Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

8350240 .. 8362259

Gene Structure 12020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG091600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGTGGTCAGCGGCGATGGTGCATGGCAGAATGGTCGCGATGGGGGCGGCTACTTATTAGATGCGGCGGCGTGGATGGCTAAGGCGGTGAAACCAGTGGCTGCGGTAATTGCTCTATCTTGGGTCATAAACATGCAACAACATTCTTCTTGTATTAATGGAGTGCCAAAAGTACCTTGTTTCTTCATTTTTGGAGACTCGCTCGGTGACAATGGCAACAACAACTTGCTTGATTCTTTGGCTAAAGTCAACTACACACCGTATGGTATCGACTTCGCCGGTGGCGCAACTGGAAGATTTACCAACGGTCGAACCACCATTGATATATTATCTCAACTTCTGGGTTTTGACAACTACATTCCACCATTTGTCTTGCTTAATAGCTCTGACATACTCAAAGGACTGAACTATGCTTCTGGTGCAGCAGGAATTCGCGAAGAAAGTGGGAGGCAATTGGGTGCAAGAATCAGCATGGACGGACAGTTAAAGAATCACGAGATTACAATCTCCCGGATAGCTGACATACTTGGAGAGAAGAGGGATAAAAACAACGTAAACAGGTCCTTACATTCAGGTGTAAAACAGTGGTTGGCCAAAAAACACTTGAGCGAGTGCTTATATTCAGTTGGAATGGGCAGTAATGACTACATCAACAATTACTTTTTGCCTCAGTACTATGACTCCAGTAAAAAGTTTACCACTGAGCAGTATGCTGAAGCTCTTATCAAACAATATTCTGAGCAAATAAAGAAGTTGTACAATTATGGAGCAAGGAAGGTGGTTTTGGTTGGAGTGGGACTAATAGGCTGCACCCCAACTGCAATTTCTGCCCACAAAAATGGGTCTGCATGTGTAGACATAATGAACCTTGCAGCTCAACAGTTTAACCAAAGGCTTGTATCACTTGTGGATCAGCTCAACAAAAATTTAACAGATGCCAAATTCATCTATATTAACAGCTTTGAACTGGGTTCTGGAAATCCTGCAGCTGCTGGATTCAAGGTTTCGAACGTTGGGTGTTGTGTGTTAAATGAAGTTGGCCAATGTAAACTTCACCAAATTCCATGCAAGAATAGGAATGAGTATGTGTTTTGGGACGGATTCCACCCTACAGAAGCCGCGAACCGAATCACTGCAATCAGATCATACACTAATGCTATTAATCCTGCAGACACTTATCCAATGGACATCAGCCACCTTGCTCAGCTAAAAATTAATCATAGATTATCTGCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

412

Amino Acids

45.1

Weight (kDa)

8.7

Isoelectric Point (pI)

24.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	62 - 379	4.5e-34	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	855
AccII	CGCG	3 cut(s)	39, 435, 1121
AciI	CCGC	7 cut(s)	12, 48, 65, 68, 86, 104, 1119
AclI	AACGTT	1 cut(s)	1011
AclWI	GGATC	1 cut(s)	918
AcoI	YGGCCR	2 cut(s)	591, 1039
AcsI	RAATTY	4 cut(s)	429, 925, 941, 1059
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	3 cut(s)	174, 674, 758
AgsI	TTSAA	2 cut(s)	965, 1000
AjuI	GAANNNNNNNTTGG	6 cut(s)	767, 799, 808, 840, 1035, 1067
AluBI	AGCT	8 cut(s)	384, 518, 719, 875, 916, 960, 989, 1207
AluI	AGCT	8 cut(s)	384, 518, 719, 875, 916, 960, 989, 1207
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	918
AlwNI	CAGNNNCTG	2 cut(s)	101, 992
AoxI	GGCC	2 cut(s)	591, 1039
ApeKI	GCWGC	6 cut(s)	101, 422, 807, 872, 986, 989
ApoI	RAATTY	4 cut(s)	429, 925, 941, 1059
AseI	ATTAAT	3 cut(s)	156, 1161, 1215
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	561
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	3 cut(s)	100, 218, 1046
AsuII	TTCGAA	1 cut(s)	1007
AvaII	GGWCC	1 cut(s)	561
BalI	TGGCCA	2 cut(s)	593, 1041
BauI	CACGAG	1 cut(s)	494
BbvI	GCAGC	6 cut(s)	88, 434, 794, 884, 976, 998
BccI	CCATC	3 cut(s)	11, 35, 70
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	189
BfmI	CTRYAG	3 cut(s)	984, 1110, 1167
BlpI	GCTNAGC	1 cut(s)	1203
BmcAI	AGTACT	1 cut(s)	674
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	1 cut(s)	561
BmgT120I	GGNCC	1 cut(s)	561
BmrFI	CCNGG	1 cut(s)	511
BmrI	ACTGGG	1 cut(s)	977
BmsI	GCATC	2 cut(s)	52, 925
BmuI	ACTGGG	1 cut(s)	977
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
BpmI	CTGGAG	1 cut(s)	667
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	1203
Bpu14I	TTCGAA	1 cut(s)	1007
BpuEI	CTTGAG	1 cut(s)	625
BpuMI	CCSGG	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	503
BsaXI	ACNNNNNCTCC	2 cut(s)	665, 695
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	4 cut(s)	95, 295, 684, 972
Bse8I	GATNNNNATC	1 cut(s)	503
BseGI	GGATG	1 cut(s)	81
BseJI	GATNNNNATC	1 cut(s)	503
BseMII	CTCAG	4 cut(s)	683, 693, 729, 1217
BseNI	ACTGG	4 cut(s)	95, 295, 684, 972
BseXI	GCAGC	6 cut(s)	88, 434, 794, 884, 976, 998
BsgI	GTGCAG	2 cut(s)	441, 793
Bsh1236I	CGCG	3 cut(s)	39, 435, 1121
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	593, 1041
BsiEI	CGRYCG	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	279, 511
BslFI	GGGAC	2 cut(s)	810, 1109
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	2 cut(s)	810, 1109
BsnI	GGCC	2 cut(s)	593, 1041
Bsp119I	TTCGAA	1 cut(s)	1007
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	2 cut(s)	910, 1142
Bsp1720I	GCTNAGC	1 cut(s)	1203
Bsp68I	TCGCGA	2 cut(s)	39, 435
BspACI	CCGC	7 cut(s)	12, 48, 65, 68, 86, 104, 1119
BspANI	GGCC	2 cut(s)	593, 1041
BspCNI	CTCAG	4 cut(s)	682, 694, 730, 1216
BspFNI	CGCG	3 cut(s)	39, 435, 1121
BspMAI	CTGCAG	2 cut(s)	988, 1171
BspPI	GGATC	1 cut(s)	918
BspT104I	TTCGAA	1 cut(s)	1007
BsrFI	RCCGGY	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	4 cut(s)	95, 295, 684, 972
BssAI	RCCGGY	1 cut(s)	278
BssMI	GATC	2 cut(s)	910, 1142
BssSI	CACGAG	1 cut(s)	494
Bst2BI	CACGAG	1 cut(s)	494
Bst4CI	ACNGT	5 cut(s)	261, 308, 483, 585, 882
Bst6I	CTCTTC	1 cut(s)	530
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstAUI	TGTACA	1 cut(s)	756
BstBI	TTCGAA	1 cut(s)	1007
BstDEI	CTNAG	5 cut(s)	81, 669, 702, 738, 1203
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	3 cut(s)	39, 435, 1121
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	2 cut(s)	913, 1145
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	2 cut(s)	910, 1142
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 77, 110, 284, 419, 827
BstNSI	RCATGY	2 cut(s)	136, 852
BstSCI	CCNGG	1 cut(s)	509
BstSFI	CTRYAG	3 cut(s)	984, 1110, 1167
BstUI	CGCG	3 cut(s)	39, 435, 1121
BstV1I	GCAGC	6 cut(s)	88, 434, 794, 884, 976, 998
BstXI	CCANNNNNNTGG	1 cut(s)	839
BsuRI	GGCC	2 cut(s)	593, 1041
BtgZI	GCGATG	2 cut(s)	30, 54
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	1131
BtsIMutI	CAGTG	4 cut(s)	102, 590, 699, 1131
BtuMI	TCGCGA	2 cut(s)	39, 435
CaiI	CAGNNNCTG	2 cut(s)	101, 992
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	561
Csp6I	GTAC	3 cut(s)	173, 673, 757
CspCI	CAANNNNNGTGG	2 cut(s)	759, 794
CviAII	CATG	5 cut(s)	24, 133, 472, 849, 1065
CviQI	GTAC	3 cut(s)	173, 673, 757
DdeI	CTNAG	5 cut(s)	81, 669, 702, 738, 1203
DpnI	GATC	2 cut(s)	912, 1144
DpnII	GATC	2 cut(s)	910, 1142
EaeI	YGGCCR	2 cut(s)	591, 1039
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	561
Eco57I	CTGAAG	1 cut(s)	735
EcoO109I	RGGNCCY	1 cut(s)	561
EcoRI	GAATTC	1 cut(s)	429
FaeI	CATG	5 cut(s)	27, 136, 475, 852, 1068
FaqI	GGGAC	2 cut(s)	810, 1109
FatI	CATG	5 cut(s)	23, 132, 471, 848, 1064
FblI	GTMKAC	1 cut(s)	855
FokI	GGATG	1 cut(s)	88
GlaI	GCGC	1 cut(s)	286
GsuI	CTGGAG	1 cut(s)	667
HaeIII	GGCC	2 cut(s)	593, 1041
HapII	CCGG	2 cut(s)	279, 511
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	5 cut(s)	27, 136, 475, 852, 1068
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	8 cut(s)	197, 233, 465, 490, 680, 996, 1101, 1128
HpaII	CCGG	2 cut(s)	279, 511
HphI	GGTGA	3 cut(s)	100, 218, 1046
Hpy166II	GTNNAC	5 cut(s)	250, 556, 696, 856, 1049
Hpy188I	TCNGA	3 cut(s)	388, 739, 1142
Hpy188III	TCNNGA	4 cut(s)	38, 434, 494, 975
Hpy8I	GTNNAC	5 cut(s)	250, 556, 696, 856, 1049
HpyAV	CCTTC	1 cut(s)	769
HpyCH4III	ACNGT	5 cut(s)	261, 308, 483, 585, 882
HpyCH4IV	ACGT	2 cut(s)	552, 1011
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 77, 110, 284, 419, 827
HpyF3I	CTNAG	5 cut(s)	81, 669, 702, 738, 1203
HpySE526I	ACGT	2 cut(s)	552, 1011
Hsp92II	CATG	5 cut(s)	27, 136, 475, 852, 1068
HspAI	GCGC	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	910, 1142
LmnI	GCTCC	1 cut(s)	767
Lsp1109I	GCAGC	6 cut(s)	88, 434, 794, 884, 976, 998
LweI	GCATC	2 cut(s)	52, 925
MaeII	ACGT	2 cut(s)	552, 1011
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	2 cut(s)	912, 1144
MboI	GATC	2 cut(s)	910, 1142
MboII	GAAGA	5 cut(s)	138, 175, 306, 449, 547
MfeI	CAATTG	1 cut(s)	452
MlsI	TGGCCA	2 cut(s)	593, 1041
MluNI	TGGCCA	2 cut(s)	593, 1041
MlyI	GAGTC	2 cut(s)	191, 674
MmeI	TCCRAC	2 cut(s)	607, 769
MnlI	CCTC	3 cut(s)	441, 531, 678
Mox20I	TGGCCA	2 cut(s)	593, 1041
MscI	TGGCCA	2 cut(s)	593, 1041
MseI	TTAA	9 cut(s)	156, 378, 485, 885, 929, 954, 1028, 1161, 1215
MslI	CAYNNNNRTG	3 cut(s)	131, 573, 837
Msp20I	TGGCCA	2 cut(s)	593, 1041
MspA1I	CMGCKG	2 cut(s)	12, 989
MspI	CCGG	2 cut(s)	279, 511
MspR9I	CCNGG	1 cut(s)	511
MunI	CAATTG	1 cut(s)	452
MvnI	CGCG	3 cut(s)	39, 435, 1121
MwoI	GCNNNNNNNGC	6 cut(s)	45, 77, 110, 284, 419, 827
NciI	CCSGG	1 cut(s)	511
NdeII	GATC	2 cut(s)	910, 1142
NlaIII	CATG	5 cut(s)	27, 136, 475, 852, 1068
NmuCI	GTSAC	1 cut(s)	206
NruI	TCGCGA	2 cut(s)	39, 435
NspI	RCATGY	2 cut(s)	136, 852
NspV	TTCGAA	1 cut(s)	1007
PfeI	GAWTC	6 cut(s)	233, 465, 490, 996, 1101, 1128
PfoI	TCCNGGA	1 cut(s)	509
PleI	GAGTC	2 cut(s)	191, 674
PpsI	GAGTC	2 cut(s)	191, 674
PpuMI	RGGWCCY	1 cut(s)	561
PshBI	ATTAAT	3 cut(s)	156, 1161, 1215
Psp1406I	AACGTT	1 cut(s)	1011
Psp5II	RGGWCCY	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	561
PspPPI	RGGWCCY	1 cut(s)	561
PstI	CTGCAG	2 cut(s)	988, 1171
PstNI	CAGNNNCTG	2 cut(s)	101, 992
PvuII	CAGCTG	1 cut(s)	989
RruI	TCGCGA	2 cut(s)	39, 435
RsaI	GTAC	3 cut(s)	174, 674, 758
RsaNI	GTAC	3 cut(s)	173, 673, 757
RseI	CAYNNNNRTG	3 cut(s)	131, 573, 837
SaqAI	TTAA	9 cut(s)	156, 378, 485, 885, 929, 954, 1028, 1161, 1215
Sau3AI	GATC	2 cut(s)	910, 1142
Sau96I	GGNCC	1 cut(s)	561
ScaI	AGTACT	1 cut(s)	674
SchI	GAGTC	2 cut(s)	191, 674
ScrFI	CCNGG	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	52, 925
SfcI	CTRYAG	3 cut(s)	984, 1110, 1167
SfuI	TTCGAA	1 cut(s)	1007
SgrAI	CRCCGGYG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	561
SmiMI	CAYNNNNRTG	3 cut(s)	131, 573, 837
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
SsiI	CCGC	7 cut(s)	12, 48, 65, 68, 86, 104, 1119
SspI	AATATT	1 cut(s)	734
StyD4I	CCNGG	1 cut(s)	509
TaaI	ACNGT	5 cut(s)	261, 308, 483, 585, 882
TaiI	ACGT	2 cut(s)	555, 1014
TaqI	TCGA	3 cut(s)	270, 310, 1007
TatI	WGTACW	2 cut(s)	672, 756
TauI	GCSGC	5 cut(s)	15, 51, 68, 71, 1121
TfiI	GAWTC	6 cut(s)	233, 465, 490, 996, 1101, 1128
Tru1I	TTAA	9 cut(s)	156, 378, 485, 885, 929, 954, 1028, 1161, 1215
Tru9I	TTAA	9 cut(s)	156, 378, 485, 885, 929, 954, 1028, 1161, 1215
TscAI	CASTG	4 cut(s)	102, 590, 706, 1138
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	6 cut(s)	101, 422, 807, 872, 986, 989
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	4 cut(s)	175, 878, 934, 1047
TspGWI	ACGGA	2 cut(s)	492, 1113
TspRI	CASTG	4 cut(s)	102, 590, 706, 1138
VpaK11BI	GGWCC	1 cut(s)	561
VspI	ATTAAT	3 cut(s)	156, 1161, 1215
XapI	RAATTY	4 cut(s)	429, 925, 941, 1059
XceI	RCATGY	2 cut(s)	136, 852
XmiI	GTMKAC	1 cut(s)	855
ZrmI	AGTACT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.