Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

8423180 .. 8425067

Gene Structure 1888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29306

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTTTTCAGGTGAAACCAGTGGCTGCGGTAATTGCTTTATCTTTGGTCATAAACATGCAACAACATTCTTCTTGTGTTAATGGAGTGCCAAAAGTACCTTGTTTCTTCATTTTTGGAGACTCGCTCGCTGACAATGGCAACAACAACTTGCTTGATTCTTTGGCTAAAGTCAACTACACACCGTATGGTATCGACTTCGCCGGTGGCGCAACTGGAAGATTTACCAACGGTCGAACCACCATTGATATATTATTTTGCTTTGTGCTCTCTAAAAGACTCAACTTCTGGGTTTTGACAACTACATTAATTCCACCATCTGTCTTGCTTAATAGCTCTGACATACTCAAAGGACTGAACTATGCTTCTGGTGCAGCAGGAATTCGCGAAGAAAGTGGGAGGCAATTGGGTGCAACAATCAGCATGGACGGACAGTTAAAGAATCACGAGATTACAATCTCCCGGATAGCTGACATACGTGGAGAGAAGAGGGCTAAAAACAACGTAAACAGGTCCTTACATTCAGGTGTAAAACAGTGGTTGGCCAAAAAACACTTGAGCGAGTGCTTATATTCAGTTGGAATGGGCAGTAATGACTACATCAACAATTACTTTTTGCCTCAGTACTATGACTCCAGTAAAAAGTTTACCACTGAGCAGTATGCTGAAGCTCTTATCAAACAATATTCTGAGCGAATAAAGAAGTTGTACAATTATGGAGCAAGGAAGGTGGTTTTGGTTGGAGTGGGACTAATAGGCTGCACCCCAACTGCAATTTCTGCCCGCAAAAATGGGTCTGCATGTGTAGACATAATGAACCTTGCAGCTCAACAATTTAACCAAAGGCAACAAAAATTTAACAGATGCCAAATTCATCTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

294

Amino Acids

32.53

Weight (kDa)

9.5

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	37 - 286	4.7e-18	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	807
AccII	CGCG	1 cut(s)	387
AciI	CCGC	2 cut(s)	29, 784
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	3 cut(s)	381, 854, 870
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	3 cut(s)	99, 626, 710
AjuI	GAANNNNNNNTTGG	4 cut(s)	719, 751, 760, 792
AluBI	AGCT	4 cut(s)	336, 470, 671, 827
AluI	AGCT	4 cut(s)	336, 470, 671, 827
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	114
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	543
ApeKI	GCWGC	4 cut(s)	26, 374, 759, 824
ApoI	RAATTY	3 cut(s)	381, 854, 870
AseI	ATTAAT	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	513
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	513
BalI	TGGCCA	1 cut(s)	545
BauI	CACGAG	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	4 cut(s)	13, 386, 746, 836
BccI	CCATC	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	114
BisI	GCNGC	4 cut(s)	27, 375, 760, 825
BlsI	GCNGC	4 cut(s)	28, 376, 761, 826
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	1 cut(s)	463
Bme18I	GGWCC	1 cut(s)	513
BmgT120I	GGNCC	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	854
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	1 cut(s)	619
BpuEI	CTTGAG	1 cut(s)	577
BpuMI	CCSGG	1 cut(s)	463
BsaAI	YACGTR	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	3 cut(s)	20, 220, 636
Bse8I	GATNNNNATC	1 cut(s)	455
BseJI	GATNNNNATC	1 cut(s)	455
BseMII	CTCAG	3 cut(s)	635, 645, 681
BseNI	ACTGG	3 cut(s)	20, 220, 636
BseXI	GCAGC	4 cut(s)	13, 386, 746, 836
BsgI	GTGCAG	2 cut(s)	393, 745
Bsh1236I	CGCG	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	545
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	204, 463
BslFI	GGGAC	1 cut(s)	762
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	762
BsnI	GGCC	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp1407I	TGTACA	1 cut(s)	708
Bsp68I	TCGCGA	1 cut(s)	387
BspACI	CCGC	2 cut(s)	29, 784
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	3 cut(s)	634, 646, 682
BspFNI	CGCG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	708
BsrI	ACTGG	3 cut(s)	20, 220, 636
BssAI	RCCGGY	1 cut(s)	203
BssSI	CACGAG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	446
Bst4CI	ACNGT	4 cut(s)	186, 233, 435, 537
Bst6I	CTCTTC	1 cut(s)	482
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstAUI	TGTACA	1 cut(s)	708
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	129, 784
BstDEI	CTNAG	3 cut(s)	621, 654, 690
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	114
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 209, 371, 779
BstNSI	RCATGY	2 cut(s)	61, 804
BstSCI	CCNGG	1 cut(s)	461
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	13, 386, 746, 836
BsuRI	GGCC	1 cut(s)	545
BtsIMutI	CAGTG	3 cut(s)	27, 542, 651
BtuMI	TCGCGA	1 cut(s)	387
Cac8I	GCNNGC	2 cut(s)	129, 784
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	513
Csp6I	GTAC	3 cut(s)	98, 625, 709
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	3 cut(s)	58, 424, 801
CviQI	GTAC	3 cut(s)	98, 625, 709
DdeI	CTNAG	3 cut(s)	621, 654, 690
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	687
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	381
FaeI	CATG	3 cut(s)	61, 427, 804
FaqI	GGGAC	1 cut(s)	762
FatI	CATG	3 cut(s)	57, 423, 800
FauI	CCCGC	1 cut(s)	791
FblI	GTMKAC	1 cut(s)	807
Fnu4HI	GCNGC	4 cut(s)	27, 375, 760, 825
Fsp4HI	GCNGC	4 cut(s)	27, 375, 760, 825
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	4 cut(s)	27, 375, 760, 825
GsuI	CTGGAG	1 cut(s)	619
HaeIII	GGCC	1 cut(s)	545
HapII	CCGG	2 cut(s)	204, 463
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	61, 427, 804
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	122, 158, 279, 442, 632
HpaII	CCGG	2 cut(s)	204, 463
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	4 cut(s)	175, 508, 648, 808
Hpy188I	TCNGA	2 cut(s)	340, 691
Hpy188III	TCNNGA	2 cut(s)	386, 446
Hpy8I	GTNNAC	4 cut(s)	175, 508, 648, 808
HpyAV	CCTTC	1 cut(s)	721
HpyCH4III	ACNGT	4 cut(s)	186, 233, 435, 537
HpyCH4IV	ACGT	2 cut(s)	478, 504
HpyCH4V	TGCA	7 cut(s)	61, 374, 413, 762, 773, 800, 824
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 209, 371, 779
HpyF3I	CTNAG	3 cut(s)	621, 654, 690
HpySE526I	ACGT	2 cut(s)	478, 504
Hsp92II	CATG	3 cut(s)	61, 427, 804
HspAI	GCGC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	719
Lsp1109I	GCAGC	4 cut(s)	13, 386, 746, 836
LweI	GCATC	1 cut(s)	854
MaeII	ACGT	2 cut(s)	478, 504
MboII	GAAGA	5 cut(s)	63, 100, 231, 401, 499
MfeI	CAATTG	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	545
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	3 cut(s)	116, 273, 626
MmeI	TCCRAC	2 cut(s)	559, 721
MnlI	CCTC	3 cut(s)	393, 483, 630
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	7 cut(s)	81, 308, 330, 437, 837, 858, 883
MslI	CAYNNNNRTG	2 cut(s)	56, 525
Msp20I	TGGCCA	1 cut(s)	545
MspI	CCGG	2 cut(s)	204, 463
MspR9I	CCNGG	1 cut(s)	463
MunI	CAATTG	1 cut(s)	404
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	4 cut(s)	35, 209, 371, 779
NciI	CCSGG	1 cut(s)	463
NlaIII	CATG	3 cut(s)	61, 427, 804
NruI	TCGCGA	1 cut(s)	387
NspI	RCATGY	2 cut(s)	61, 804
PfeI	GAWTC	2 cut(s)	158, 442
PfoI	TCCNGGA	1 cut(s)	461
PkrI	GCNGC	4 cut(s)	28, 376, 761, 826
PleI	GAGTC	3 cut(s)	116, 273, 626
PpsI	GAGTC	3 cut(s)	116, 273, 626
Ppu21I	YACGTR	1 cut(s)	479
PpuMI	RGGWCCY	1 cut(s)	513
PshBI	ATTAAT	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	513
PspPPI	RGGWCCY	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	26
RruI	TCGCGA	1 cut(s)	387
RsaI	GTAC	3 cut(s)	99, 626, 710
RsaNI	GTAC	3 cut(s)	98, 625, 709
RseI	CAYNNNNRTG	2 cut(s)	56, 525
SaqAI	TTAA	7 cut(s)	81, 308, 330, 437, 837, 858, 883
SatI	GCNGC	4 cut(s)	27, 375, 760, 825
Sau96I	GGNCC	1 cut(s)	513
ScaI	AGTACT	1 cut(s)	626
SchI	GAGTC	3 cut(s)	116, 273, 626
ScrFI	CCNGG	1 cut(s)	463
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	1 cut(s)	854
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	513
SmiMI	CAYNNNNRTG	2 cut(s)	56, 525
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
SsiI	CCGC	2 cut(s)	29, 784
SspI	AATATT	1 cut(s)	686
StyD4I	CCNGG	1 cut(s)	461
TaaI	ACNGT	4 cut(s)	186, 233, 435, 537
TaiI	ACGT	2 cut(s)	481, 507
TaqI	TCGA	2 cut(s)	195, 235
TatI	WGTACW	2 cut(s)	624, 708
TfiI	GAWTC	2 cut(s)	158, 442
Tru1I	TTAA	7 cut(s)	81, 308, 330, 437, 837, 858, 883
Tru9I	TTAA	7 cut(s)	81, 308, 330, 437, 837, 858, 883
TscAI	CASTG	3 cut(s)	27, 542, 658
TseI	GCWGC	4 cut(s)	26, 374, 759, 824
TspDTI	ATGAA	3 cut(s)	100, 830, 863
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	3 cut(s)	27, 542, 658
VpaK11BI	GGWCC	1 cut(s)	513
VspI	ATTAAT	1 cut(s)	308
XapI	RAATTY	3 cut(s)	381, 854, 870
XceI	RCATGY	2 cut(s)	61, 804
XmiI	GTMKAC	1 cut(s)	807
ZrmI	AGTACT	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.