Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

121139 .. 126806

Gene Structure 5668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0001900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGCTTCACAGCACCGTCGTTTCCCCCAAGGCCCTTCAACTCAATCTCGGCTTCTCTTCATTTCTAGCCACAAACCAGAACCAGAGCAGGAGGAGGAGGAGGAGGAGGATCATCTTTTGCTCACAAACCAGAGATGGTTCTGTGCGTGGTGGAGTTAAGACTAGCAGCACTACCAGTAGTAATGGATGGAGACAATCTATGTTTGTCGGTACGAAACCTGCCCTTGAAGATTCCATTCTGAGTGTCAGTGGTAAACATGTGTTGACAGACGTGCCTCCCAATGTGGTCTTCACACCAATTCCCTACTCATCGGCAGCATTCCTTGGCGCCACTTCTCAAAATGCTACTTCACAATCACGCCATGTTTTTAAGCTCGGAGTCTTACGTGATGTCAGATTATTAAGTCTTTTTAGATTTAAACTTTGGTGGATGATACCACGAGTGGGCAGTACAGGAAGTGAAATCCCTGTGGAAACTCAGCTGTTGCTCCTAGAAGCAAAGGAGGAGGAGGGAAAGGAGGATAGTACATCTTATATCTTATTCTTGCCAGTTCTGGATGGTGAATTTAGAAGCAGCTTGCAGGGAAATACATCCAATGAACTTGAGTTTTGCGTCGAAAGTGGTGACCCCGCTATAGTTGCCTCAGAATCCCTAAAAGCAGTTTTTGTGAATTGTGGGAACCATCCTTTCGATCTGGTGAACGAATCTATGAAGACTTTGGCGAAGCATTATGGAAGCTTTGCTCTTAGAGAAACGAAACAGATGCCTGGAATGCTGGATTGTTTTGGCTGGTGTACTTGGGATGCCTTTTATCAAGGAGTTAACCCTAAAGGAATTAGAGACGGCCTCAGAAGTTTATCAGAAGGAGGTACTCCAGCTAAGTTTTTGATAATCGATGATGGGTGGCAAGATACATCAAATGAGTTCCAAAAAGAAGGGGAGCCATTTGTTGAAGGGACACAGTTTGGAGGCAGATTAAATAGCATTGAAGAAAATAACAAGTTTCGCAGCACAACCAATATGGTTGATAGTGACAAACCAAGTGGTCTCAAGGATTTTGTTTCTGAGATCAAGAATTCCTTTGGCCTTAGGTATGTGTATGTATGGCATGCCCTTTTGGGATATTGGGGAGGGCTTGTTCCAAATGCTCCAGGAACTAAAAAGTATAACACTAAGTTCAGACACCCAGTACAGTCACCTGGAAATTTGTCAAATATGAGGGATGGAGCTATGGATAGTATGGAGAAATATGGTGTTGGTGTAATAGATCCTGCAAAGGCATATCAATTTTATGATGATCTACACGGATATCTTGTTTCACAGGATGTAGATGGTGTTAAGGTTGATGTTCAGAACATACTGGAGACAGTTTCAGCAGGTTTAGGAGGGCGAGTCTCTCTAACTAGACGATTCCAACAGGCACTTGAGAAGTCCATAGCCACTCATTTCCAAGATAACAGCATAATCTGCTGCATGGGCCAAAGCACAGACTCCATTTACCATTCAAAAAGAAGTGCTATTACTCGAGCATCTGATGATTACTACCCAAAAAACCCAACAACACAGACACTGCACATTGCTGCAGTGGCTTTCAACAGCATATTCCTTGGTGAAGTTTTTGTCCCAGATTGGGACATGTTCTATAGCCGGCATGAGGCAGCTGAGTTCCATGCTGCTGCTAGAGCTGTGGGAGGTTGCGGAGTCTATGTAAGTGACAAACCTGGCCAGCATGATTTCGAGATACTTAAAAGGCTTGTTCTTCCTGATGGAACAGTTCTCAGAGCTAGATATCCTGGGAGGCCATCACGGGATTGTTTATTTGTTGATCCAGTTATGGACGGGAAGAGTCTTCTGAAAATATGGAATTTGAACAAATGCAACGGAGTTATAGGCATTTTCAATTGCCAAGGAGCAGGAAGCTGGCCTTGTCTGGAACATATCGTCCAGGTAAAAGCTAGTGAGGAGCTATCTGGGAAGGTCTCTCCAGCCGATATCGAGTATTTTGAAAAGGTATCTGGAAAGCTTTGGACTGGAGATTGTGCAGTCTATTCCTTCAAACAAGGGTATCTGTCTCGTTTACCGAAGGACAAGTCAGTTGATGTCACATTACAAATTCTCCAATGCGATGTGTTTACTGTATCCCCTATTAAGGTTTACAAGCAAAATATTCAATTTGCACCAATTGGATTATTGAACATGTACAATTCCGGTGGAGCTGTTGACAGTATTGACTTGTTCAGTGATGCCTCTAGTTGTGTTATACACATCAAGGGAAGAGGGGCTGGTAGCTTTGGAGCGTACTCAAGTTCAAAGCCCAAATCTTGCTCGGTGAACTCGAAAGATGAGGGATTTGAATTCAGAGGTGATGACAATCTTCTGACTGTGACAATTCCTGCCGCAACTAGTTCTTGGAACATTAGTTTCTCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

810

Amino Acids

89.41

Weight (kDa)

7.21

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raffinose_syn	PF05691	76 - 796	1.9e-263	Raffinose synthase or seed imbibition protein Sip1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	226, 1367
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	3 cut(s)	630, 1698, 2397
AclWI	GGATC	3 cut(s)	116, 1262, 1820
AcoI	YGGCCR	1 cut(s)	1723
AcsI	RAATTY	6 cut(s)	563, 1075, 1204, 1864, 2112, 2354
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	8 cut(s)	211, 451, 526, 796, 871, 1191, 2201, 2300
AfiI	CCNNNNNNNGG	4 cut(s)	443, 1630, 1654, 2149
AflIII	ACRYGT	3 cut(s)	256, 1635, 2196
AhlI	ACTAGT	1 cut(s)	2402
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	6 cut(s)	766, 1150, 1198, 1720, 1792, 1944
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AloI	GAACNNNNNNTCC	4 cut(s)	1122, 1154, 1926, 1958
Alw26I	GTCTC	7 cut(s)	184, 834, 1052, 1358, 1399, 1984, 2076
AlwI	GGATC	3 cut(s)	116, 1262, 1820
AlwNI	CAGNNNCTG	1 cut(s)	1570
Ama87I	CYCGRG	1 cut(s)	1524
AoxI	GGCC	7 cut(s)	30, 844, 1084, 1477, 1723, 1799, 1922
ApeKI	GCWGC	9 cut(s)	165, 314, 573, 1008, 1470, 1580, 1658, 1673, 1676
ApoI	RAATTY	6 cut(s)	563, 1075, 1204, 1864, 2112, 2354
ArsI	GACNNNNNNTTYG	2 cut(s)	2075, 2107
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	31, 1477
AsuHPI	GGTGA	7 cut(s)	572, 635, 709, 1188, 1622, 2341, 2375
AvaI	CYCGRG	1 cut(s)	1524
AxyI	CCTNAGG	1 cut(s)	1088
BaeI	ACNNNNGTAYC	2 cut(s)	2048, 2081
BalI	TGGCCA	1 cut(s)	1725
BanI	GGYRCC	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	1504, 1536
BauI	CACGAG	1 cut(s)	438
BbsI	GAAGAC	3 cut(s)	280, 719, 1841
BbvI	GCAGC	9 cut(s)	177, 326, 585, 1020, 1457, 1567, 1660, 1663, 1670
BccI	CCATC	9 cut(s)	128, 180, 551, 690, 893, 1217, 1325, 1760, 1810
BceAI	ACGGC	1 cut(s)	859
BcgI	CGANNNNNNTGC	2 cut(s)	745, 779
BciT130I	CCWGG	6 cut(s)	768, 1152, 1200, 1722, 1794, 1946
BciVI	GTATCC	1 cut(s)	2149
BcoDI	GTCTC	7 cut(s)	184, 834, 1052, 1358, 1399, 1984, 2076
BcuI	ACTAGT	1 cut(s)	2402
BfaI	CTAG	9 cut(s)	65, 162, 491, 1404, 1680, 1785, 1956, 2250, 2403
BfmI	CTRYAG	3 cut(s)	633, 1581, 1642
BfoI	RGCGCY	1 cut(s)	330
BfuAI	ACCTGC	2 cut(s)	226, 1367
BfuI	GTATCC	1 cut(s)	2149
Bme1390I	CCNGG	6 cut(s)	768, 1152, 1200, 1722, 1794, 1946
BmeT110I	CYCGRG	1 cut(s)	1524
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	31, 1477
BmiI	GGNNCC	3 cut(s)	328, 680, 942
BmrFI	CCNGG	6 cut(s)	768, 1152, 1200, 1722, 1794, 1946
BmrI	ACTGGG	1 cut(s)	1181
BmsI	GCATC	4 cut(s)	753, 793, 1538, 2233
BmuI	ACTGGG	1 cut(s)	1181
BpiI	GAAGAC	3 cut(s)	280, 719, 1841
BplI	GAGNNNNNCTC	2 cut(s)	831, 863
BpmI	CTGGAG	5 cut(s)	858, 1134, 1382, 1968, 2052
BpuEI	CTTGAG	4 cut(s)	623, 1034, 1445, 2287
Bsa29I	ATCGAT	1 cut(s)	894
BsaAI	YACGTR	1 cut(s)	386
BsaBI	GATNNNNATC	1 cut(s)	2370
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	2 cut(s)	1052, 1984
BsaJI	CCNNGG	5 cut(s)	27, 322, 1606, 1793, 1906
BsaWI	WCCGGW	1 cut(s)	2207
BsaXI	ACNNNNNCTCC	8 cut(s)	1122, 1152, 1377, 1407, 1692, 1722, 2100, 2130
Bsc4I	CCNNNNNNNGG	4 cut(s)	443, 1630, 1654, 2149
Bse118I	RCCGGY	1 cut(s)	1647
Bse1I	ACTGG	6 cut(s)	174, 548, 1187, 1365, 1829, 2035
Bse21I	CCTNAGG	1 cut(s)	1088
Bse3DI	GCAATG	1 cut(s)	1575
Bse8I	GATNNNNATC	1 cut(s)	2370
BseBI	CCWGG	6 cut(s)	768, 1152, 1200, 1722, 1794, 1946
BseCI	ATCGAT	1 cut(s)	894
BseDI	CCNNGG	5 cut(s)	27, 322, 1606, 1793, 1906
BseGI	GGATG	8 cut(s)	191, 435, 562, 590, 682, 808, 1228, 1330
BseJI	GATNNNNATC	1 cut(s)	2370
BseLI	CCNNNNNNNGG	4 cut(s)	443, 1630, 1654, 2149
BseMI	GCAATG	1 cut(s)	1575
BseMII	CTCAG	7 cut(s)	230, 491, 657, 862, 1056, 1653, 1792
BseNI	ACTGG	6 cut(s)	174, 548, 1187, 1365, 1829, 2035
BseRI	GAGGAG	8 cut(s)	106, 109, 112, 115, 118, 518, 521, 1976
BseXI	GCAGC	9 cut(s)	177, 326, 585, 1020, 1457, 1567, 1660, 1663, 1670
BsgI	GTGCAG	2 cut(s)	1556, 2061
BshFI	GGCC	7 cut(s)	32, 846, 1086, 1479, 1725, 1801, 1924
BshNI	GGYRCC	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	894
BsiHKCI	CYCGRG	1 cut(s)	1524
BsiSI	CCGG	2 cut(s)	1648, 2208
BslFI	GGGAC	3 cut(s)	970, 1607, 1646
BslI	CCNNNNNNNGG	4 cut(s)	443, 1630, 1654, 2149
BsmAI	GTCTC	7 cut(s)	184, 834, 1052, 1358, 1399, 1984, 2076
BsmBI	CGTCTC	1 cut(s)	834
BsmFI	GGGAC	3 cut(s)	970, 1607, 1646
BsmI	GAATGC	2 cut(s)	317, 777
BsnI	GGCC	7 cut(s)	32, 846, 1086, 1479, 1725, 1801, 1924
Bso31I	GGTCTC	2 cut(s)	1052, 1984
BsoBI	CYCGRG	1 cut(s)	1524
Bsp1407I	TGTACA	1 cut(s)	2199
Bsp143I	GATC	6 cut(s)	108, 691, 1068, 1267, 1297, 1825
BspACI	CCGC	3 cut(s)	630, 1698, 2397
BspANI	GGCC	7 cut(s)	32, 846, 1086, 1479, 1725, 1801, 1924
BspCNI	CTCAG	7 cut(s)	231, 490, 656, 861, 1057, 1654, 1791
BspDI	ATCGAT	1 cut(s)	894
BspLI	GGNNCC	3 cut(s)	328, 680, 942
BspMAI	CTGCAG	1 cut(s)	1585
BspMI	ACCTGC	2 cut(s)	226, 1367
BspPI	GGATC	3 cut(s)	116, 1262, 1820
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	2 cut(s)	1052, 1984
BsrDI	GCAATG	1 cut(s)	1575
BsrFI	RCCGGY	1 cut(s)	1647
BsrGI	TGTACA	1 cut(s)	2199
BsrI	ACTGG	6 cut(s)	174, 548, 1187, 1365, 1829, 2035
BssAI	RCCGGY	1 cut(s)	1647
BssECI	CCNNGG	5 cut(s)	27, 322, 1606, 1793, 1906
BssMI	GATC	6 cut(s)	108, 691, 1068, 1267, 1297, 1825
BssNI	GRCGYC	1 cut(s)	327
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	4 cut(s)	27, 322, 1606, 1906
Bst2BI	CACGAG	1 cut(s)	438
Bst2UI	CCWGG	6 cut(s)	768, 1152, 1200, 1722, 1794, 1946
Bst4CI	ACNGT	8 cut(s)	16, 963, 1194, 1369, 1774, 2137, 2225, 2383
Bst6I	CTCTTC	3 cut(s)	61, 1838, 2269
BstACI	GRCGYC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	1467
BstAUI	TGTACA	1 cut(s)	2199
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	5 cut(s)	578, 1110, 1649, 1727, 1922
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	8 cut(s)	191, 435, 562, 590, 682, 808, 1228, 1330
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	6 cut(s)	111, 694, 1071, 1270, 1300, 1828
BstMAI	GTCTC	7 cut(s)	184, 834, 1052, 1358, 1399, 1984, 2076
BstMBI	GATC	6 cut(s)	108, 691, 1068, 1267, 1297, 1825
BstMWI	GCNNNNNNNGC	6 cut(s)	638, 772, 1467, 1476, 1586, 1682
BstNI	CCWGG	6 cut(s)	768, 1152, 1200, 1722, 1794, 1946
BstNSI	RCATGY	4 cut(s)	260, 1112, 1639, 2200
BstPI	GGTNACC	1 cut(s)	623
BstSCI	CCNGG	6 cut(s)	766, 1150, 1198, 1720, 1792, 1944
BstSFI	CTRYAG	3 cut(s)	633, 1581, 1642
BstV1I	GCAGC	9 cut(s)	177, 326, 585, 1020, 1457, 1567, 1660, 1663, 1670
BstV2I	GAAGAC	3 cut(s)	280, 719, 1841
BstX2I	RGATCY	1 cut(s)	1267
BstYI	RGATCY	1 cut(s)	1267
Bsu15I	ATCGAT	1 cut(s)	894
Bsu36I	CCTNAGG	1 cut(s)	1088
BsuI	GTATCC	1 cut(s)	2149
BsuRI	GGCC	7 cut(s)	32, 846, 1086, 1479, 1725, 1801, 1924
BsuTUI	ATCGAT	1 cut(s)	894
BtgZI	GCGATG	1 cut(s)	2139
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	8 cut(s)	191, 435, 562, 590, 682, 808, 1228, 1330
BtsI	GCAGTG	2 cut(s)	1568, 1590
BtsIMutI	CAGTG	4 cut(s)	253, 1568, 1590, 2245
BveI	ACCTGC	2 cut(s)	226, 1367
Cac8I	GCNNGC	5 cut(s)	578, 1110, 1649, 1727, 1922
CaiI	CAGNNNCTG	1 cut(s)	1570
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	1647
Cfr13I	GGNCC	2 cut(s)	31, 1477
ClaI	ATCGAT	1 cut(s)	894
CseI	GACGC	1 cut(s)	601
Csp6I	GTAC	8 cut(s)	210, 450, 525, 795, 870, 1190, 2200, 2299
CspCI	CAANNNNNGTGG	4 cut(s)	1024, 1059, 2191, 2226
CviAII	CATG	9 cut(s)	257, 362, 1109, 1474, 1636, 1652, 1670, 1730, 2197
CviQI	GTAC	8 cut(s)	210, 450, 525, 795, 870, 1190, 2200, 2299
DinI	GGCGCC	1 cut(s)	328
DpnI	GATC	6 cut(s)	110, 693, 1070, 1269, 1299, 1827
DpnII	GATC	6 cut(s)	108, 691, 1068, 1267, 1297, 1825
DraI	TTTAAA	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	1723
Eam1104I	CTCTTC	3 cut(s)	61, 1838, 2269
EarI	CTCTTC	3 cut(s)	61, 1838, 2269
Eco130I	CCWWGG	4 cut(s)	27, 322, 1606, 1906
Eco31I	GGTCTC	2 cut(s)	1052, 1984
Eco32I	GATATC	3 cut(s)	1310, 1790, 1993
Eco81I	CCTNAGG	1 cut(s)	1088
Eco88I	CYCGRG	1 cut(s)	1524
Eco91I	GGTNACC	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	623
EcoRI	GAATTC	2 cut(s)	1075, 2354
EcoRII	CCWGG	6 cut(s)	766, 1150, 1198, 1720, 1792, 1944
EcoRV	GATATC	3 cut(s)	1310, 1790, 1993
EcoT14I	CCWWGG	4 cut(s)	27, 322, 1606, 1906
EgeI	GGCGCC	1 cut(s)	328
EheI	GGCGCC	1 cut(s)	328
ErhI	CCWWGG	4 cut(s)	27, 322, 1606, 1906
Esp3I	CGTCTC	1 cut(s)	834
FaeI	CATG	9 cut(s)	260, 365, 1112, 1477, 1639, 1655, 1673, 1733, 2200
FalI	AAGNNNNNCTT	4 cut(s)	1064, 1096, 1909, 1941
FaqI	GGGAC	3 cut(s)	970, 1607, 1646
FatI	CATG	9 cut(s)	256, 361, 1108, 1473, 1635, 1651, 1669, 1729, 2196
FauI	CCCGC	1 cut(s)	637
FokI	GGATG	8 cut(s)	198, 442, 569, 577, 669, 815, 1235, 1337
FspBI	CTAG	9 cut(s)	65, 162, 491, 1404, 1680, 1785, 1956, 2250, 2403
GlaI	GCGC	1 cut(s)	328
GsuI	CTGGAG	5 cut(s)	858, 1134, 1382, 1968, 2052
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	7 cut(s)	32, 846, 1086, 1479, 1725, 1801, 1924
HapII	CCGG	2 cut(s)	1648, 2208
HgaI	GACGC	1 cut(s)	601
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	9 cut(s)	260, 365, 1112, 1477, 1639, 1655, 1673, 1733, 2200
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	3 cut(s)	264, 823, 2221
HindII	GTYRAC	3 cut(s)	264, 823, 2221
HindIII	AAGCTT	2 cut(s)	736, 2021
HinfI	GANTC	9 cut(s)	230, 378, 647, 704, 1392, 1410, 1490, 1701, 1846
HpaI	GTTAAC	1 cut(s)	823
HpaII	CCGG	2 cut(s)	1648, 2208
HphI	GGTGA	7 cut(s)	572, 635, 709, 1188, 1622, 2341, 2375
Hpy188III	TCNNGA	6 cut(s)	554, 1072, 1738, 1763, 1931, 2016
Hpy99I	CGWCG	2 cut(s)	20, 617
HpyAV	CCTTC	7 cut(s)	44, 857, 929, 947, 1969, 2062, 2077
HpyCH4III	ACNGT	8 cut(s)	16, 963, 1194, 1369, 1774, 2137, 2225, 2383
HpyCH4IV	ACGT	2 cut(s)	270, 385
HpyCH4V	TGCA	8 cut(s)	580, 1274, 1473, 1573, 1583, 1878, 2042, 2177
HpyF10VI	GCNNNNNNNGC	6 cut(s)	638, 772, 1467, 1476, 1586, 1682
HpySE526I	ACGT	2 cut(s)	270, 385
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	9 cut(s)	260, 365, 1112, 1477, 1639, 1655, 1673, 1733, 2200
HspAI	GCGC	1 cut(s)	327
KasI	GGCGCC	1 cut(s)	326
KroI	GCCGGC	1 cut(s)	1647
KroNI	GCCGGC	1 cut(s)	1649
KspAI	GTTAAC	1 cut(s)	823
Kzo9I	GATC	6 cut(s)	108, 691, 1068, 1267, 1297, 1825
LmnI	GCTCC	8 cut(s)	492, 940, 1153, 1226, 1910, 1963, 2213, 2294
Lsp1109I	GCAGC	9 cut(s)	177, 326, 585, 1020, 1457, 1567, 1660, 1663, 1670
LweI	GCATC	4 cut(s)	753, 793, 1538, 2233
MaeI	CTAG	9 cut(s)	65, 162, 491, 1404, 1680, 1785, 1956, 2250, 2403
MaeII	ACGT	2 cut(s)	270, 385
MaeIII	GTNAC	6 cut(s)	623, 1031, 1194, 1712, 2101, 2383
MalI	GATC	6 cut(s)	110, 693, 1070, 1269, 1299, 1827
MboI	GATC	6 cut(s)	108, 691, 1068, 1267, 1297, 1825
MfeI	CAATTG	2 cut(s)	1900, 2181
MflI	RGATCY	1 cut(s)	1267
MlsI	TGGCCA	1 cut(s)	1725
MluNI	TGGCCA	1 cut(s)	1725
Mly113I	GGCGCC	1 cut(s)	327
MlyI	GAGTC	5 cut(s)	387, 1401, 1484, 1710, 1855
MmeI	TCCRAC	1 cut(s)	1438
Mox20I	TGGCCA	1 cut(s)	1725
MroNI	GCCGGC	1 cut(s)	1647
MscI	TGGCCA	1 cut(s)	1725
MseI	TTAA	9 cut(s)	156, 369, 401, 417, 822, 977, 1338, 1746, 2148
Msp20I	TGGCCA	1 cut(s)	1725
MspA1I	CMGCKG	2 cut(s)	481, 1661
MspI	CCGG	2 cut(s)	1648, 2208
MspR9I	CCNGG	6 cut(s)	768, 1152, 1200, 1722, 1794, 1946
MunI	CAATTG	2 cut(s)	1900, 2181
Mva1269I	GAATGC	2 cut(s)	317, 777
MvaI	CCWGG	6 cut(s)	768, 1152, 1200, 1722, 1794, 1946
MwoI	GCNNNNNNNGC	6 cut(s)	638, 772, 1467, 1476, 1586, 1682
NaeI	GCCGGC	1 cut(s)	1649
NarI	GGCGCC	1 cut(s)	327
NdeII	GATC	6 cut(s)	108, 691, 1068, 1267, 1297, 1825
NgoMIV	GCCGGC	1 cut(s)	1647
NlaIII	CATG	9 cut(s)	260, 365, 1112, 1477, 1639, 1655, 1673, 1733, 2200
NlaIV	GGNNCC	3 cut(s)	328, 680, 942
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	6 cut(s)	623, 1031, 1194, 1712, 2101, 2383
NspI	RCATGY	4 cut(s)	260, 1112, 1639, 2200
PaeI	GCATGC	1 cut(s)	1112
PaeR7I	CTCGAG	1 cut(s)	1524
PciI	ACATGT	3 cut(s)	256, 1635, 2196
PcsI	WCGNNNNNNNCGW	1 cut(s)	2333
PctI	GAATGC	2 cut(s)	317, 777
PdiI	GCCGGC	1 cut(s)	1649
PfeI	GAWTC	4 cut(s)	230, 647, 704, 1410
PfoI	TCCNGGA	1 cut(s)	1150
PleI	GAGTC	5 cut(s)	386, 1400, 1484, 1709, 1854
PluTI	GGCGCC	1 cut(s)	330
PpsI	GAGTC	5 cut(s)	386, 1400, 1484, 1709, 1854
Ppu21I	YACGTR	1 cut(s)	386
PscI	ACATGT	3 cut(s)	256, 1635, 2196
Psp6I	CCWGG	6 cut(s)	766, 1150, 1198, 1720, 1792, 1944
PspEI	GGTNACC	1 cut(s)	623
PspGI	CCWGG	6 cut(s)	766, 1150, 1198, 1720, 1792, 1944
PspN4I	GGNNCC	3 cut(s)	328, 680, 942
PspPI	GGNCC	2 cut(s)	31, 1477
PspXI	VCTCGAGB	1 cut(s)	1524
PstI	CTGCAG	1 cut(s)	1585
PstNI	CAGNNNCTG	1 cut(s)	1570
PsuI	RGATCY	1 cut(s)	1267
PvuII	CAGCTG	2 cut(s)	481, 1661
RsaI	GTAC	8 cut(s)	211, 451, 526, 796, 871, 1191, 2201, 2300
RsaNI	GTAC	8 cut(s)	210, 450, 525, 795, 870, 1190, 2200, 2299
SaqAI	TTAA	9 cut(s)	156, 369, 401, 417, 822, 977, 1338, 1746, 2148
Sau3AI	GATC	6 cut(s)	108, 691, 1068, 1267, 1297, 1825
Sau96I	GGNCC	2 cut(s)	31, 1477
SchI	GAGTC	5 cut(s)	387, 1401, 1484, 1710, 1855
ScrFI	CCNGG	6 cut(s)	768, 1152, 1200, 1722, 1794, 1946
SfaNI	GCATC	4 cut(s)	753, 793, 1538, 2233
SfcI	CTRYAG	3 cut(s)	633, 1581, 1642
SfoI	GGCGCC	1 cut(s)	328
Sfr274I	CTCGAG	1 cut(s)	1524
SlaI	CTCGAG	1 cut(s)	1524
SmlI	CTYRAG	5 cut(s)	602, 1049, 1424, 1524, 2302
SmoI	CTYRAG	5 cut(s)	602, 1049, 1424, 1524, 2302
SpeI	ACTAGT	1 cut(s)	2402
SphI	GCATGC	1 cut(s)	1112
SsiI	CCGC	3 cut(s)	630, 1698, 2397
SspDI	GGCGCC	1 cut(s)	326
SspI	AATATT	1 cut(s)	2167
SspMI	CTAG	9 cut(s)	65, 162, 491, 1404, 1680, 1785, 1956, 2250, 2403
StyD4I	CCNGG	6 cut(s)	766, 1150, 1198, 1720, 1792, 1944
StyI	CCWWGG	4 cut(s)	27, 322, 1606, 1906
TaaI	ACNGT	8 cut(s)	16, 963, 1194, 1369, 1774, 2137, 2225, 2383
TaiI	ACGT	2 cut(s)	273, 388
TaqI	TCGA	7 cut(s)	615, 690, 894, 1525, 1737, 1995, 2336
TatI	WGTACW	5 cut(s)	449, 524, 794, 1189, 2199
TauI	GCSGC	1 cut(s)	2399
TfiI	GAWTC	4 cut(s)	230, 647, 704, 1410
Tru1I	TTAA	9 cut(s)	156, 369, 401, 417, 822, 977, 1338, 1746, 2148
Tru9I	TTAA	9 cut(s)	156, 369, 401, 417, 822, 977, 1338, 1746, 2148
TscAI	CASTG	4 cut(s)	253, 1575, 1590, 2245
TseFI	GTSAC	6 cut(s)	623, 1031, 1194, 1712, 2101, 2383
TseI	GCWGC	9 cut(s)	165, 314, 573, 1008, 1470, 1580, 1658, 1673, 1676
Tsp45I	GTSAC	6 cut(s)	623, 1031, 1194, 1712, 2101, 2383
TspDTI	ATGAA	3 cut(s)	48, 612, 725
TspGWI	ACGGA	2 cut(s)	1320, 1896
TspRI	CASTG	4 cut(s)	253, 1575, 1590, 2245
XapI	RAATTY	6 cut(s)	563, 1075, 1204, 1864, 2112, 2354
XceI	RCATGY	4 cut(s)	260, 1112, 1639, 2200
XhoI	CTCGAG	1 cut(s)	1524
XspI	CTAG	9 cut(s)	65, 162, 491, 1404, 1680, 1785, 1956, 2250, 2403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.