Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001889.1

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

101179 .. 103669

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001889.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggcttttcaagtgaaaccattggcggtggtaattgctctatcttgggttttaagcatgcaacagcattcttcttctgttaatggaaagccacaagtaccttgtttcttcatttttggagactcgctggctgacagtggcaacaacaacttgcttgattctctggctaaagtcaactacacgccgtatggtatcgacttccctggtggcgcaaccggaagatttaccaacggtcgaaccaccatcgacgtactatctcaacttctgggttttgacaactacattccaccattttccttgcttaatagctctgacatactcaaaggactgaactatgcttctggtgcagcaggaattcgcaaagaaagcgggaggcaattgggtgcaagaatcagcatggacagacagttaaagaatcacaagattacaatctcccggattgctgacatacttggaaagaagagggctaaaagtccttacttaagcaagtacttgtacaagtccttacgttcaggtgtaaaaaagtggttggccaaaaaatacttaagcaagtgcttgtattcagttggaatgggcagtaatgactacatcaacaattacttcttgcctcagtaccatgacaccagtaaaaagtttaccactgagcaatatgctgaagcccttatcaaacaatattctcagcaaataaagaagttgcacaaatatggtgcaaggaaggtggttttggttggagtgggactgataggctgcaccccaactgcaatttctgctggcacaaatgggtctgcatgtgtagatataatgaaccttgcagctctacagtttaaccaaaggcttgtatcacttgtggatcagctcaacagcaatttgacaaatgcaatgttcatctatattaacagctttgaaatgggttctggagatccagcagctgctggattcaaggtttcgaacgttgggtgttgtgcggtaaatgaagttggtcaatgtaaatttgaccaaaatccatgcaagaataggagcgagtatgtgttttgggacggattccatcctacagaagccttgaaccaaatcaatgcaataagatcatacagtagtgctattaatcctgcagacacttatccaatggacatcagtcaccttgctaagctaaaatttaatcatagagtggctgcttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

392

Amino Acids

43.14

Weight (kDa)

9.46

Isoelectric Point (pI)

23.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	26, 369, 965
AclI	AACGTT	1 cut(s)	951
AclWI	GGATC	2 cut(s)	858, 914
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	3 cut(s)	354, 989, 1151
AcuI	CTGAAG	1 cut(s)	675
AfaI	GTAC	5 cut(s)	99, 252, 491, 497, 614
AflII	CTTAAG	2 cut(s)	481, 544
AgsI	TTSAA	4 cut(s)	11, 905, 940, 1063
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	4 cut(s)	707, 739, 748, 780
AluBI	AGCT	6 cut(s)	309, 815, 856, 900, 929, 1147
AluI	AGCT	6 cut(s)	309, 815, 856, 900, 929, 1147
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	858, 914
AlwNI	CAGNNNCTG	2 cut(s)	929, 932
AoxI	GGCC	1 cut(s)	531
ApeKI	GCWGC	6 cut(s)	347, 747, 812, 926, 929, 1169
ApoI	RAATTY	3 cut(s)	354, 989, 1151
AseI	ATTAAT	1 cut(s)	1101
AspLEI	GCGC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	1127
AsuII	TTCGAA	1 cut(s)	947
BalI	TGGCCA	1 cut(s)	533
BbvI	GCAGC	6 cut(s)	359, 734, 824, 916, 938, 1156
BccI	CCATC	2 cut(s)	251, 1053
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	3 cut(s)	818, 1050, 1107
BfrI	CTTAAG	2 cut(s)	481, 544
BisI	GCNGC	6 cut(s)	348, 748, 813, 927, 930, 1170
BlpI	GCTNAGC	1 cut(s)	1143
BlsI	GCNGC	6 cut(s)	349, 749, 814, 928, 931, 1171
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	204, 436
BmrFI	CCNGG	2 cut(s)	204, 436
BoxI	GACNNNNGTC	1 cut(s)	1131
BpmI	CTGGAG	1 cut(s)	936
Bpu1102I	GCTNAGC	1 cut(s)	1143
Bpu14I	TTCGAA	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	624
Bse3DI	GCAATG	1 cut(s)	885
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	1045
BseJI	GATNNNNATC	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	3 cut(s)	623, 633, 692
BseNI	ACTGG	1 cut(s)	624
BseXI	GCAGC	6 cut(s)	359, 734, 824, 916, 938, 1156
BsgI	GTGCAG	2 cut(s)	366, 733
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	533
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	216, 436
BslFI	GGGAC	2 cut(s)	750, 1049
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	750, 1049
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	533
Bsp119I	TTCGAA	1 cut(s)	947
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	850, 919, 1082
Bsp1720I	GCTNAGC	1 cut(s)	1143
BspACI	CCGC	3 cut(s)	26, 369, 965
BspANI	GGCC	1 cut(s)	533
BspCNI	CTCAG	3 cut(s)	622, 634, 691
BspMAI	CTGCAG	1 cut(s)	1111
BspPI	GGATC	2 cut(s)	858, 914
BspT104I	TTCGAA	1 cut(s)	947
BspTI	CTTAAG	2 cut(s)	481, 544
BsrDI	GCAATG	1 cut(s)	885
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	3 cut(s)	850, 919, 1082
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	5 cut(s)	137, 233, 408, 822, 1091
Bst6I	CTCTTC	1 cut(s)	455
BstAFI	CTTAAG	2 cut(s)	481, 544
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstAUI	TGTACA	1 cut(s)	495
BstBI	TTCGAA	1 cut(s)	947
BstC8I	GCNNGC	3 cut(s)	59, 129, 772
BstDEI	CTNAG	4 cut(s)	609, 642, 678, 1143
BstF5I	GGATG	1 cut(s)	1045
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	3 cut(s)	853, 922, 1085
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	850, 919, 1082
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 366, 767
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	2 cut(s)	61, 792
BstPAI	GACNNNNGTC	1 cut(s)	1131
BstSCI	CCNGG	2 cut(s)	202, 434
BstSFI	CTRYAG	3 cut(s)	818, 1050, 1107
BstV1I	GCAGC	6 cut(s)	359, 734, 824, 916, 938, 1156
BstX2I	RGATCY	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	919
BsuRI	GGCC	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	1045
BtsIMutI	CAGTG	2 cut(s)	142, 639
Cac8I	GCNNGC	3 cut(s)	59, 129, 772
CaiI	CAGNNNCTG	2 cut(s)	929, 932
CfoI	GCGC	1 cut(s)	212
Csp6I	GTAC	5 cut(s)	98, 251, 490, 496, 613
CspCI	CAANNNNNGTGG	2 cut(s)	699, 734
CviAII	CATG	5 cut(s)	58, 397, 617, 789, 1005
CviQI	GTAC	5 cut(s)	98, 251, 490, 496, 613
DdeI	CTNAG	4 cut(s)	609, 642, 678, 1143
DpnI	GATC	3 cut(s)	852, 921, 1084
DpnII	GATC	3 cut(s)	850, 919, 1082
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	675
EcoRI	GAATTC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	5 cut(s)	61, 400, 620, 792, 1008
FaqI	GGGAC	2 cut(s)	750, 1049
FatI	CATG	5 cut(s)	57, 396, 616, 788, 1004
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	6 cut(s)	348, 748, 813, 927, 930, 1170
FokI	GGATG	1 cut(s)	1032
Fsp4HI	GCNGC	6 cut(s)	348, 748, 813, 927, 930, 1170
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	6 cut(s)	348, 748, 813, 927, 930, 1170
GsuI	CTGGAG	1 cut(s)	936
HaeIII	GGCC	1 cut(s)	533
HapII	CCGG	2 cut(s)	216, 436
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	5 cut(s)	61, 400, 620, 792, 1008
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	6 cut(s)	122, 158, 390, 415, 936, 1041
HpaII	CCGG	2 cut(s)	216, 436
HphI	GGTGA	1 cut(s)	1127
Hpy166II	GTNNAC	2 cut(s)	175, 636
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	915
Hpy8I	GTNNAC	2 cut(s)	175, 636
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	709
HpyCH4III	ACNGT	5 cut(s)	137, 233, 408, 822, 1091
HpyCH4IV	ACGT	3 cut(s)	249, 508, 951
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 366, 767
HpyF3I	CTNAG	4 cut(s)	609, 642, 678, 1143
HpySE526I	ACGT	3 cut(s)	249, 508, 951
Hsp92II	CATG	5 cut(s)	61, 400, 620, 792, 1008
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	850, 919, 1082
LmnI	GCTCC	1 cut(s)	1017
Lsp1109I	GCAGC	6 cut(s)	359, 734, 824, 916, 938, 1156
MaeII	ACGT	3 cut(s)	249, 508, 951
MaeIII	GTNAC	1 cut(s)	1133
MalI	GATC	3 cut(s)	852, 921, 1084
MboI	GATC	3 cut(s)	850, 919, 1082
MboII	GAAGA	5 cut(s)	63, 66, 100, 231, 472
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	919
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	8 cut(s)	33, 354, 377, 595, 762, 865, 989, 1151
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	547, 709
MnlI	CCTC	3 cut(s)	366, 456, 618
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	929
MspCI	CTTAAG	2 cut(s)	481, 544
MspI	CCGG	2 cut(s)	216, 436
MspR9I	CCNGG	2 cut(s)	204, 436
MunI	CAATTG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	344, 366, 767
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	3 cut(s)	850, 919, 1082
NlaIII	CATG	5 cut(s)	61, 400, 620, 792, 1008
NmuCI	GTSAC	1 cut(s)	1133
NspI	RCATGY	2 cut(s)	61, 792
NspV	TTCGAA	1 cut(s)	947
PaeI	GCATGC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	5 cut(s)	158, 390, 415, 936, 1041
PfoI	TCCNGGA	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	349, 749, 814, 928, 931, 1171
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PshAI	GACNNNNGTC	1 cut(s)	1131
PshBI	ATTAAT	1 cut(s)	1101
Psp1406I	AACGTT	1 cut(s)	951
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	1111
PstNI	CAGNNNCTG	2 cut(s)	929, 932
PsuI	RGATCY	1 cut(s)	919
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	5 cut(s)	99, 252, 491, 497, 614
RsaNI	GTAC	5 cut(s)	98, 251, 490, 496, 613
RseI	CAYNNNNRTG	1 cut(s)	702
SatI	GCNGC	6 cut(s)	348, 748, 813, 927, 930, 1170
Sau3AI	GATC	3 cut(s)	850, 919, 1082
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	204, 436
SfcI	CTRYAG	3 cut(s)	818, 1050, 1107
SfuI	TTCGAA	1 cut(s)	947
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	481, 544
SmoI	CTYRAG	2 cut(s)	481, 544
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	8 cut(s)	33, 354, 377, 595, 762, 865, 989, 1151
SsiI	CCGC	3 cut(s)	26, 369, 965
SspI	AATATT	1 cut(s)	674
StyD4I	CCNGG	2 cut(s)	202, 434
TaaI	ACNGT	5 cut(s)	137, 233, 408, 822, 1091
TaiI	ACGT	3 cut(s)	252, 511, 954
TaqI	TCGA	4 cut(s)	195, 235, 246, 947
TasI	AATT	8 cut(s)	33, 354, 377, 595, 762, 865, 989, 1151
TatI	WGTACW	2 cut(s)	489, 495
TfiI	GAWTC	5 cut(s)	158, 390, 415, 936, 1041
TscAI	CASTG	2 cut(s)	142, 646
TseFI	GTSAC	1 cut(s)	1133
TseI	GCWGC	6 cut(s)	347, 747, 812, 926, 929, 1169
Tsp45I	GTSAC	1 cut(s)	1133
TspDTI	ATGAA	4 cut(s)	100, 818, 874, 987
TspGWI	ACGGA	1 cut(s)	1053
TspRI	CASTG	2 cut(s)	142, 646
Vha464I	CTTAAG	2 cut(s)	481, 544
VspI	ATTAAT	1 cut(s)	1101
XapI	RAATTY	3 cut(s)	354, 989, 1151
XceI	RCATGY	2 cut(s)	61, 792
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.