Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001889.1

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

72281 .. 74658

Gene Structure 2378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001889.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atggcttttcaggtgaaaccagtggctgcggtaattgctctatcttgggtcataaacatgcaacaacattcttcttgtattaatggagtgccaaaagtaccttgtttcttcatttttggagactcgctcggtgacaatggcaacaacaacttgcttgattctttggctaaagtcaactacacaccgtatggtatcgacttcgccggtggcgcaactggaagatttaccaacggtcgaaccaccattgatatattatctcaacttctgggttttgacaactacattccaccatttgtcttgcttaatagctctgacatactcaaaggactgaactatgcttctggtgcagcaggaattcgcgaagaaagtgggaggcaattgggtgcaagaatcagcatggacggacagttaaagaatcacgagattacaatctcccggatagctgacatacttggagagaagagggataaaaacaacgtaaacaggtccttacattcaggtgtaaaacagtggttggccaaaaaacacttgagcgagtgcttatattcagttggaatgggcagtaatgactacatcaacaattactttttgcctcagtactatgactccagtaaaaagtttaccactgagcagtatgctgaagctcttatcaaacaatattctgagcaaataaagaagttgtacaattatggagcaaggaaggtggttttggttggagtgggactaataggctgcaccccaactgcaatttctgcccacaaaaatgggtctgcatgtgtagacataatgaaccttgcagctcaacagtttaaccaaaggcttgtatcacttgtggatcagctcaacaaaaatttaacagatgccaaattcatctatattaacagctttgaactgggttctggaaatcctgcagctgctggattcaaggtttcgaacgttgggtgttgtgtgttaaatgaagttggccaatgtaaacttcaccaaattccatgcaagaataggaatgagtatgtgttttgggacggattccaccctacagaagccgcgaaccgaatcactgcaatcagatcatacactaatgctattaatcctgcagacacttatccaatggacatcagccaccttgctcagctaaaaattaatcatagattatctgcttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

387

Amino Acids

42.63

Weight (kDa)

8.81

Isoelectric Point (pI)

24.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	780
AccII	CGCG	2 cut(s)	360, 1046
AciI	CCGC	2 cut(s)	29, 1044
AclI	AACGTT	1 cut(s)	936
AclWI	GGATC	1 cut(s)	843
AcoI	YGGCCR	2 cut(s)	516, 964
AcsI	RAATTY	4 cut(s)	354, 850, 866, 984
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	3 cut(s)	99, 599, 683
AgsI	TTSAA	2 cut(s)	890, 925
AjuI	GAANNNNNNNTTGG	6 cut(s)	692, 724, 733, 765, 960, 992
AluBI	AGCT	8 cut(s)	309, 443, 644, 800, 841, 885, 914, 1132
AluI	AGCT	8 cut(s)	309, 443, 644, 800, 841, 885, 914, 1132
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	843
AlwNI	CAGNNNCTG	2 cut(s)	26, 917
AoxI	GGCC	2 cut(s)	516, 964
ApeKI	GCWGC	6 cut(s)	26, 347, 732, 797, 911, 914
ApoI	RAATTY	4 cut(s)	354, 850, 866, 984
AseI	ATTAAT	3 cut(s)	81, 1086, 1140
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	486
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	3 cut(s)	25, 143, 971
AsuII	TTCGAA	1 cut(s)	932
AvaII	GGWCC	1 cut(s)	486
BalI	TGGCCA	2 cut(s)	518, 966
BauI	CACGAG	1 cut(s)	419
BbvI	GCAGC	6 cut(s)	13, 359, 719, 809, 901, 923
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	3 cut(s)	909, 1035, 1092
BisI	GCNGC	7 cut(s)	27, 348, 733, 798, 912, 915, 1044
BlpI	GCTNAGC	1 cut(s)	1128
BlsI	GCNGC	7 cut(s)	28, 349, 734, 799, 913, 916, 1045
BmcAI	AGTACT	1 cut(s)	599
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	436
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	1 cut(s)	850
BmuI	ACTGGG	1 cut(s)	902
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	1 cut(s)	592
Bpu1102I	GCTNAGC	1 cut(s)	1128
Bpu14I	TTCGAA	1 cut(s)	932
BpuEI	CTTGAG	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	4 cut(s)	20, 220, 609, 897
Bse8I	GATNNNNATC	1 cut(s)	428
BseJI	GATNNNNATC	1 cut(s)	428
BseMII	CTCAG	4 cut(s)	608, 618, 654, 1142
BseNI	ACTGG	4 cut(s)	20, 220, 609, 897
BseXI	GCAGC	6 cut(s)	13, 359, 719, 809, 901, 923
BsgI	GTGCAG	2 cut(s)	366, 718
Bsh1236I	CGCG	2 cut(s)	360, 1046
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	518, 966
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	204, 436
BslFI	GGGAC	2 cut(s)	735, 1034
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	735, 1034
BsnI	GGCC	2 cut(s)	518, 966
Bsp119I	TTCGAA	1 cut(s)	932
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	835, 1067
Bsp1720I	GCTNAGC	1 cut(s)	1128
Bsp68I	TCGCGA	1 cut(s)	360
BspACI	CCGC	2 cut(s)	29, 1044
BspANI	GGCC	2 cut(s)	518, 966
BspCNI	CTCAG	4 cut(s)	607, 619, 655, 1141
BspFNI	CGCG	2 cut(s)	360, 1046
BspMAI	CTGCAG	2 cut(s)	913, 1096
BspPI	GGATC	1 cut(s)	843
BspT104I	TTCGAA	1 cut(s)	932
BsrFI	RCCGGY	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	4 cut(s)	20, 220, 609, 897
BssAI	RCCGGY	1 cut(s)	203
BssMI	GATC	2 cut(s)	835, 1067
BssSI	CACGAG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	419
Bst4CI	ACNGT	5 cut(s)	186, 233, 408, 510, 807
Bst6I	CTCTTC	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstAUI	TGTACA	1 cut(s)	681
BstBI	TTCGAA	1 cut(s)	932
BstDEI	CTNAG	4 cut(s)	594, 627, 663, 1128
BstFNI	CGCG	2 cut(s)	360, 1046
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	838, 1070
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	2 cut(s)	835, 1067
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 209, 344, 752
BstNSI	RCATGY	2 cut(s)	61, 777
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	3 cut(s)	909, 1035, 1092
BstUI	CGCG	2 cut(s)	360, 1046
BstV1I	GCAGC	6 cut(s)	13, 359, 719, 809, 901, 923
BstXI	CCANNNNNNTGG	1 cut(s)	764
BsuRI	GGCC	2 cut(s)	518, 966
BtsI	GCAGTG	1 cut(s)	1056
BtsIMutI	CAGTG	4 cut(s)	27, 515, 624, 1056
BtuMI	TCGCGA	1 cut(s)	360
CaiI	CAGNNNCTG	2 cut(s)	26, 917
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	486
Csp6I	GTAC	3 cut(s)	98, 598, 682
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	4 cut(s)	58, 397, 774, 990
CviQI	GTAC	3 cut(s)	98, 598, 682
DdeI	CTNAG	4 cut(s)	594, 627, 663, 1128
DpnI	GATC	2 cut(s)	837, 1069
DpnII	GATC	2 cut(s)	835, 1067
EaeI	YGGCCR	2 cut(s)	516, 964
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	486
EcoRI	GAATTC	1 cut(s)	354
FaeI	CATG	4 cut(s)	61, 400, 777, 993
FaqI	GGGAC	2 cut(s)	735, 1034
FatI	CATG	4 cut(s)	57, 396, 773, 989
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	7 cut(s)	27, 348, 733, 798, 912, 915, 1044
Fsp4HI	GCNGC	7 cut(s)	27, 348, 733, 798, 912, 915, 1044
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	7 cut(s)	27, 348, 733, 798, 912, 915, 1044
GsuI	CTGGAG	1 cut(s)	592
HaeIII	GGCC	2 cut(s)	518, 966
HapII	CCGG	2 cut(s)	204, 436
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	61, 400, 777, 993
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	8 cut(s)	122, 158, 390, 415, 605, 921, 1026, 1053
HpaII	CCGG	2 cut(s)	204, 436
HphI	GGTGA	3 cut(s)	25, 143, 971
Hpy166II	GTNNAC	5 cut(s)	175, 481, 621, 781, 974
Hpy188I	TCNGA	3 cut(s)	313, 664, 1067
Hpy188III	TCNNGA	3 cut(s)	359, 419, 900
Hpy8I	GTNNAC	5 cut(s)	175, 481, 621, 781, 974
HpyAV	CCTTC	1 cut(s)	694
HpyCH4III	ACNGT	5 cut(s)	186, 233, 408, 510, 807
HpyCH4IV	ACGT	2 cut(s)	477, 936
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 209, 344, 752
HpyF3I	CTNAG	4 cut(s)	594, 627, 663, 1128
HpySE526I	ACGT	2 cut(s)	477, 936
Hsp92II	CATG	4 cut(s)	61, 400, 777, 993
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	835, 1067
LmnI	GCTCC	1 cut(s)	692
Lsp1109I	GCAGC	6 cut(s)	13, 359, 719, 809, 901, 923
LweI	GCATC	1 cut(s)	850
MaeII	ACGT	2 cut(s)	477, 936
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	837, 1069
MboI	GATC	2 cut(s)	835, 1067
MboII	GAAGA	5 cut(s)	63, 100, 231, 374, 472
MfeI	CAATTG	1 cut(s)	377
MlsI	TGGCCA	2 cut(s)	518, 966
MluNI	TGGCCA	2 cut(s)	518, 966
MlyI	GAGTC	2 cut(s)	116, 599
MmeI	TCCRAC	2 cut(s)	532, 694
MnlI	CCTC	3 cut(s)	366, 456, 603
Mox20I	TGGCCA	2 cut(s)	518, 966
MscI	TGGCCA	2 cut(s)	518, 966
MseI	TTAA	9 cut(s)	81, 303, 410, 810, 854, 879, 953, 1086, 1140
MslI	CAYNNNNRTG	3 cut(s)	56, 498, 762
Msp20I	TGGCCA	2 cut(s)	518, 966
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	2 cut(s)	204, 436
MspR9I	CCNGG	1 cut(s)	436
MunI	CAATTG	1 cut(s)	377
MvnI	CGCG	2 cut(s)	360, 1046
MwoI	GCNNNNNNNGC	4 cut(s)	35, 209, 344, 752
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	2 cut(s)	835, 1067
NlaIII	CATG	4 cut(s)	61, 400, 777, 993
NmuCI	GTSAC	1 cut(s)	131
NruI	TCGCGA	1 cut(s)	360
NspI	RCATGY	2 cut(s)	61, 777
NspV	TTCGAA	1 cut(s)	932
PfeI	GAWTC	6 cut(s)	158, 390, 415, 921, 1026, 1053
PfoI	TCCNGGA	1 cut(s)	434
PkrI	GCNGC	7 cut(s)	28, 349, 734, 799, 913, 916, 1045
PleI	GAGTC	2 cut(s)	116, 599
PpsI	GAGTC	2 cut(s)	116, 599
PpuMI	RGGWCCY	1 cut(s)	486
PshBI	ATTAAT	3 cut(s)	81, 1086, 1140
Psp1406I	AACGTT	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	486
PspPPI	RGGWCCY	1 cut(s)	486
PstI	CTGCAG	2 cut(s)	913, 1096
PstNI	CAGNNNCTG	2 cut(s)	26, 917
PvuII	CAGCTG	1 cut(s)	914
RruI	TCGCGA	1 cut(s)	360
RsaI	GTAC	3 cut(s)	99, 599, 683
RsaNI	GTAC	3 cut(s)	98, 598, 682
RseI	CAYNNNNRTG	3 cut(s)	56, 498, 762
SaqAI	TTAA	9 cut(s)	81, 303, 410, 810, 854, 879, 953, 1086, 1140
SatI	GCNGC	7 cut(s)	27, 348, 733, 798, 912, 915, 1044
Sau3AI	GATC	2 cut(s)	835, 1067
Sau96I	GGNCC	1 cut(s)	486
ScaI	AGTACT	1 cut(s)	599
SchI	GAGTC	2 cut(s)	116, 599
ScrFI	CCNGG	1 cut(s)	436
SfaNI	GCATC	1 cut(s)	850
SfcI	CTRYAG	3 cut(s)	909, 1035, 1092
SfuI	TTCGAA	1 cut(s)	932
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	486
SmiMI	CAYNNNNRTG	3 cut(s)	56, 498, 762
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
SsiI	CCGC	2 cut(s)	29, 1044
SspI	AATATT	1 cut(s)	659
StyD4I	CCNGG	1 cut(s)	434
TaaI	ACNGT	5 cut(s)	186, 233, 408, 510, 807
TaiI	ACGT	2 cut(s)	480, 939
TaqI	TCGA	3 cut(s)	195, 235, 932
TatI	WGTACW	2 cut(s)	597, 681
TauI	GCSGC	1 cut(s)	1046
TfiI	GAWTC	6 cut(s)	158, 390, 415, 921, 1026, 1053
Tru1I	TTAA	9 cut(s)	81, 303, 410, 810, 854, 879, 953, 1086, 1140
Tru9I	TTAA	9 cut(s)	81, 303, 410, 810, 854, 879, 953, 1086, 1140
TscAI	CASTG	4 cut(s)	27, 515, 631, 1063
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	6 cut(s)	26, 347, 732, 797, 911, 914
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	4 cut(s)	100, 803, 859, 972
TspGWI	ACGGA	2 cut(s)	417, 1038
TspRI	CASTG	4 cut(s)	27, 515, 631, 1063
VpaK11BI	GGWCC	1 cut(s)	486
VspI	ATTAAT	3 cut(s)	81, 1086, 1140
XapI	RAATTY	4 cut(s)	354, 850, 866, 984
XceI	RCATGY	2 cut(s)	61, 777
XmiI	GTMKAC	1 cut(s)	780
ZrmI	AGTACT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.