Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

8815424 .. 8858715

Gene Structure 43292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG095900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCTTTTCAAGTGAAACCATTGGCGGTGGTAATTGCTCTATCTTGGGTTTTAAGCATGCAACAGCATTCTTCTTCTGTTAATGGAAAGCCACAAGTACCTTGTTTCTTCATTTTTGGAGACTCGCTGGCTGACAGTGGCAACAACAACTTGCTTGATTCTCTGGCTAAAGTCAACTACACGCCGTATGGTATCGACTTCCCTGGTGGCGCAACCGGAAGATTTACCAACGGTCGAACCACCATCGACGTACTATCTCAACTTCTGGGTTTTGACAACTACATTCCACCATTTTCCTTGCTTAATAGCTCTGACATACTCAAAGGACTGAACTATGCTTCTGGTGCAGCAGGAATTCGCAAAGAAAGCGGGAGGCAATTGGGTGCAAGAATCAGCATGGACAGACAGTTAAAGAATCACAAGATTACAATCTCCCGGATTGCTGACATACTTGGAAAGAAGAGGGCTAAAAGTCCCTACTTAAGCAAGTACTTGTACAAGTCCTTACGTTCAGGTGTAAAAAAGTGGTTGGCCAAAAAATACTTAAGCAAGTGCTTGTATTCAGTTGGAATGGGCAGTAATGACTACATCAACAATTACTTCTTGCCTCAGTACCATGACACCAGTAAAAAGTTTACCACTGAGCAATATGCTGAAGCCCTTATCAAACAATATTCTCAGCAAATAAAGAAGTTGCACAAATATGGTGCAAGGAAGGTGGTTTTGGTTGGAGTGGGACTGATAGGCTGCACCCCAACTGCAATTTCTGCTGGCACAAATGGGTCGGCATGTGTAGATATAATGAACCTTGCAGCTCTACAGTTTAACCAAAGGCTTGTATCACTTGTGGATCAGCTCAACAGCAATTTGACAAATGCAATGTTCATCTATATTAACAGCTTTGAAATGGGTTCTGGAGATCCAGCAGCTGCTGGCTTCACAGTTTCGAATGTTGGGTGTTGTGCGGTAAATGAAGTTGGTCAATGTAATGTTGACCATACTCCATGCAAGAACAGGACTGAGTACGTGTTCTGGGACGGATTCCATCCTACTGAAGCCTTGAACCGAATCACTGCAATCAGATCATACAATGCTTTTAACCCTGTAGACACTTATCCAATGGATATTAGTCACCTTGTTCAGCTACAAATTAATAACCCAGCAACTCCAGCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

392

Amino Acids

43.03

Weight (kDa)

9.32

Isoelectric Point (pI)

23.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	37 - 359	2.1e-33	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1107
AciI	CCGC	3 cut(s)	26, 369, 965
AclWI	GGATC	2 cut(s)	858, 914
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	2 cut(s)	675, 1074
AfaI	GTAC	6 cut(s)	99, 252, 491, 497, 614, 1025
AflII	CTTAAG	2 cut(s)	481, 544
AflIII	ACRYGT	1 cut(s)	1026
AgsI	TTSAA	3 cut(s)	11, 905, 1063
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	4 cut(s)	707, 739, 748, 780
AluBI	AGCT	7 cut(s)	309, 815, 856, 900, 929, 1144, 1172
AluI	AGCT	7 cut(s)	309, 815, 856, 900, 929, 1144, 1172
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	858, 914
AlwNI	CAGNNNCTG	2 cut(s)	929, 932
AoxI	GGCC	1 cut(s)	531
ApeKI	GCWGC	5 cut(s)	347, 747, 812, 926, 929
ApoI	RAATTY	1 cut(s)	354
AseI	ATTAAT	1 cut(s)	1152
AspLEI	GCGC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	1124
AsuII	TTCGAA	1 cut(s)	947
BalI	TGGCCA	1 cut(s)	533
BbvI	GCAGC	5 cut(s)	359, 734, 824, 916, 938
BccI	CCATC	2 cut(s)	251, 1053
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	1177
BfmI	CTRYAG	2 cut(s)	818, 1104
BfrI	CTTAAG	2 cut(s)	481, 544
BisI	GCNGC	5 cut(s)	348, 748, 813, 927, 930
BlsI	GCNGC	5 cut(s)	349, 749, 814, 928, 931
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	204, 436
BmrFI	CCNGG	2 cut(s)	204, 436
BpmI	CTGGAG	2 cut(s)	936, 1152
Bpu14I	TTCGAA	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	436
BsaAI	YACGTR	1 cut(s)	1027
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	624
Bse3DI	GCAATG	1 cut(s)	885
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	1045
BseJI	GATNNNNATC	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	4 cut(s)	623, 633, 692, 1011
BseNI	ACTGG	1 cut(s)	624
BseXI	GCAGC	5 cut(s)	359, 734, 824, 916, 938
BseYI	CCCAGC	1 cut(s)	1159
BsgI	GTGCAG	2 cut(s)	366, 733
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	533
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	216, 436
BslFI	GGGAC	3 cut(s)	459, 750, 1049
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	3 cut(s)	459, 750, 1049
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	533
Bsp119I	TTCGAA	1 cut(s)	947
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	850, 919, 1082
BspACI	CCGC	3 cut(s)	26, 369, 965
BspANI	GGCC	1 cut(s)	533
BspCNI	CTCAG	4 cut(s)	622, 634, 691, 1012
BspPI	GGATC	2 cut(s)	858, 914
BspT104I	TTCGAA	1 cut(s)	947
BspTI	CTTAAG	2 cut(s)	481, 544
BsrDI	GCAATG	1 cut(s)	885
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	3 cut(s)	850, 919, 1082
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	5 cut(s)	137, 233, 408, 822, 943
Bst6I	CTCTTC	1 cut(s)	455
BstAFI	CTTAAG	2 cut(s)	481, 544
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstAUI	TGTACA	1 cut(s)	495
BstBAI	YACGTR	1 cut(s)	1027
BstBI	TTCGAA	1 cut(s)	947
BstC8I	GCNNGC	4 cut(s)	59, 129, 772, 934
BstDEI	CTNAG	4 cut(s)	609, 642, 678, 1020
BstF5I	GGATG	1 cut(s)	1045
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	3 cut(s)	853, 922, 1085
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	850, 919, 1082
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 366, 767, 1169
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	2 cut(s)	61, 792
BstSCI	CCNGG	2 cut(s)	202, 434
BstSFI	CTRYAG	2 cut(s)	818, 1104
BstV1I	GCAGC	5 cut(s)	359, 734, 824, 916, 938
BstX2I	RGATCY	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	919
BsuRI	GGCC	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	1045
BtsI	GCAGTG	1 cut(s)	1071
BtsIMutI	CAGTG	3 cut(s)	142, 639, 1071
Cac8I	GCNNGC	4 cut(s)	59, 129, 772, 934
CaiI	CAGNNNCTG	2 cut(s)	929, 932
CfoI	GCGC	1 cut(s)	212
Csp6I	GTAC	6 cut(s)	98, 251, 490, 496, 613, 1024
CspCI	CAANNNNNGTGG	2 cut(s)	699, 734
CviAII	CATG	5 cut(s)	58, 397, 617, 789, 1005
CviQI	GTAC	6 cut(s)	98, 251, 490, 496, 613, 1024
DdeI	CTNAG	4 cut(s)	609, 642, 678, 1020
DpnI	GATC	3 cut(s)	852, 921, 1084
DpnII	GATC	3 cut(s)	850, 919, 1082
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco57I	CTGAAG	2 cut(s)	675, 1074
EcoRI	GAATTC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	5 cut(s)	61, 400, 620, 792, 1008
FaqI	GGGAC	3 cut(s)	459, 750, 1049
FatI	CATG	5 cut(s)	57, 396, 616, 788, 1004
FauI	CCCGC	1 cut(s)	362
FblI	GTMKAC	1 cut(s)	1107
Fnu4HI	GCNGC	5 cut(s)	348, 748, 813, 927, 930
FokI	GGATG	1 cut(s)	1032
Fsp4HI	GCNGC	5 cut(s)	348, 748, 813, 927, 930
FspBI	CTAG	1 cut(s)	1177
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	5 cut(s)	348, 748, 813, 927, 930
GsaI	CCCAGC	1 cut(s)	1163
GsuI	CTGGAG	2 cut(s)	936, 1152
HaeIII	GGCC	1 cut(s)	533
HapII	CCGG	2 cut(s)	216, 436
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	5 cut(s)	61, 400, 620, 792, 1008
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	2 cut(s)	175, 994
HindII	GTYRAC	2 cut(s)	175, 994
HinfI	GANTC	6 cut(s)	122, 158, 390, 415, 1041, 1068
HpaII	CCGG	2 cut(s)	216, 436
HphI	GGTGA	1 cut(s)	1124
Hpy166II	GTNNAC	4 cut(s)	175, 636, 994, 1108
Hpy188I	TCNGA	2 cut(s)	313, 1082
Hpy188III	TCNNGA	1 cut(s)	915
Hpy8I	GTNNAC	4 cut(s)	175, 636, 994, 1108
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	709
HpyCH4III	ACNGT	5 cut(s)	137, 233, 408, 822, 943
HpyCH4IV	ACGT	3 cut(s)	249, 508, 1026
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 366, 767, 1169
HpyF3I	CTNAG	4 cut(s)	609, 642, 678, 1020
HpySE526I	ACGT	3 cut(s)	249, 508, 1026
Hsp92II	CATG	5 cut(s)	61, 400, 620, 792, 1008
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	850, 919, 1082
Lsp1109I	GCAGC	5 cut(s)	359, 734, 824, 916, 938
MaeI	CTAG	1 cut(s)	1177
MaeII	ACGT	3 cut(s)	249, 508, 1026
MaeIII	GTNAC	1 cut(s)	1130
MalI	GATC	3 cut(s)	852, 921, 1084
MboI	GATC	3 cut(s)	850, 919, 1082
MboII	GAAGA	5 cut(s)	63, 66, 100, 231, 472
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	919
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	7 cut(s)	33, 354, 377, 595, 762, 865, 1149
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	547, 709
MnlI	CCTC	3 cut(s)	366, 456, 618
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	929
MspCI	CTTAAG	2 cut(s)	481, 544
MspI	CCGG	2 cut(s)	216, 436
MspR9I	CCNGG	2 cut(s)	204, 436
MunI	CAATTG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	4 cut(s)	344, 366, 767, 1169
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	3 cut(s)	850, 919, 1082
NlaIII	CATG	5 cut(s)	61, 400, 620, 792, 1008
NmuCI	GTSAC	1 cut(s)	1130
NspI	RCATGY	2 cut(s)	61, 792
NspV	TTCGAA	1 cut(s)	947
PaeI	GCATGC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	5 cut(s)	158, 390, 415, 1041, 1068
PfoI	TCCNGGA	1 cut(s)	434
PkrI	GCNGC	5 cut(s)	349, 749, 814, 928, 931
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	1027
PshBI	ATTAAT	1 cut(s)	1152
Psp6I	CCWGG	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	1159
PspGI	CCWGG	1 cut(s)	202
PstNI	CAGNNNCTG	2 cut(s)	929, 932
PsuI	RGATCY	1 cut(s)	919
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	6 cut(s)	99, 252, 491, 497, 614, 1025
RsaNI	GTAC	6 cut(s)	98, 251, 490, 496, 613, 1024
RseI	CAYNNNNRTG	1 cut(s)	702
SatI	GCNGC	5 cut(s)	348, 748, 813, 927, 930
Sau3AI	GATC	3 cut(s)	850, 919, 1082
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	204, 436
SfcI	CTRYAG	2 cut(s)	818, 1104
SfuI	TTCGAA	1 cut(s)	947
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	481, 544
SmoI	CTYRAG	2 cut(s)	481, 544
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	7 cut(s)	33, 354, 377, 595, 762, 865, 1149
SsiI	CCGC	3 cut(s)	26, 369, 965
SspI	AATATT	1 cut(s)	674
SspMI	CTAG	1 cut(s)	1177
StyD4I	CCNGG	2 cut(s)	202, 434
TaaI	ACNGT	5 cut(s)	137, 233, 408, 822, 943
TaiI	ACGT	3 cut(s)	252, 511, 1029
TaqI	TCGA	4 cut(s)	195, 235, 246, 947
TasI	AATT	7 cut(s)	33, 354, 377, 595, 762, 865, 1149
TatI	WGTACW	2 cut(s)	489, 495
TfiI	GAWTC	5 cut(s)	158, 390, 415, 1041, 1068
TscAI	CASTG	3 cut(s)	142, 646, 1078
TseFI	GTSAC	1 cut(s)	1130
TseI	GCWGC	5 cut(s)	347, 747, 812, 926, 929
Tsp45I	GTSAC	1 cut(s)	1130
TspDTI	ATGAA	4 cut(s)	100, 818, 874, 987
TspGWI	ACGGA	1 cut(s)	1053
TspRI	CASTG	3 cut(s)	142, 646, 1078
Vha464I	CTTAAG	2 cut(s)	481, 544
VspI	ATTAAT	1 cut(s)	1152
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	2 cut(s)	61, 792
XmiI	GTMKAC	1 cut(s)	1107
XspI	CTAG	1 cut(s)	1177
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.