Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Forward (+)

3812004 .. 3815130

Gene Structure 3127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTTGTGCCATGAAGCTTTTGGTGGTGGTGATCTCTCTTTCTTGGGTACTAAGTATGCAACATTCCTGCTTTGTTCTTGGCAAGCCAGCAGTCCCTTGTTTCTTCATTTTTGGCGACTCTCTGTCTGATTGTGGCAACAACAACGTGCTTAATACTACTGCTAAGGTTAACTACGAGCCGTATGGCGTCGACTTTCCTTATGGACCAACCGGAAGGTTTTGCAACGGTCGCACCACCGTTGATATACTCACTGAACTTCTGGGATTTGAAAACTACATTCCACCATTTGATTATGCGAATGGCTCCGCCATACTCAGCGGTGTAAACTACGCATCCGGTGCATCAGGAATTCGAAGAGAATCCGGGATGACATCGGGCACAGTGCTCAGCATGGGTAAACAGTTAAAGAACCACAGGAAAACTATCTCGCGCATCATCGGCATGCTTGGAAAGAAAAGCTTGGCCAGAAACTACTTGAACAAGTGCTTATATTCAGTCGCAACAGGCAGCAATGACTACATTAACAATTACTTTTTACCTCAATACTATAATACTAGTCAAGAATATACACTTGAGGAATATGCCGTAGTTCTTGTCGAACAATATTCTCGGCAAATACTGAGATTGTATGAGTATGGAGCAAAGAAGGTTGTTTTGGGTGGACTGGGACTAATAGGCTGCACTCCTGCTGCAATTGCTAGCTATGGCACCAACGGATCATGTTCTGAAGAACTCAACTATGCAGCCCAACTTTTCAACCAACAGCTTGTATCTCTTGTTGATCAGCTCAACAGCAATTTGACTGATGCAAAGTTCATCTACATTAACAACTACGGAATCGGTTCGGTCAATACTACAAGTCTTGGATTCACGGTGTCGGATGCTGGGTGCTGTACACTTAACAGCGGTGGCCTGTGTGTGGAAGATTCAACTCCATGCGAGGATAGGAGTGAGTATGTGTTTTGGGACGGGTTCCATCCTACTGAGGCTTTTAATCGGATCAGTGCTAACAAAAGCTACAGTTCGTATGAGTCTGCCGACACTTATCCAATGGATGTTAGTCAACTAGTTGAGCTAGAGTTCAATCCTCTGGTGGCAGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

370

Amino Acids

40.45

Weight (kDa)

4.94

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	36 - 338	6.2e-32	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	433
AciI	CCGC	3 cut(s)	309, 321, 909
AclWI	GGATC	2 cut(s)	727, 1010
AcoI	YGGCCR	1 cut(s)	465
AcsI	RAATTY	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	750
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	2 cut(s)	51, 898
AfiI	CCNNNNNNNGG	1 cut(s)	922
AgsI	TTSAA	5 cut(s)	272, 481, 760, 933, 1087
AhdI	GACNNNNNGTC	1 cut(s)	124
AhlI	ACTAGT	2 cut(s)	557, 1069
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AluBI	AGCT	7 cut(s)	19, 462, 705, 769, 790, 1020, 1078
AluI	AGCT	7 cut(s)	19, 462, 705, 769, 790, 1020, 1078
Alw21I	GWGCWC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	727, 1010
AoxI	GGCC	2 cut(s)	465, 913
ApeKI	GCWGC	4 cut(s)	510, 681, 692, 746
ApoI	RAATTY	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	844
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	355
AsuNHI	GCTAGC	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	383
BalI	TGGCCA	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	710
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	4 cut(s)	522, 668, 679, 758
BccI	CCATC	1 cut(s)	987
BceAI	ACGGC	2 cut(s)	166, 572
BclI	TGATCA	1 cut(s)	784
BcnI	CCSGG	1 cut(s)	367
BcuI	ACTAGT	2 cut(s)	557, 1069
BfaI	CTAG	4 cut(s)	558, 702, 1070, 1079
BfmI	CTRYAG	1 cut(s)	1021
BisI	GCNGC	4 cut(s)	511, 682, 693, 747
BlpI	GCTNAGC	1 cut(s)	389
BlsI	GCNGC	4 cut(s)	512, 683, 694, 748
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	206
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	3 cut(s)	307, 712, 977
BmrFI	CCNGG	1 cut(s)	367
BmrI	ACTGGG	1 cut(s)	677
BmsI	GCATC	5 cut(s)	344, 353, 444, 799, 874
BmtI	GCTAGC	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	677
Bpu10I	CCTNAGC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	367
BsaHI	GRCGYC	1 cut(s)	189
BsaWI	WCCGGW	2 cut(s)	212, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	922
Bse1I	ACTGG	1 cut(s)	672
Bse3DI	GCAATG	1 cut(s)	520
BseGI	GGATG	5 cut(s)	335, 375, 889, 979, 1063
BseLI	CCNNNNNNNGG	1 cut(s)	922
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	4 cut(s)	331, 403, 614, 978
BseNI	ACTGG	1 cut(s)	672
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	4 cut(s)	522, 668, 679, 758
BseYI	CCCAGC	1 cut(s)	887
BsgI	GTGCAG	1 cut(s)	667
Bsh1236I	CGCG	1 cut(s)	433
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	467, 915
BshNI	GGYRCC	1 cut(s)	710
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	3 cut(s)	213, 339, 366
BslFI	GGGAC	3 cut(s)	80, 684, 983
BslI	CCNNNNNNNGG	1 cut(s)	922
BsmFI	GGGAC	3 cut(s)	80, 684, 983
BsnI	GGCC	2 cut(s)	467, 915
Bsp119I	TTCGAA	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	383, 390
Bsp1407I	TGTACA	1 cut(s)	896
Bsp143I	GATC	4 cut(s)	33, 719, 784, 1002
Bsp1720I	GCTNAGC	1 cut(s)	389
BspACI	CCGC	3 cut(s)	309, 321, 909
BspANI	GGCC	2 cut(s)	467, 915
BspCNI	CTCAG	4 cut(s)	330, 402, 615, 979
BspFNI	CGCG	1 cut(s)	433
BspLI	GGNNCC	3 cut(s)	307, 712, 977
BspOI	GCTAGC	1 cut(s)	705
BspPI	GGATC	2 cut(s)	727, 1010
BspT104I	TTCGAA	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	520
BsrGI	TGTACA	1 cut(s)	896
BsrI	ACTGG	1 cut(s)	672
BssMI	GATC	4 cut(s)	33, 719, 784, 1002
BssNI	GRCGYC	1 cut(s)	189
Bst4CI	ACNGT	6 cut(s)	230, 241, 385, 405, 877, 1025
Bst6I	CTCTTC	1 cut(s)	352
BstACI	GRCGYC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	896
BstBI	TTCGAA	1 cut(s)	355
BstC8I	GCNNGC	4 cut(s)	86, 90, 446, 703
BstDEI	CTNAG	6 cut(s)	53, 165, 317, 389, 623, 987
BstF5I	GGATG	5 cut(s)	335, 375, 889, 979, 1063
BstFNI	CGCG	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	4 cut(s)	36, 722, 787, 1005
BstMBI	GATC	4 cut(s)	33, 719, 784, 1002
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	231, 341, 441, 698
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	1021
BstSLI	GKGCMC	1 cut(s)	383
BstUI	CGCG	1 cut(s)	433
BstV1I	GCAGC	4 cut(s)	522, 668, 679, 758
BsuRI	GGCC	2 cut(s)	467, 915
BtsCI	GGATG	5 cut(s)	335, 375, 889, 979, 1063
BtsIMutI	CAGTG	3 cut(s)	252, 390, 1012
Cac8I	GCNNGC	4 cut(s)	86, 90, 446, 703
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	50, 897
CviAII	CATG	5 cut(s)	13, 394, 445, 723, 939
CviQI	GTAC	2 cut(s)	50, 897
DdeI	CTNAG	6 cut(s)	53, 165, 317, 389, 623, 987
DpnI	GATC	4 cut(s)	35, 721, 786, 1004
DpnII	GATC	4 cut(s)	33, 719, 784, 1002
DriI	GACNNNNNGTC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	352
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	351
FaeI	CATG	5 cut(s)	16, 397, 448, 726, 942
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	3 cut(s)	80, 684, 983
FatI	CATG	5 cut(s)	12, 393, 444, 722, 938
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	4 cut(s)	511, 682, 693, 747
FokI	GGATG	5 cut(s)	322, 382, 896, 966, 1070
Fsp4HI	GCNGC	4 cut(s)	511, 682, 693, 747
FspBI	CTAG	4 cut(s)	558, 702, 1070, 1079
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	4 cut(s)	511, 682, 693, 747
GsaI	CCCAGC	1 cut(s)	891
HaeIII	GGCC	2 cut(s)	467, 915
HapII	CCGG	3 cut(s)	213, 339, 366
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	435
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	5 cut(s)	16, 397, 448, 726, 942
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	3 cut(s)	172, 193, 1067
HindII	GTYRAC	3 cut(s)	172, 193, 1067
HindIII	AAGCTT	2 cut(s)	17, 460
HinfI	GANTC	6 cut(s)	119, 362, 840, 870, 929, 1034
HpaI	GTTAAC	1 cut(s)	172
HpaII	CCGG	3 cut(s)	213, 339, 366
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	7 cut(s)	172, 193, 328, 401, 665, 899, 1067
Hpy188I	TCNGA	4 cut(s)	130, 730, 883, 1002
Hpy188III	TCNNGA	2 cut(s)	348, 563
Hpy8I	GTNNAC	7 cut(s)	172, 193, 328, 401, 665, 899, 1067
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	210, 643
HpyCH4III	ACNGT	6 cut(s)	230, 241, 385, 405, 877, 1025
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	7 cut(s)	61, 225, 344, 684, 695, 746, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	231, 341, 441, 698
HpyF3I	CTNAG	6 cut(s)	53, 165, 317, 389, 623, 987
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	5 cut(s)	16, 397, 448, 726, 942
HspAI	GCGC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	784
KspAI	GTTAAC	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	33, 719, 784, 1002
LmnI	GCTCC	2 cut(s)	311, 641
Lsp1109I	GCAGC	4 cut(s)	522, 668, 679, 758
LweI	GCATC	5 cut(s)	344, 353, 444, 799, 874
MaeI	CTAG	4 cut(s)	558, 702, 1070, 1079
MaeII	ACGT	1 cut(s)	147
MalI	GATC	4 cut(s)	35, 721, 786, 1004
MboI	GATC	4 cut(s)	33, 719, 784, 1002
MboII	GAAGA	4 cut(s)	97, 369, 743, 938
MfeI	CAATTG	1 cut(s)	696
MhlI	GDGCHC	2 cut(s)	383, 390
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	4 cut(s)	351, 529, 696, 799
MluNI	TGGCCA	1 cut(s)	467
MlyI	GAGTC	2 cut(s)	113, 1043
MmeI	TCCRAC	1 cut(s)	861
MnlI	CCTC	5 cut(s)	552, 571, 937, 982, 1101
Mox20I	TGGCCA	1 cut(s)	467
MroXI	GAANNNNTTC	1 cut(s)	844
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	7 cut(s)	153, 171, 407, 525, 828, 903, 996
MslI	CAYNNNNRTG	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	467
MspA1I	CMGCKG	2 cut(s)	321, 909
MspI	CCGG	3 cut(s)	213, 339, 366
MspR9I	CCNGG	1 cut(s)	367
MunI	CAATTG	1 cut(s)	696
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	4 cut(s)	231, 341, 441, 698
NciI	CCSGG	1 cut(s)	367
NdeII	GATC	4 cut(s)	33, 719, 784, 1002
NheI	GCTAGC	1 cut(s)	701
NlaIII	CATG	5 cut(s)	16, 397, 448, 726, 942
NlaIV	GGNNCC	3 cut(s)	307, 712, 977
NmeAIII	GCCGAG	1 cut(s)	592
NspI	RCATGY	1 cut(s)	448
NspV	TTCGAA	1 cut(s)	355
PaeI	GCATGC	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	844
PfeI	GAWTC	4 cut(s)	362, 840, 870, 929
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	512, 683, 694, 748
PleI	GAGTC	2 cut(s)	113, 1042
PpsI	GAGTC	2 cut(s)	113, 1042
PspFI	CCCAGC	1 cut(s)	887
PspN4I	GGNNCC	3 cut(s)	307, 712, 977
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	2 cut(s)	51, 898
RsaNI	GTAC	2 cut(s)	50, 897
RseI	CAYNNNNRTG	1 cut(s)	443
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	7 cut(s)	153, 171, 407, 525, 828, 903, 996
SatI	GCNGC	4 cut(s)	511, 682, 693, 747
Sau3AI	GATC	4 cut(s)	33, 719, 784, 1002
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	2 cut(s)	113, 1043
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	2 cut(s)	383, 390
SfaNI	GCATC	5 cut(s)	344, 353, 444, 799, 874
SfcI	CTRYAG	1 cut(s)	1021
SfuI	TTCGAA	1 cut(s)	355
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SpeI	ACTAGT	2 cut(s)	557, 1069
SphI	GCATGC	1 cut(s)	448
Sse9I	AATT	4 cut(s)	351, 529, 696, 799
SsiI	CCGC	3 cut(s)	309, 321, 909
SspI	AATATT	1 cut(s)	608
SspMI	CTAG	4 cut(s)	558, 702, 1070, 1079
StyD4I	CCNGG	1 cut(s)	365
TaaI	ACNGT	6 cut(s)	230, 241, 385, 405, 877, 1025
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	192, 355, 600
TaqII	GACCGA	1 cut(s)	838
TasI	AATT	4 cut(s)	351, 529, 696, 799
TatI	WGTACW	1 cut(s)	896
TfiI	GAWTC	4 cut(s)	362, 840, 870, 929
Tru1I	TTAA	7 cut(s)	153, 171, 407, 525, 828, 903, 996
Tru9I	TTAA	7 cut(s)	153, 171, 407, 525, 828, 903, 996
TscAI	CASTG	3 cut(s)	259, 390, 1012
TseI	GCWGC	4 cut(s)	510, 681, 692, 746
TspDTI	ATGAA	3 cut(s)	29, 97, 808
TspGWI	ACGGA	2 cut(s)	732, 852
TspRI	CASTG	3 cut(s)	259, 390, 1012
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	351
XceI	RCATGY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	844
XspI	CTAG	4 cut(s)	558, 702, 1070, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.