Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

8601703 .. 8604563

Gene Structure 2861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG105200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTTTTCAAGTGAAACCATTGGCGGTGGTAATTGCTCTATCTTGGGTTTTAAGCATGCAACAGCATTCTTCTTCTGTTAATGGAAAGCCACAAGTACCTTGTTTCTTCATTTTTGGAGACTCGCTGGCTGACAGTGGCAACAACAACTTGCTTGATTCTCTGGCTAAAGTCAACTACACGCCGTATGGTATCGACTTCCCTGGTGGAGCAACCGGAAGATTTACCAACGGTCGAACCACCATCGACGTACTATCTCAACTTCTGGGTTTTGACAACTACATTCCACCATTTTCCTTGCTTAATAGCTCTGACATACTCAAAGGACTGAACTATGCTTCTGGTGCAGCAGGAATTCGCAAAGAAAGCGGGAGGCAATTGGGTGCAAGAATCAGCATGGACAGACAGTTAAAGAATCACAAGATTACAATCTCCCGGATTGCTGACATACTTGGAAAGAAGAGGGCTAAAAAGCACGTACACAAGTCCTTACATTCAGGTGTAAAAAAGTGGTTGGCCAAAAAATACTTAAGCAAGTGCTTATATTCAGTTGGAATGGGCAGTAATGACTACATCAACAATTACTTCTTGCCTCAGTACCATGACACCAGTAAAAAGTTTACCACTGAGCAATATGCTGAAGCCCTTATCAAACAATATTCTCAGCAAATAAAGAAGTTGCACAAATATGGTGCAAGGAAGGTGGTTTTGGTTGGAGTGGGACTGATAGGCTGCACCCCAACTGCAATTTCTGCTGGCACAAATGGGTCTGCATGTGTAGATAGAATGAACCTTGCAGCTCTACAGTTTAACCAAAGGCTTGTATCACTTGTGGATCAGCTCAACAGCAATTTGACAAATGCAATGTTCATCTATATTAACAGCTTTGAAATGGGTTCTGGAGATCCAGCAGCTGCTGGATTCAAGGTTTCGAACGTTGGGTGTTGTGAGGTAAATGAAGTTGGTCAATGTAAATTTGACCAAAATCCATGTAAGAATAGGAGTGAGTATGTGTTTTGGGACGGATTCCATCCTACAGAAGCCTTGAACCAAATCAATGCAATAAGATCATACAGTAGTGCTATTAATCCTGCAGACACTTATCCAATGGACATCAGTCACCTTGCTAAGCTAAAATTTAATCATAGAGTGGCTGCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

387

Amino Acids

42.61

Weight (kDa)

9.45

Isoelectric Point (pI)

21.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	37 - 352	1.9e-34	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	26, 369
AclI	AACGTT	1 cut(s)	936
AclWI	GGATC	2 cut(s)	843, 899
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	3 cut(s)	354, 974, 1136
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	4 cut(s)	99, 252, 480, 599
AflII	CTTAAG	1 cut(s)	529
AgsI	TTSAA	4 cut(s)	11, 890, 925, 1048
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	4 cut(s)	692, 724, 733, 765
AluBI	AGCT	6 cut(s)	309, 800, 841, 885, 914, 1132
AluI	AGCT	6 cut(s)	309, 800, 841, 885, 914, 1132
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	843, 899
AlwNI	CAGNNNCTG	2 cut(s)	914, 917
AoxI	GGCC	1 cut(s)	516
ApeKI	GCWGC	6 cut(s)	347, 732, 797, 911, 914, 1154
ApoI	RAATTY	3 cut(s)	354, 974, 1136
AseI	ATTAAT	1 cut(s)	1086
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	1112
AsuII	TTCGAA	1 cut(s)	932
BalI	TGGCCA	1 cut(s)	518
BbvI	GCAGC	6 cut(s)	359, 719, 809, 901, 923, 1141
BccI	CCATC	2 cut(s)	251, 1038
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	3 cut(s)	803, 1035, 1092
BfrI	CTTAAG	1 cut(s)	529
BisI	GCNGC	6 cut(s)	348, 733, 798, 912, 915, 1155
BlpI	GCTNAGC	1 cut(s)	1128
BlsI	GCNGC	6 cut(s)	349, 734, 799, 913, 916, 1156
Bme1390I	CCNGG	2 cut(s)	204, 436
BmrFI	CCNGG	2 cut(s)	204, 436
BoxI	GACNNNNGTC	1 cut(s)	1116
BpmI	CTGGAG	1 cut(s)	921
Bpu1102I	GCTNAGC	1 cut(s)	1128
Bpu14I	TTCGAA	1 cut(s)	932
BpuMI	CCSGG	1 cut(s)	436
BsaAI	YACGTR	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	870
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	1030
BseJI	GATNNNNATC	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	3 cut(s)	608, 618, 677
BseNI	ACTGG	1 cut(s)	609
BseXI	GCAGC	6 cut(s)	359, 719, 809, 901, 923, 1141
BsgI	GTGCAG	2 cut(s)	366, 718
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	518
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	216, 436
BslFI	GGGAC	2 cut(s)	735, 1034
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	735, 1034
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	518
Bsp119I	TTCGAA	1 cut(s)	932
Bsp143I	GATC	3 cut(s)	835, 904, 1067
Bsp1720I	GCTNAGC	1 cut(s)	1128
BspACI	CCGC	2 cut(s)	26, 369
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	3 cut(s)	607, 619, 676
BspMAI	CTGCAG	1 cut(s)	1096
BspPI	GGATC	2 cut(s)	843, 899
BspT104I	TTCGAA	1 cut(s)	932
BspTI	CTTAAG	1 cut(s)	529
BsrDI	GCAATG	1 cut(s)	870
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	3 cut(s)	835, 904, 1067
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	5 cut(s)	137, 233, 408, 807, 1076
Bst6I	CTCTTC	1 cut(s)	455
BstAFI	CTTAAG	1 cut(s)	529
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstBAI	YACGTR	1 cut(s)	478
BstBI	TTCGAA	1 cut(s)	932
BstC8I	GCNNGC	3 cut(s)	59, 129, 757
BstDEI	CTNAG	4 cut(s)	594, 627, 663, 1128
BstF5I	GGATG	1 cut(s)	1030
BstKTI	GATC	3 cut(s)	838, 907, 1070
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	835, 904, 1067
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 366, 752
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	2 cut(s)	61, 777
BstPAI	GACNNNNGTC	1 cut(s)	1116
BstSCI	CCNGG	2 cut(s)	202, 434
BstSFI	CTRYAG	3 cut(s)	803, 1035, 1092
BstV1I	GCAGC	6 cut(s)	359, 719, 809, 901, 923, 1141
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
BsuRI	GGCC	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	1030
BtsIMutI	CAGTG	2 cut(s)	142, 624
Cac8I	GCNNGC	3 cut(s)	59, 129, 757
CaiI	CAGNNNCTG	2 cut(s)	914, 917
Csp6I	GTAC	4 cut(s)	98, 251, 479, 598
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	5 cut(s)	58, 397, 602, 774, 990
CviQI	GTAC	4 cut(s)	98, 251, 479, 598
DdeI	CTNAG	4 cut(s)	594, 627, 663, 1128
DpnI	GATC	3 cut(s)	837, 906, 1069
DpnII	GATC	3 cut(s)	835, 904, 1067
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	5 cut(s)	61, 400, 605, 777, 993
FaqI	GGGAC	2 cut(s)	735, 1034
FatI	CATG	5 cut(s)	57, 396, 601, 773, 989
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	6 cut(s)	348, 733, 798, 912, 915, 1155
FokI	GGATG	1 cut(s)	1017
Fsp4HI	GCNGC	6 cut(s)	348, 733, 798, 912, 915, 1155
GluI	GCNGC	6 cut(s)	348, 733, 798, 912, 915, 1155
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	2 cut(s)	216, 436
Hin1II	CATG	5 cut(s)	61, 400, 605, 777, 993
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	6 cut(s)	122, 158, 390, 415, 921, 1026
HpaII	CCGG	2 cut(s)	216, 436
HphI	GGTGA	1 cut(s)	1112
Hpy166II	GTNNAC	3 cut(s)	175, 481, 621
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	900
Hpy8I	GTNNAC	3 cut(s)	175, 481, 621
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	694
HpyCH4III	ACNGT	5 cut(s)	137, 233, 408, 807, 1076
HpyCH4IV	ACGT	3 cut(s)	249, 477, 936
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 366, 752
HpyF3I	CTNAG	4 cut(s)	594, 627, 663, 1128
HpySE526I	ACGT	3 cut(s)	249, 477, 936
Hsp92II	CATG	5 cut(s)	61, 400, 605, 777, 993
Kzo9I	GATC	3 cut(s)	835, 904, 1067
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	6 cut(s)	359, 719, 809, 901, 923, 1141
MaeII	ACGT	3 cut(s)	249, 477, 936
MaeIII	GTNAC	1 cut(s)	1118
MalI	GATC	3 cut(s)	837, 906, 1069
MboI	GATC	3 cut(s)	835, 904, 1067
MboII	GAAGA	5 cut(s)	63, 66, 100, 231, 472
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	904
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	8 cut(s)	33, 354, 377, 580, 747, 850, 974, 1136
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	532, 694
MnlI	CCTC	4 cut(s)	366, 456, 603, 943
Mox20I	TGGCCA	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	9 cut(s)	53, 81, 303, 410, 530, 810, 879, 1086, 1140
MslI	CAYNNNNRTG	2 cut(s)	498, 687
Msp20I	TGGCCA	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	914
MspCI	CTTAAG	1 cut(s)	529
MspI	CCGG	2 cut(s)	216, 436
MspR9I	CCNGG	2 cut(s)	204, 436
MunI	CAATTG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	344, 366, 752
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	3 cut(s)	835, 904, 1067
NlaIII	CATG	5 cut(s)	61, 400, 605, 777, 993
NmuCI	GTSAC	1 cut(s)	1118
NspI	RCATGY	2 cut(s)	61, 777
NspV	TTCGAA	1 cut(s)	932
PaeI	GCATGC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	5 cut(s)	158, 390, 415, 921, 1026
PfoI	TCCNGGA	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	349, 734, 799, 913, 916, 1156
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	478
PshAI	GACNNNNGTC	1 cut(s)	1116
PshBI	ATTAAT	1 cut(s)	1086
Psp1406I	AACGTT	1 cut(s)	936
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	1096
PstNI	CAGNNNCTG	2 cut(s)	914, 917
PsuI	RGATCY	1 cut(s)	904
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	4 cut(s)	99, 252, 480, 599
RsaNI	GTAC	4 cut(s)	98, 251, 479, 598
RseI	CAYNNNNRTG	2 cut(s)	498, 687
SaqAI	TTAA	9 cut(s)	53, 81, 303, 410, 530, 810, 879, 1086, 1140
SatI	GCNGC	6 cut(s)	348, 733, 798, 912, 915, 1155
Sau3AI	GATC	3 cut(s)	835, 904, 1067
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	204, 436
SfcI	CTRYAG	3 cut(s)	803, 1035, 1092
SfuI	TTCGAA	1 cut(s)	932
SmiMI	CAYNNNNRTG	2 cut(s)	498, 687
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	8 cut(s)	33, 354, 377, 580, 747, 850, 974, 1136
SsiI	CCGC	2 cut(s)	26, 369
SspI	AATATT	1 cut(s)	659
StyD4I	CCNGG	2 cut(s)	202, 434
TaaI	ACNGT	5 cut(s)	137, 233, 408, 807, 1076
TaiI	ACGT	3 cut(s)	252, 480, 939
TaqI	TCGA	4 cut(s)	195, 235, 246, 932
TasI	AATT	8 cut(s)	33, 354, 377, 580, 747, 850, 974, 1136
TfiI	GAWTC	5 cut(s)	158, 390, 415, 921, 1026
Tru1I	TTAA	9 cut(s)	53, 81, 303, 410, 530, 810, 879, 1086, 1140
Tru9I	TTAA	9 cut(s)	53, 81, 303, 410, 530, 810, 879, 1086, 1140
TscAI	CASTG	2 cut(s)	142, 631
TseFI	GTSAC	1 cut(s)	1118
TseI	GCWGC	6 cut(s)	347, 732, 797, 911, 914, 1154
Tsp45I	GTSAC	1 cut(s)	1118
TspDTI	ATGAA	4 cut(s)	100, 803, 859, 972
TspGWI	ACGGA	1 cut(s)	1038
TspRI	CASTG	2 cut(s)	142, 631
Vha464I	CTTAAG	1 cut(s)	529
VspI	ATTAAT	1 cut(s)	1086
XapI	RAATTY	3 cut(s)	354, 974, 1136
XceI	RCATGY	2 cut(s)	61, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.