
Bst2UI	CCWGG	2 cut(s)	74, 677
Bst4CI	ACNGT	2 cut(s)	188, 436
Bst6I	CTCTTC	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	261, 1024
BstDEI	CTNAG	8 cut(s)	210, 264, 472, 552, 632, 859, 1036, 1081
BstF5I	GGATG	4 cut(s)	519, 758, 901, 991
BstHHI	GCGC	1 cut(s)	642
BstKTI	GATC	3 cut(s)	731, 919, 1119
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	3 cut(s)	728, 916, 1116
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 103, 265, 350, 1046
BstNI	CCWGG	2 cut(s)	74, 677
BstSCI	CCNGG	2 cut(s)	72, 675
BstSFI	CTRYAG	1 cut(s)	184
BstSLI	GKGCMC	3 cut(s)	108, 218, 394
BstV1I	GCAGC	3 cut(s)	365, 531, 677
BstX2I	RGATCY	1 cut(s)	728
BstYI	RGATCY	1 cut(s)	728
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	4 cut(s)	216, 240, 675, 1004
BtsCI	GGATG	4 cut(s)	519, 758, 901, 991
BtsIMutI	CAGTG	1 cut(s)	1024
Cac8I	GCNNGC	2 cut(s)	261, 1024
CfoI	GCGC	1 cut(s)	642
Cfr13I	GGNCC	3 cut(s)	214, 215, 865
CviAII	CATG	3 cut(s)	13, 403, 951
DdeI	CTNAG	8 cut(s)	210, 264, 472, 552, 632, 859, 1036, 1081
DpnI	GATC	3 cut(s)	730, 918, 1118
DpnII	GATC	3 cut(s)	728, 916, 1116
DriI	GACNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	458
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	458
Ecl136II	GAGCTC	1 cut(s)	802
Eco147I	AGGCCT	1 cut(s)	1004
Eco24I	GRGCYC	3 cut(s)	218, 804, 860
Eco32I	GATATC	1 cut(s)	1072
Eco47I	GGWCC	1 cut(s)	865
Eco53kI	GAGCTC	1 cut(s)	802
Eco57I	CTGAAG	2 cut(s)	437, 1035
Eco81I	CCTNAGG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	802
EcoO109I	RGGNCCY	2 cut(s)	214, 865
EcoRI	GAATTC	1 cut(s)	360
EcoRII	CCWGG	2 cut(s)	72, 675
EcoRV	GATATC	1 cut(s)	1072
EcoT22I	ATGCAT	2 cut(s)	346, 760
EcoT38I	GRGCYC	3 cut(s)	218, 804, 860
FaeI	CATG	3 cut(s)	16, 406, 954
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	3 cut(s)	174, 878, 995
FatI	CATG	3 cut(s)	12, 402, 950
Fnu4HI	GCNGC	3 cut(s)	354, 520, 691
FokI	GGATG	4 cut(s)	526, 745, 908, 978
FriOI	GRGCYC	3 cut(s)	218, 804, 860
Fsp4HI	GCNGC	3 cut(s)	354, 520, 691
FspBI	CTAG	2 cut(s)	996, 1120
FspI	TGCGCA	1 cut(s)	641
GlaI	GCGC	1 cut(s)	641
GluI	GCNGC	3 cut(s)	354, 520, 691
GsaI	CCCAGC	2 cut(s)	625, 903
HaeIII	GGCC	4 cut(s)	216, 240, 675, 1004
HhaI	GCGC	1 cut(s)	642
Hin1II	CATG	3 cut(s)	16, 406, 954
Hin6I	GCGC	1 cut(s)	640
HinP1I	GCGC	1 cut(s)	640
HincII	GTYRAC	3 cut(s)	181, 202, 841
HindII	GTYRAC	3 cut(s)	181, 202, 841
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	3 cut(s)	128, 421, 821
Hpy166II	GTNNAC	4 cut(s)	181, 202, 392, 841
Hpy188I	TCNGA	3 cut(s)	139, 319, 1054
Hpy8I	GTNNAC	4 cut(s)	181, 202, 392, 841
HpyAV	CCTTC	2 cut(s)	219, 652
HpyCH4III	ACNGT	2 cut(s)	188, 436
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	8 cut(s)	234, 344, 353, 392, 596, 693, 704, 758
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 103, 265, 350, 1046
HpyF3I	CTNAG	8 cut(s)	210, 264, 472, 552, 632, 859, 1036, 1081
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	3 cut(s)	16, 406, 954
HspAI	GCGC	1 cut(s)	640
KflI	GGGWCCC	1 cut(s)	865
Kzo9I	GATC	3 cut(s)	728, 916, 1116
LmnI	GCTCC	2 cut(s)	650, 940
Lsp1109I	GCAGC	3 cut(s)	365, 531, 677
LweI	GCATC	4 cut(s)	353, 691, 767, 886
MaeI	CTAG	2 cut(s)	996, 1120
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	2 cut(s)	1076, 1108
MalI	GATC	3 cut(s)	730, 918, 1118
MboI	GATC	3 cut(s)	728, 916, 1116
MboII	GAAGA	3 cut(s)	430, 475, 723
MflI	RGATCY	1 cut(s)	728
MhlI	GDGCHC	7 cut(s)	59, 108, 218, 394, 804, 860, 937
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	8 cut(s)	219, 372, 561, 580, 627, 994, 1015, 1113
Mph1103I	ATGCAT	2 cut(s)	346, 760
MseI	TTAA	5 cut(s)	488, 534, 708, 771, 1013
MslI	CAYNNNNRTG	1 cut(s)	996
MspA1I	CMGCKG	1 cut(s)	415
MspR9I	CCNGG	2 cut(s)	74, 677
MvaI	CCWGG	2 cut(s)	74, 677
MwoI	GCNNNNNNNGC	5 cut(s)	88, 103, 265, 350, 1046
NdeII	GATC	3 cut(s)	728, 916, 1116
NlaIII	CATG	3 cut(s)	16, 406, 954
NlaIV	GGNNCC	5 cut(s)	105, 216, 721, 866, 867
NmuCI	GTSAC	2 cut(s)	1076, 1108
NsbI	TGCGCA	1 cut(s)	641
NsiI	ATGCAT	2 cut(s)	346, 760
NspV	TTCGAA	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	1004
PfeI	GAWTC	2 cut(s)	421, 821
PkrI	GCNGC	3 cut(s)	355, 521, 692
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Ppu21I	YACGTR	1 cut(s)	395
PpuMI	RGGWCCY	1 cut(s)	865
PsiI	TTATAA	1 cut(s)	1044
Psp124BI	GAGCTC	1 cut(s)	804
Psp5II	RGGWCCY	1 cut(s)	865
Psp6I	CCWGG	2 cut(s)	72, 675
PspFI	CCCAGC	2 cut(s)	621, 899
PspGI	CCWGG	2 cut(s)	72, 675
PspN4I	GGNNCC	5 cut(s)	105, 216, 721, 866, 867
PspOMI	GGGCCC	1 cut(s)	214
PspPI	GGNCC	3 cut(s)	214, 215, 865
PspPPI	RGGWCCY	1 cut(s)	865
PsuI	RGATCY	1 cut(s)	728
PvuII	CAGCTG	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	996
SacI	GAGCTC	1 cut(s)	804
SaqAI	TTAA	5 cut(s)	488, 534, 708, 771, 1013
SatI	GCNGC	3 cut(s)	354, 520, 691
Sau3AI	GATC	3 cut(s)	728, 916, 1116
Sau96I	GGNCC	3 cut(s)	214, 215, 865
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	74, 677
SduI	GDGCHC	7 cut(s)	59, 108, 218, 394, 804, 860, 937
SfaNI	GCATC	4 cut(s)	353, 691, 767, 886
SfcI	CTRYAG	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	364
SinI	GGWCC	1 cut(s)	865
SmiMI	CAYNNNNRTG	1 cut(s)	996
SmlI	CTYRAG	3 cut(s)	584, 1097, 1104
SmoI	CTYRAG	3 cut(s)	584, 1097, 1104
SseBI	AGGCCT	1 cut(s)	1004
SspMI	CTAG	2 cut(s)	996, 1120
SstI	GAGCTC	1 cut(s)	804
StuI	AGGCCT	1 cut(s)	1004
StyD4I	CCNGG	2 cut(s)	72, 675
TaaI	ACNGT	2 cut(s)	188, 436
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	2 cut(s)	364, 450
TfiI	GAWTC	2 cut(s)	421, 821
Tru1I	TTAA	5 cut(s)	488, 534, 708, 771, 1013
Tru9I	TTAA	5 cut(s)	488, 534, 708, 771, 1013
TscAI	CASTG	1 cut(s)	1024
TseFI	GTSAC	2 cut(s)	1076, 1108
TseI	GCWGC	3 cut(s)	353, 519, 690
Tsp45I	GTSAC	2 cut(s)	1076, 1108
TspDTI	ATGAA	5 cut(s)	29, 106, 820, 864, 980
TspGWI	ACGGA	1 cut(s)	999
TspRI	CASTG	1 cut(s)	1024
VneI	GTGCAC	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	865
XapI	RAATTY	2 cut(s)	360, 827
XspI	CTAG	2 cut(s)	996, 1120
Zsp2I	ATGCAT	2 cut(s)	346, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.