Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

8405492 .. 8408306

Gene Structure 2815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCTTGTGGGATGAAGCCTTGGGTGGTGGTGATTGCTCTGACTTGGTTTTTAAGCCTGCAAGAACATTCTTCTTCTGTTCATGGAAAGCCACAAGTACCTTGTTTCTTCATTTTTGGAGACTCACTGGCTGATAATGGCAACAACAACGTGCTTGATACTTTGGCTAAAGTCAATTACCAGCCTTATGGTATCGACTTCCCTAGTGGCACAGCAACCGGAAGATTCAGCAACGGTCGAACCACCGTCGATGTTCTCTCTGAACTTTTAGGCTTTGACAACTATATTCCACCATTTGCTTTTGTTAATGGCTCTGTCGACATACTTAAAGGTGTGAACTATGCTTGTGGCGCTGCAGGAATTCGAAAAGAAACTGGCAAGCAATTGGGTGCAAGAATCAGCATGGGCAGACAGTTAAAGAACCACAAGATTATAATCTCACGCATTGTCGACATACTTGGGAAGAAGAGCTTAGCCCAAAAGCACTTAAACAAGTGCTTATATTCAGTTGGAATGGGCAGCAATGACTACATCAACAATTACTTCGTGCCTCAGTATTACCACACCAGCAAAAAATTTACCACTGAGCAATATGCTGAAGTTCTCATCAACCAATATTCTTGGGAAATACTGAAGTTGTACAAGTATGGAGCAAGGAAGGTGGCTTTGGTTGGATTGGGACTAATAGGCTGCACCCCAAGTGCAATTTCTTCCTTTGGCACAAATGGGTCAGCATGTGTAGACACATTGAACATTGCAGCGCAACTGTTTAACCGAAGGCTTGTATCACTTGTGGACAAGCTCAACAGCAATTTGACAGATGCAAAATTCATCTATATTAACAGCTTTGAAATGGGTTCTGGAGATCCTGCAGCTGCTGGCTTCACAGTTTCGAATGTTGGGTGTTGTGCGGTAAATGAAGTTGGTCAATGTAATGTTGACCATACTCCATGCAAAAACAGGACTGAGTACGTGTTCTGGGACGGATTCCATCCTACTGAAGCCTTGAACCGAATCACTGCAATCAGATCATACAATGCTTTTAACCCTGTAGACACTTATCCAATGGATATTAGTCACCTTGTTCAGCTACAAATTAATAACCCAGCAACTCCAGCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

374

Amino Acids

41.01

Weight (kDa)

8.57

Isoelectric Point (pI)

23.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	37 - 341	7.8e-33	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	434
AccI	GTMKAC	4 cut(s)	318, 450, 741, 1053
AciI	CCGC	1 cut(s)	911
AclWI	GGATC	1 cut(s)	860
AcsI	RAATTY	3 cut(s)	360, 575, 827
AcuI	CTGAAG	3 cut(s)	618, 653, 1020
AfaI	GTAC	3 cut(s)	99, 641, 971
AflIII	ACRYGT	1 cut(s)	972
AgsI	TTSAA	3 cut(s)	751, 851, 1009
AjuI	GAANNNNNNNTTGG	4 cut(s)	650, 682, 691, 723
AluBI	AGCT	6 cut(s)	471, 802, 846, 875, 1090, 1118
AluI	AGCT	6 cut(s)	471, 802, 846, 875, 1090, 1118
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	860
AlwNI	CAGNNNCTG	1 cut(s)	878
ApeKI	GCWGC	6 cut(s)	353, 519, 690, 758, 872, 875
ApoI	RAATTY	3 cut(s)	360, 575, 827
AseI	ATTAAT	1 cut(s)	1098
AspLEI	GCGC	2 cut(s)	353, 763
AsuHPI	GGTGA	2 cut(s)	43, 1070
AsuII	TTCGAA	2 cut(s)	364, 893
BbvI	GCAGC	6 cut(s)	340, 531, 677, 770, 862, 884
BccI	CCATC	1 cut(s)	999
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	204, 1123
BfmI	CTRYAG	3 cut(s)	354, 870, 1050
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	6 cut(s)	354, 520, 691, 759, 873, 876
BlpI	GCTNAGC	1 cut(s)	472
BlsI	GCNGC	6 cut(s)	355, 521, 692, 760, 874, 877
BmsI	GCATC	1 cut(s)	811
BpmI	CTGGAG	2 cut(s)	882, 1098
Bpu1102I	GCTNAGC	1 cut(s)	472
Bpu14I	TTCGAA	2 cut(s)	364, 893
BsaAI	YACGTR	1 cut(s)	973
BsaBI	GATNNNNATC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	132, 379
Bse3DI	GCAATG	2 cut(s)	529, 753
Bse8I	GATNNNNATC	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	2 cut(s)	18, 991
BseJI	GATNNNNATC	1 cut(s)	434
BseMI	GCAATG	2 cut(s)	529, 753
BseMII	CTCAG	3 cut(s)	566, 576, 957
BseNI	ACTGG	2 cut(s)	132, 379
BseXI	GCAGC	6 cut(s)	340, 531, 677, 770, 862, 884
BseYI	CCCAGC	1 cut(s)	1105
BsgI	GTGCAG	1 cut(s)	676
Bsh1285I	CGRYCG	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	693, 995
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	693, 995
Bsp119I	TTCGAA	2 cut(s)	364, 893
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	2 cut(s)	865, 1028
Bsp1720I	GCTNAGC	1 cut(s)	472
BspACI	CCGC	1 cut(s)	911
BspCNI	CTCAG	3 cut(s)	565, 577, 958
BspMAI	CTGCAG	2 cut(s)	358, 874
BspPI	GGATC	1 cut(s)	860
BspQI	GCTCTTC	1 cut(s)	461
BspT104I	TTCGAA	2 cut(s)	364, 893
BsrDI	GCAATG	2 cut(s)	529, 753
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	132, 379
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	865, 1028
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	5 cut(s)	236, 247, 414, 768, 889
Bst6I	CTCTTC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	639
BstBAI	YACGTR	1 cut(s)	973
BstBI	TTCGAA	2 cut(s)	364, 893
BstC8I	GCNNGC	3 cut(s)	59, 380, 880
BstDEI	CTNAG	4 cut(s)	472, 552, 585, 966
BstF5I	GGATG	2 cut(s)	18, 991
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	353, 763
BstKTI	GATC	2 cut(s)	868, 1031
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	2 cut(s)	865, 1028
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 1115
BstNSI	RCATGY	1 cut(s)	738
BstSFI	CTRYAG	3 cut(s)	354, 870, 1050
BstV1I	GCAGC	6 cut(s)	340, 531, 677, 770, 862, 884
BstX2I	RGATCY	1 cut(s)	865
BstXI	CCANNNNNNTGG	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	865
BtsCI	GGATG	2 cut(s)	18, 991
BtsI	GCAGTG	1 cut(s)	1017
BtsIMutI	CAGTG	3 cut(s)	125, 582, 1017
Cac8I	GCNNGC	3 cut(s)	59, 380, 880
CaiI	CAGNNNCTG	1 cut(s)	878
CfoI	GCGC	2 cut(s)	353, 763
Csp6I	GTAC	3 cut(s)	98, 640, 970
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	4 cut(s)	83, 403, 735, 951
CviQI	GTAC	3 cut(s)	98, 640, 970
DdeI	CTNAG	4 cut(s)	472, 552, 585, 966
DpnI	GATC	2 cut(s)	867, 1030
DpnII	GATC	2 cut(s)	865, 1028
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	20
Eco57I	CTGAAG	3 cut(s)	618, 653, 1020
EcoRI	GAATTC	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	4 cut(s)	86, 406, 738, 954
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	2 cut(s)	693, 995
FatI	CATG	4 cut(s)	82, 402, 734, 950
FblI	GTMKAC	4 cut(s)	318, 450, 741, 1053
Fnu4HI	GCNGC	6 cut(s)	354, 520, 691, 759, 873, 876
FokI	GGATG	2 cut(s)	25, 978
Fsp4HI	GCNGC	6 cut(s)	354, 520, 691, 759, 873, 876
FspBI	CTAG	2 cut(s)	204, 1123
GlaI	GCGC	2 cut(s)	352, 762
GluI	GCNGC	6 cut(s)	354, 520, 691, 759, 873, 876
GsaI	CCCAGC	1 cut(s)	1109
GsuI	CTGGAG	2 cut(s)	882, 1098
HaeII	RGCGCY	1 cut(s)	354
HapII	CCGG	1 cut(s)	219
HhaI	GCGC	2 cut(s)	353, 763
Hin1II	CATG	4 cut(s)	86, 406, 738, 954
Hin6I	GCGC	2 cut(s)	351, 761
HinP1I	GCGC	2 cut(s)	351, 761
HincII	GTYRAC	3 cut(s)	319, 451, 940
HindII	GTYRAC	3 cut(s)	319, 451, 940
HinfI	GANTC	5 cut(s)	122, 225, 396, 987, 1014
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	2 cut(s)	43, 1070
Hpy166II	GTNNAC	7 cut(s)	319, 337, 451, 742, 796, 940, 1054
Hpy188I	TCNGA	3 cut(s)	42, 262, 1028
Hpy188III	TCNNGA	1 cut(s)	861
Hpy8I	GTNNAC	7 cut(s)	319, 337, 451, 742, 796, 940, 1054
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	652, 771
HpyCH4III	ACNGT	5 cut(s)	236, 247, 414, 768, 889
HpyCH4IV	ACGT	2 cut(s)	150, 972
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 1115
HpyF3I	CTNAG	4 cut(s)	472, 552, 585, 966
HpySE526I	ACGT	2 cut(s)	150, 972
Hsp92II	CATG	4 cut(s)	86, 406, 738, 954
HspAI	GCGC	2 cut(s)	351, 761
Kzo9I	GATC	2 cut(s)	865, 1028
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	1 cut(s)	650
Lsp1109I	GCAGC	6 cut(s)	340, 531, 677, 770, 862, 884
LweI	GCATC	1 cut(s)	811
MaeI	CTAG	2 cut(s)	204, 1123
MaeII	ACGT	2 cut(s)	150, 972
MaeIII	GTNAC	1 cut(s)	1076
MalI	GATC	2 cut(s)	867, 1030
MboI	GATC	2 cut(s)	865, 1028
MboII	GAAGA	7 cut(s)	63, 66, 100, 234, 475, 478, 702
MfeI	CAATTG	1 cut(s)	383
MflI	RGATCY	1 cut(s)	865
MluCI	AATT	9 cut(s)	175, 360, 383, 538, 575, 705, 811, 827, 1095
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	490, 652
MnlI	CCTC	1 cut(s)	561
MseI	TTAA	9 cut(s)	53, 306, 327, 416, 488, 771, 840, 1044, 1098
MspA1I	CMGCKG	1 cut(s)	875
MspI	CCGG	1 cut(s)	219
MunI	CAATTG	1 cut(s)	383
MwoI	GCNNNNNNNGC	2 cut(s)	350, 1115
NdeII	GATC	2 cut(s)	865, 1028
NlaIII	CATG	4 cut(s)	86, 406, 738, 954
NmuCI	GTSAC	1 cut(s)	1076
NspI	RCATGY	1 cut(s)	738
NspV	TTCGAA	2 cut(s)	364, 893
PciSI	GCTCTTC	1 cut(s)	461
PfeI	GAWTC	4 cut(s)	225, 396, 987, 1014
PkrI	GCNGC	6 cut(s)	355, 521, 692, 760, 874, 877
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	973
PshBI	ATTAAT	1 cut(s)	1098
PsiI	TTATAA	1 cut(s)	434
PspFI	CCCAGC	1 cut(s)	1105
PstI	CTGCAG	2 cut(s)	358, 874
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	1 cut(s)	865
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	3 cut(s)	99, 641, 971
RsaNI	GTAC	3 cut(s)	98, 640, 970
SalI	GTCGAC	2 cut(s)	317, 449
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	9 cut(s)	53, 306, 327, 416, 488, 771, 840, 1044, 1098
SatI	GCNGC	6 cut(s)	354, 520, 691, 759, 873, 876
Sau3AI	GATC	2 cut(s)	865, 1028
SchI	GAGTC	1 cut(s)	116
SfaNI	GCATC	1 cut(s)	811
SfcI	CTRYAG	3 cut(s)	354, 870, 1050
SfuI	TTCGAA	2 cut(s)	364, 893
Sse9I	AATT	9 cut(s)	175, 360, 383, 538, 575, 705, 811, 827, 1095
SsiI	CCGC	1 cut(s)	911
SspI	AATATT	1 cut(s)	617
SspMI	CTAG	2 cut(s)	204, 1123
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	5 cut(s)	236, 247, 414, 768, 889
TaiI	ACGT	2 cut(s)	153, 975
TaqI	TCGA	7 cut(s)	195, 238, 249, 318, 364, 450, 893
TasI	AATT	9 cut(s)	175, 360, 383, 538, 575, 705, 811, 827, 1095
TatI	WGTACW	1 cut(s)	639
TfiI	GAWTC	4 cut(s)	225, 396, 987, 1014
Tru1I	TTAA	9 cut(s)	53, 306, 327, 416, 488, 771, 840, 1044, 1098
Tru9I	TTAA	9 cut(s)	53, 306, 327, 416, 488, 771, 840, 1044, 1098
TscAI	CASTG	3 cut(s)	132, 589, 1024
TseFI	GTSAC	1 cut(s)	1076
TseI	GCWGC	6 cut(s)	353, 519, 690, 758, 872, 875
Tsp45I	GTSAC	1 cut(s)	1076
TspDTI	ATGAA	5 cut(s)	29, 71, 100, 820, 933
TspGWI	ACGGA	1 cut(s)	999
TspRI	CASTG	3 cut(s)	132, 589, 1024
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	3 cut(s)	360, 575, 827
XceI	RCATGY	1 cut(s)	738
XmiI	GTMKAC	4 cut(s)	318, 450, 741, 1053
XspI	CTAG	2 cut(s)	204, 1123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.