Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

8241470 .. 8244585

Gene Structure 3116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG092300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTTTTCAGGTGAAACCAGTGGCTGCGGTAATTGCTCTATCTTGGGTCATAAACATGCAACAACATTCTTCTTGTGTTAATGGAGAGCCAAAAGTACCTTGTTTCTTCATTTTTGGAGACTCGCTGGCTGACAATGGCAACAACAACTTGCTTGATTCTTTGGCTAAAGTCAACTACACGCCGTATGGTATCGACTTCGCCGGTGGCGCAACTGGAAGATTTACCAACGGTCGAACCACCATCGATATATTATCTCAACTTCTGGGTTTTGACAACTACATTCCACCATTTGTCTTGCTTAATAGCTCTGACATACTCAAAGGACTGAACTATGCTTCTGGTGCAGCAGGAATTCGCGAAGAAAGTGGGAGGCAATTGGGTGCAAGAATCAGCATGGACGGACAGTTAAAGAATCACGAGATTACAATCTCCCGGATAGCTGACATACTTGGAGAGAAGAGGGCTAAAAACAACGTAAACAGGTCCTTACATTCAGGTGTAAAACAGTGGTTGGCCAAAAAACACTTGAGCGAGTGCTTATATTCAGTTGGAATGGGCAGTAATGACTACATCAACAATTACTTTTTGCCTCAGTACTATGACTCCAGTAAAAAGTTTACCACTGAGCAGTATGCTGAAGCTCTTATCAAACAATATTCTGAGCAAATAAAGAAGTTGTACAATTATGGAGCAAGGAAGGTGGTTTTGGTTGGAGTGGGACTAATAGGCTGCACCCCAACTGCAATTTCTGCCCGCAAAAATGGGTCTGCATGTGTAGACATAATGAACCTTGCAGCTCAACAGTTTAACCAAAGGCTTGTATCACTTGTGGATCAGCTCAACCTAAATTTAACAGATGCCAAATTCATCTATATTAACAGCTTTGAACTGGGTTCTGGAAATCCTGCAGCTGCTGGATTCAAGGTTTCGAACGTTGGGTGTTGTGCGTTAAATGAAGTTGGCCAATGTAAACTTCACCAAATTCCATGCAAGAATAGGAATGAGTATGTGTTTTGGGACGGATTCCACCCTACAGAAGCCGCGAACCGAATCACTGCAATCAGATCATACACTAATGCTATTAATCCTGCAGACACTTATCCAATGGACATCAGCCACCTTGCTCAGCTAAAAATTAATCATAGATTATCTACTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

387

Amino Acids

42.62

Weight (kDa)

8.82

Isoelectric Point (pI)

23.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	37 - 354	2.6e-34	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	780
AccII	CGCG	2 cut(s)	360, 1046
AciI	CCGC	3 cut(s)	29, 757, 1044
AclI	AACGTT	1 cut(s)	936
AclWI	GGATC	1 cut(s)	843
AcoI	YGGCCR	2 cut(s)	516, 964
AcsI	RAATTY	4 cut(s)	354, 850, 866, 984
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	3 cut(s)	99, 599, 683
AgsI	TTSAA	2 cut(s)	890, 925
AjuI	GAANNNNNNNTTGG	6 cut(s)	692, 724, 733, 765, 960, 992
AluBI	AGCT	8 cut(s)	309, 443, 644, 800, 841, 885, 914, 1132
AluI	AGCT	8 cut(s)	309, 443, 644, 800, 841, 885, 914, 1132
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	843
AlwNI	CAGNNNCTG	2 cut(s)	26, 917
AoxI	GGCC	2 cut(s)	516, 964
ApeKI	GCWGC	6 cut(s)	26, 347, 732, 797, 911, 914
ApoI	RAATTY	4 cut(s)	354, 850, 866, 984
AseI	ATTAAT	2 cut(s)	1086, 1140
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	486
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	2 cut(s)	25, 971
AsuII	TTCGAA	1 cut(s)	932
AvaII	GGWCC	1 cut(s)	486
BalI	TGGCCA	2 cut(s)	518, 966
BauI	CACGAG	1 cut(s)	419
BbvI	GCAGC	6 cut(s)	13, 359, 719, 809, 901, 923
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	3 cut(s)	909, 1035, 1092
BisI	GCNGC	7 cut(s)	27, 348, 733, 798, 912, 915, 1044
BlpI	GCTNAGC	1 cut(s)	1128
BlsI	GCNGC	7 cut(s)	28, 349, 734, 799, 913, 916, 1045
BmcAI	AGTACT	1 cut(s)	599
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	436
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	1 cut(s)	850
BmuI	ACTGGG	1 cut(s)	902
BpmI	CTGGAG	1 cut(s)	592
Bpu1102I	GCTNAGC	1 cut(s)	1128
Bpu14I	TTCGAA	1 cut(s)	932
BpuEI	CTTGAG	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	436
Bsa29I	ATCGAT	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	4 cut(s)	20, 220, 609, 897
Bse8I	GATNNNNATC	1 cut(s)	428
BseCI	ATCGAT	1 cut(s)	246
BseJI	GATNNNNATC	1 cut(s)	428
BseMII	CTCAG	4 cut(s)	608, 618, 654, 1142
BseNI	ACTGG	4 cut(s)	20, 220, 609, 897
BseXI	GCAGC	6 cut(s)	13, 359, 719, 809, 901, 923
BsgI	GTGCAG	2 cut(s)	366, 718
Bsh1236I	CGCG	2 cut(s)	360, 1046
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	518, 966
BshVI	ATCGAT	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	204, 436
BslFI	GGGAC	2 cut(s)	735, 1034
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	735, 1034
BsnI	GGCC	2 cut(s)	518, 966
Bsp119I	TTCGAA	1 cut(s)	932
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	835, 1067
Bsp1720I	GCTNAGC	1 cut(s)	1128
Bsp68I	TCGCGA	1 cut(s)	360
BspACI	CCGC	3 cut(s)	29, 757, 1044
BspANI	GGCC	2 cut(s)	518, 966
BspCNI	CTCAG	4 cut(s)	607, 619, 655, 1141
BspDI	ATCGAT	1 cut(s)	246
BspFNI	CGCG	2 cut(s)	360, 1046
BspMAI	CTGCAG	2 cut(s)	913, 1096
BspPI	GGATC	1 cut(s)	843
BspT104I	TTCGAA	1 cut(s)	932
BsrFI	RCCGGY	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	4 cut(s)	20, 220, 609, 897
BssAI	RCCGGY	1 cut(s)	203
BssMI	GATC	2 cut(s)	835, 1067
BssSI	CACGAG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	419
Bst4CI	ACNGT	4 cut(s)	233, 408, 510, 807
Bst6I	CTCTTC	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstAUI	TGTACA	1 cut(s)	681
BstBI	TTCGAA	1 cut(s)	932
BstC8I	GCNNGC	2 cut(s)	129, 757
BstDEI	CTNAG	4 cut(s)	594, 627, 663, 1128
BstFNI	CGCG	2 cut(s)	360, 1046
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	838, 1070
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	2 cut(s)	835, 1067
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 209, 344, 752
BstNSI	RCATGY	2 cut(s)	61, 777
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	3 cut(s)	909, 1035, 1092
BstUI	CGCG	2 cut(s)	360, 1046
BstV1I	GCAGC	6 cut(s)	13, 359, 719, 809, 901, 923
Bsu15I	ATCGAT	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	518, 966
BsuTUI	ATCGAT	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	1056
BtsIMutI	CAGTG	4 cut(s)	27, 515, 624, 1056
BtuMI	TCGCGA	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	129, 757
CaiI	CAGNNNCTG	2 cut(s)	26, 917
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	486
ClaI	ATCGAT	1 cut(s)	246
Csp6I	GTAC	3 cut(s)	98, 598, 682
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	4 cut(s)	58, 397, 774, 990
CviQI	GTAC	3 cut(s)	98, 598, 682
DdeI	CTNAG	4 cut(s)	594, 627, 663, 1128
DpnI	GATC	2 cut(s)	837, 1069
DpnII	GATC	2 cut(s)	835, 1067
EaeI	YGGCCR	2 cut(s)	516, 964
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	486
EcoRI	GAATTC	1 cut(s)	354
FaeI	CATG	4 cut(s)	61, 400, 777, 993
FaqI	GGGAC	2 cut(s)	735, 1034
FatI	CATG	4 cut(s)	57, 396, 773, 989
FauI	CCCGC	1 cut(s)	764
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	7 cut(s)	27, 348, 733, 798, 912, 915, 1044
Fsp4HI	GCNGC	7 cut(s)	27, 348, 733, 798, 912, 915, 1044
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	7 cut(s)	27, 348, 733, 798, 912, 915, 1044
GsuI	CTGGAG	1 cut(s)	592
HaeIII	GGCC	2 cut(s)	518, 966
HapII	CCGG	2 cut(s)	204, 436
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	61, 400, 777, 993
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	8 cut(s)	122, 158, 390, 415, 605, 921, 1026, 1053
HpaII	CCGG	2 cut(s)	204, 436
HphI	GGTGA	2 cut(s)	25, 971
Hpy166II	GTNNAC	5 cut(s)	175, 481, 621, 781, 974
Hpy188I	TCNGA	3 cut(s)	313, 664, 1067
Hpy188III	TCNNGA	3 cut(s)	359, 419, 900
Hpy8I	GTNNAC	5 cut(s)	175, 481, 621, 781, 974
HpyAV	CCTTC	1 cut(s)	694
HpyCH4III	ACNGT	4 cut(s)	233, 408, 510, 807
HpyCH4IV	ACGT	2 cut(s)	477, 936
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 209, 344, 752
HpyF3I	CTNAG	4 cut(s)	594, 627, 663, 1128
HpySE526I	ACGT	2 cut(s)	477, 936
Hsp92II	CATG	4 cut(s)	61, 400, 777, 993
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	835, 1067
LmnI	GCTCC	1 cut(s)	692
Lsp1109I	GCAGC	6 cut(s)	13, 359, 719, 809, 901, 923
LweI	GCATC	1 cut(s)	850
MaeII	ACGT	2 cut(s)	477, 936
MalI	GATC	2 cut(s)	837, 1069
MboI	GATC	2 cut(s)	835, 1067
MboII	GAAGA	5 cut(s)	63, 100, 231, 374, 472
MfeI	CAATTG	1 cut(s)	377
MlsI	TGGCCA	2 cut(s)	518, 966
MluNI	TGGCCA	2 cut(s)	518, 966
MlyI	GAGTC	2 cut(s)	116, 599
MmeI	TCCRAC	2 cut(s)	532, 694
MnlI	CCTC	3 cut(s)	366, 456, 603
Mox20I	TGGCCA	2 cut(s)	518, 966
MscI	TGGCCA	2 cut(s)	518, 966
MseI	TTAA	9 cut(s)	81, 303, 410, 810, 854, 879, 953, 1086, 1140
MslI	CAYNNNNRTG	2 cut(s)	56, 498
Msp20I	TGGCCA	2 cut(s)	518, 966
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	2 cut(s)	204, 436
MspR9I	CCNGG	1 cut(s)	436
MunI	CAATTG	1 cut(s)	377
MvnI	CGCG	2 cut(s)	360, 1046
MwoI	GCNNNNNNNGC	4 cut(s)	35, 209, 344, 752
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	2 cut(s)	835, 1067
NlaIII	CATG	4 cut(s)	61, 400, 777, 993
NruI	TCGCGA	1 cut(s)	360
NspI	RCATGY	2 cut(s)	61, 777
NspV	TTCGAA	1 cut(s)	932
PfeI	GAWTC	6 cut(s)	158, 390, 415, 921, 1026, 1053
PfoI	TCCNGGA	1 cut(s)	434
PkrI	GCNGC	7 cut(s)	28, 349, 734, 799, 913, 916, 1045
PleI	GAGTC	2 cut(s)	116, 599
PpsI	GAGTC	2 cut(s)	116, 599
PpuMI	RGGWCCY	1 cut(s)	486
PshBI	ATTAAT	2 cut(s)	1086, 1140
Psp1406I	AACGTT	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	486
PspPPI	RGGWCCY	1 cut(s)	486
PstI	CTGCAG	2 cut(s)	913, 1096
PstNI	CAGNNNCTG	2 cut(s)	26, 917
PvuII	CAGCTG	1 cut(s)	914
RruI	TCGCGA	1 cut(s)	360
RsaI	GTAC	3 cut(s)	99, 599, 683
RsaNI	GTAC	3 cut(s)	98, 598, 682
RseI	CAYNNNNRTG	2 cut(s)	56, 498
SaqAI	TTAA	9 cut(s)	81, 303, 410, 810, 854, 879, 953, 1086, 1140
SatI	GCNGC	7 cut(s)	27, 348, 733, 798, 912, 915, 1044
Sau3AI	GATC	2 cut(s)	835, 1067
Sau96I	GGNCC	1 cut(s)	486
ScaI	AGTACT	1 cut(s)	599
SchI	GAGTC	2 cut(s)	116, 599
ScrFI	CCNGG	1 cut(s)	436
SfaNI	GCATC	1 cut(s)	850
SfcI	CTRYAG	3 cut(s)	909, 1035, 1092
SfuI	TTCGAA	1 cut(s)	932
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	486
SmiMI	CAYNNNNRTG	2 cut(s)	56, 498
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
SsiI	CCGC	3 cut(s)	29, 757, 1044
SspI	AATATT	1 cut(s)	659
StyD4I	CCNGG	1 cut(s)	434
TaaI	ACNGT	4 cut(s)	233, 408, 510, 807
TaiI	ACGT	2 cut(s)	480, 939
TaqI	TCGA	4 cut(s)	195, 235, 246, 932
TatI	WGTACW	2 cut(s)	597, 681
TauI	GCSGC	1 cut(s)	1046
TfiI	GAWTC	6 cut(s)	158, 390, 415, 921, 1026, 1053
Tru1I	TTAA	9 cut(s)	81, 303, 410, 810, 854, 879, 953, 1086, 1140
Tru9I	TTAA	9 cut(s)	81, 303, 410, 810, 854, 879, 953, 1086, 1140
TscAI	CASTG	4 cut(s)	27, 515, 631, 1063
TseI	GCWGC	6 cut(s)	26, 347, 732, 797, 911, 914
TspDTI	ATGAA	4 cut(s)	100, 803, 859, 972
TspGWI	ACGGA	2 cut(s)	417, 1038
TspRI	CASTG	4 cut(s)	27, 515, 631, 1063
VpaK11BI	GGWCC	1 cut(s)	486
VspI	ATTAAT	2 cut(s)	1086, 1140
XapI	RAATTY	4 cut(s)	354, 850, 866, 984
XceI	RCATGY	2 cut(s)	61, 777
XmiI	GTMKAC	1 cut(s)	780
ZrmI	AGTACT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.