Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001889.1

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

30997 .. 35437

Gene Structure 4441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001889.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

atggaggtggtgaccgggaactcattgtttgggaaagtaggaacggaagggatagcggaagcggcgggggttggtttggcttcagtgacatgttcagtggttgctgcttggatatccagtgctcgaatccgagtagggatttgggggattagaaatgaggagttgagtggcagtggcttgaaaaagatgaataggcatggttgtggtggagaggtcggtggtggttatgggtgtagtgctagatctgagttgagttttctgttttctgttagtgcaatggcttgtgggatgaagccttgggtggtggtgattgctctgacttggtttttaagcctgcaagaacattcttcttctgttcatggaaagccacaagtaccttgtttcttcatttttggagactcactggctgataatggcaacgacaacgtgcttgatactttggctaaagtcaattaccagccctatggtatcgacttccctagtggcacagcaaccggaagattcagcaacggtcgaaccaccgtcgatgttctctctgaacttttaggctttgacaactatattccaccatttgcttttgttaatggctctgacatacttaaaggtgtgaactatgcttgtggcgcggcaggaattcgaaaagaaactggcaagcaattgggtgcaagaatcagcatggccagacagttaaagaaccacaagattataatctcacgcattgtcgacatacttgggaagaagagcttagcccaaaagcacttaaacaagtgcttatattcagttggaatgggcagcaatgactacatcaacaattacttcgtgcctcagtattaccacaccagcaaaaaatttaccactgagcaatatgctgaagttctcatcaaccaatattcttgggaaatcctgaagttgtacaagtatggagcaaggaaggtggctttggttggattgggactaataggctgcaccccaagtgcaatttcttcctttggcacaaatgggtcagcatgtgtagacacattgaacattgcagcgcaactgtttaaccaaaggcttgtatcacttgtggacaagctcaacagcaatttgacagatgcaaaattcatctatattaacagctttgaaatgggttctggagatcctgcagctgctggcttcacagtttcgaatgttgggtgttgtgcggtaaatgaagttggtcaatgtaatgttgaccatactccatgcaagaacaggactgagtacgtgttctgggacggattccatcctactgaagccttgaaccgaatcactgcaatcagatcatacaatgcttttaaccctgtagacacttatccaatggatattagtcaccttgttcagctacaaattaataactcagcaactccagctacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

465

Amino Acids

50.18

Weight (kDa)

8.32

Isoelectric Point (pI)

20.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
AccI	GTMKAC	3 cut(s)	723, 1014, 1326
AccII	CGCG	1 cut(s)	626
AciI	CCGC	5 cut(s)	56, 62, 65, 626, 1184
AclWI	GGATC	1 cut(s)	1133
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	3 cut(s)	633, 848, 1100
AcuI	CTGAAG	4 cut(s)	66, 891, 926, 1293
AfaI	GTAC	3 cut(s)	375, 914, 1244
AflIII	ACRYGT	2 cut(s)	89, 1245
AgsI	TTSAA	4 cut(s)	181, 1024, 1124, 1282
AjuI	GAANNNNNNNTTGG	4 cut(s)	923, 955, 964, 996
AluBI	AGCT	6 cut(s)	744, 1075, 1119, 1148, 1363, 1391
AluI	AGCT	6 cut(s)	744, 1075, 1119, 1148, 1363, 1391
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	1133
AlwNI	CAGNNNCTG	1 cut(s)	1151
AoxI	GGCC	1 cut(s)	678
ApeKI	GCWGC	6 cut(s)	104, 792, 963, 1031, 1145, 1148
ApoI	RAATTY	3 cut(s)	633, 848, 1100
AseI	ATTAAT	1 cut(s)	1371
AspLEI	GCGC	2 cut(s)	626, 1036
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	3 cut(s)	22, 319, 1343
AsuII	TTCGAA	2 cut(s)	637, 1166
BalI	TGGCCA	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	6 cut(s)	91, 804, 950, 1043, 1135, 1157
BccI	CCATC	1 cut(s)	1272
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	3 cut(s)	240, 480, 1396
BfmI	CTRYAG	2 cut(s)	1143, 1323
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	8 cut(s)	63, 105, 627, 793, 964, 1032, 1146, 1149
BlpI	GCTNAGC	1 cut(s)	745
BlsI	GCNGC	8 cut(s)	64, 106, 628, 794, 965, 1033, 1147, 1150
Bme1390I	CCNGG	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	1 cut(s)	1084
BpmI	CTGGAG	2 cut(s)	1155, 1371
Bpu1102I	GCTNAGC	1 cut(s)	745
Bpu14I	TTCGAA	2 cut(s)	637, 1166
BpuMI	CCSGG	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	1246
BsaBI	GATNNNNATC	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	494
Bse1I	ACTGG	3 cut(s)	117, 408, 652
Bse3DI	GCAATG	3 cut(s)	282, 802, 1026
Bse8I	GATNNNNATC	1 cut(s)	707
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	2 cut(s)	294, 1264
BseJI	GATNNNNATC	1 cut(s)	707
BseMI	GCAATG	3 cut(s)	282, 802, 1026
BseMII	CTCAG	5 cut(s)	237, 839, 849, 1230, 1392
BseNI	ACTGG	3 cut(s)	117, 408, 652
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	6 cut(s)	91, 804, 950, 1043, 1135, 1157
BsgI	GTGCAG	1 cut(s)	949
Bsh1236I	CGCG	1 cut(s)	626
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	1 cut(s)	680
BsiEI	CGRYCG	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	15, 495
BslFI	GGGAC	2 cut(s)	966, 1268
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	2 cut(s)	966, 1268
BsnI	GGCC	1 cut(s)	680
Bsp119I	TTCGAA	2 cut(s)	637, 1166
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	912
Bsp143I	GATC	3 cut(s)	242, 1138, 1301
Bsp1720I	GCTNAGC	1 cut(s)	745
BspACI	CCGC	5 cut(s)	56, 62, 65, 626, 1184
BspANI	GGCC	1 cut(s)	680
BspCNI	CTCAG	5 cut(s)	238, 838, 850, 1231, 1391
BspFNI	CGCG	1 cut(s)	626
BspMAI	CTGCAG	1 cut(s)	1147
BspPI	GGATC	1 cut(s)	1133
BspQI	GCTCTTC	1 cut(s)	734
BspT104I	TTCGAA	2 cut(s)	637, 1166
BsrDI	GCAATG	3 cut(s)	282, 802, 1026
BsrGI	TGTACA	1 cut(s)	912
BsrI	ACTGG	3 cut(s)	117, 408, 652
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	3 cut(s)	242, 1138, 1301
BssT1I	CCWWGG	1 cut(s)	296
Bst4CI	ACNGT	5 cut(s)	512, 523, 687, 1041, 1162
Bst6I	CTCTTC	1 cut(s)	734
BstAUI	TGTACA	1 cut(s)	912
BstBAI	YACGTR	1 cut(s)	1246
BstBI	TTCGAA	2 cut(s)	637, 1166
BstC8I	GCNNGC	3 cut(s)	335, 653, 1153
BstDEI	CTNAG	6 cut(s)	246, 745, 825, 858, 1239, 1378
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	294, 1264
BstFNI	CGCG	1 cut(s)	626
BstHHI	GCGC	2 cut(s)	626, 1036
BstKTI	GATC	3 cut(s)	245, 1141, 1304
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	3 cut(s)	242, 1138, 1301
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 623, 1388
BstNSI	RCATGY	2 cut(s)	93, 1011
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	2 cut(s)	1143, 1323
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	6 cut(s)	91, 804, 950, 1043, 1135, 1157
BstX2I	RGATCY	2 cut(s)	242, 1138
BstXI	CCANNNNNNTGG	1 cut(s)	464
BstYI	RGATCY	2 cut(s)	242, 1138
BsuRI	GGCC	1 cut(s)	680
BtsCI	GGATG	2 cut(s)	294, 1264
BtsI	GCAGTG	2 cut(s)	178, 1290
BtsIMutI	CAGTG	7 cut(s)	90, 102, 124, 178, 401, 855, 1290
Cac8I	GCNNGC	3 cut(s)	335, 653, 1153
CaiI	CAGNNNCTG	1 cut(s)	1151
CfoI	GCGC	2 cut(s)	626, 1036
Csp6I	GTAC	3 cut(s)	374, 913, 1243
CspCI	CAANNNNNGTGG	2 cut(s)	915, 950
CviAII	CATG	6 cut(s)	90, 197, 359, 676, 1008, 1224
CviQI	GTAC	3 cut(s)	374, 913, 1243
DdeI	CTNAG	6 cut(s)	246, 745, 825, 858, 1239, 1378
DpnI	GATC	3 cut(s)	244, 1140, 1303
DpnII	GATC	3 cut(s)	242, 1138, 1301
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	114
Eco57I	CTGAAG	4 cut(s)	66, 891, 926, 1293
Eco91I	GGTNACC	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	633
EcoRV	GATATC	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	6 cut(s)	93, 200, 362, 679, 1011, 1227
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FaqI	GGGAC	2 cut(s)	966, 1268
FatI	CATG	6 cut(s)	89, 196, 358, 675, 1007, 1223
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	3 cut(s)	723, 1014, 1326
Fnu4HI	GCNGC	8 cut(s)	63, 105, 627, 793, 964, 1032, 1146, 1149
FokI	GGATG	2 cut(s)	301, 1251
Fsp4HI	GCNGC	8 cut(s)	63, 105, 627, 793, 964, 1032, 1146, 1149
FspBI	CTAG	3 cut(s)	240, 480, 1396
GlaI	GCGC	2 cut(s)	625, 1035
GluI	GCNGC	8 cut(s)	63, 105, 627, 793, 964, 1032, 1146, 1149
GsuI	CTGGAG	2 cut(s)	1155, 1371
HaeIII	GGCC	1 cut(s)	680
HapII	CCGG	2 cut(s)	15, 495
HhaI	GCGC	2 cut(s)	626, 1036
Hin1II	CATG	6 cut(s)	93, 200, 362, 679, 1011, 1227
Hin6I	GCGC	2 cut(s)	624, 1034
HinP1I	GCGC	2 cut(s)	624, 1034
HincII	GTYRAC	2 cut(s)	724, 1213
HindII	GTYRAC	2 cut(s)	724, 1213
HinfI	GANTC	6 cut(s)	126, 398, 501, 669, 1260, 1287
HpaII	CCGG	2 cut(s)	15, 495
HphI	GGTGA	3 cut(s)	22, 319, 1343
Hpy166II	GTNNAC	6 cut(s)	610, 724, 1015, 1069, 1213, 1327
Hpy188I	TCNGA	6 cut(s)	131, 247, 318, 538, 592, 1301
Hpy188III	TCNNGA	2 cut(s)	904, 1134
Hpy8I	GTNNAC	6 cut(s)	610, 724, 1015, 1069, 1213, 1327
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	2 cut(s)	41, 925
HpyCH4III	ACNGT	5 cut(s)	512, 523, 687, 1041, 1162
HpyCH4IV	ACGT	2 cut(s)	426, 1245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 623, 1388
HpyF3I	CTNAG	6 cut(s)	246, 745, 825, 858, 1239, 1378
HpySE526I	ACGT	2 cut(s)	426, 1245
Hsp92II	CATG	6 cut(s)	93, 200, 362, 679, 1011, 1227
HspAI	GCGC	2 cut(s)	624, 1034
Kzo9I	GATC	3 cut(s)	242, 1138, 1301
LguI	GCTCTTC	1 cut(s)	734
LmnI	GCTCC	1 cut(s)	923
Lsp1109I	GCAGC	6 cut(s)	91, 804, 950, 1043, 1135, 1157
LweI	GCATC	1 cut(s)	1084
MaeI	CTAG	3 cut(s)	240, 480, 1396
MaeII	ACGT	2 cut(s)	426, 1245
MaeIII	GTNAC	3 cut(s)	10, 85, 1349
MalI	GATC	3 cut(s)	244, 1140, 1303
MboI	GATC	3 cut(s)	242, 1138, 1301
MboII	GAAGA	7 cut(s)	339, 342, 376, 510, 748, 751, 975
MfeI	CAATTG	1 cut(s)	656
MflI	RGATCY	2 cut(s)	242, 1138
MhlI	GDGCHC	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	9 cut(s)	451, 633, 656, 811, 848, 978, 1084, 1100, 1368
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	2 cut(s)	763, 925
MnlI	CCTC	3 cut(s)	151, 205, 834
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	9 cut(s)	329, 582, 600, 689, 761, 1044, 1113, 1317, 1371
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	1 cut(s)	1148
MspI	CCGG	2 cut(s)	15, 495
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	656
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	3 cut(s)	62, 623, 1388
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	3 cut(s)	242, 1138, 1301
NlaIII	CATG	6 cut(s)	93, 200, 362, 679, 1011, 1227
NmuCI	GTSAC	3 cut(s)	10, 85, 1349
NspI	RCATGY	2 cut(s)	93, 1011
NspV	TTCGAA	2 cut(s)	637, 1166
PciI	ACATGT	1 cut(s)	89
PciSI	GCTCTTC	1 cut(s)	734
PfeI	GAWTC	5 cut(s)	126, 501, 669, 1260, 1287
PkrI	GCNGC	8 cut(s)	64, 106, 628, 794, 965, 1033, 1147, 1150
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
Ppu21I	YACGTR	1 cut(s)	1246
PscI	ACATGT	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	1371
PsiI	TTATAA	1 cut(s)	707
PspEI	GGTNACC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	1147
PstNI	CAGNNNCTG	1 cut(s)	1151
PsuI	RGATCY	2 cut(s)	242, 1138
PvuII	CAGCTG	1 cut(s)	1148
RsaI	GTAC	3 cut(s)	375, 914, 1244
RsaNI	GTAC	3 cut(s)	374, 913, 1243
RseI	CAYNNNNRTG	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	722
SapI	GCTCTTC	1 cut(s)	734
SaqAI	TTAA	9 cut(s)	329, 582, 600, 689, 761, 1044, 1113, 1317, 1371
SatI	GCNGC	8 cut(s)	63, 105, 627, 793, 964, 1032, 1146, 1149
Sau3AI	GATC	3 cut(s)	242, 1138, 1301
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	1084
SfcI	CTRYAG	2 cut(s)	1143, 1323
SfuI	TTCGAA	2 cut(s)	637, 1166
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	9 cut(s)	451, 633, 656, 811, 848, 978, 1084, 1100, 1368
SsiI	CCGC	5 cut(s)	56, 62, 65, 626, 1184
SspI	AATATT	1 cut(s)	890
SspMI	CTAG	3 cut(s)	240, 480, 1396
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	5 cut(s)	512, 523, 687, 1041, 1162
TaiI	ACGT	2 cut(s)	429, 1248
TaqI	TCGA	7 cut(s)	124, 471, 514, 525, 637, 723, 1166
TasI	AATT	9 cut(s)	451, 633, 656, 811, 848, 978, 1084, 1100, 1368
TatI	WGTACW	1 cut(s)	912
TauI	GCSGC	2 cut(s)	65, 629
TfiI	GAWTC	5 cut(s)	126, 501, 669, 1260, 1287
Tru1I	TTAA	9 cut(s)	329, 582, 600, 689, 761, 1044, 1113, 1317, 1371
Tru9I	TTAA	9 cut(s)	329, 582, 600, 689, 761, 1044, 1113, 1317, 1371
TscAI	CASTG	7 cut(s)	90, 102, 124, 178, 408, 862, 1297
TseFI	GTSAC	3 cut(s)	10, 85, 1349
TseI	GCWGC	6 cut(s)	104, 792, 963, 1031, 1145, 1148
Tsp45I	GTSAC	3 cut(s)	10, 85, 1349
TspDTI	ATGAA	6 cut(s)	203, 305, 347, 376, 1093, 1206
TspGWI	ACGGA	2 cut(s)	59, 1272
TspRI	CASTG	7 cut(s)	90, 102, 124, 178, 408, 862, 1297
VspI	ATTAAT	1 cut(s)	1371
XapI	RAATTY	3 cut(s)	633, 848, 1100
XceI	RCATGY	2 cut(s)	93, 1011
XmiI	GTMKAC	3 cut(s)	723, 1014, 1326
XspI	CTAG	3 cut(s)	240, 480, 1396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.