Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

8310603 .. 8314314

Gene Structure 3712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG091400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTTGTGTAGTGAAGCTTTTGGTGGTGGTGATTTCTCTGTCTTGGGTACTAAGCATGCAACATTACTCCTCTGTTCTTGGAGAGCGAGAAGTGCCCTGTTTCTTCATTTTCGGGGACTCACTGGCTGATAGTGGCAACAACAATGTGCTTAATACTACGGCTAAGGTCAACTACGAGCCATATGGTATTGACTTTCCTTATGGACCAACTGGAAGGTTTTGCAACGGCCGCACCACAGTTGATATACTTACTGAACTTCTGGGATTTGAAAACTACATTCCACCATTTGCTTATGCTAATGACTCTGCCATACTCAGCGGTGTAAACTACGCATCCGGTGGATCAGGAATCCGAAGAGAAACCGGGATAACAACGGGCACAGTACTCAGCATGGGAAAACAATTAAAAAACCACAGGAAAACAATCATGCGCATCATCAGCATGCTAGGAAAGAAAAGCTTGGCCAGAAAGTACTTGAACAAGTGCTTATATTCAGTCGGAATGGGCAGCAATGACTACATTAACAATTACTTTTTACCTCAGTACTATAACACCAGTCAAGAATATACAGTTGAGGAATATGCAGTAGTTCTTGTCGAACAATATTCTCGGCAAATACTGAGATTGTATGAGTATGGAGCAAAGAAGGTTGTTCTGAGTGGACTGGGACTACTAGGCTGCACTCCTGCTGCAATTGCTAGTTATGGCACGAATGGATCATGTTACGAAGAACTCAACTATGCAGCCCAACTTTTCAACCAACAGCTTGTATCTCTTGTTGATCAGCTCAACAGCAATTTGACTGATGCAAAGTTCGTCTACATTAACAACTATGAAATCGGTTCAGCCAATACTACAGCTCTTGGATTCACTGTTTCGGATGCTGGGTGCTGTATACTTAACAGTGGTGGCCTGTGCGAGGCAGACATGACTCCATGCCAGAATAGGGCTGACTACGTGTTTTGGGACGGGTTCCATCCTACTGAAGCTTTTAATATGGTCAGTGCCAACAAAAGCTACAGTTCGGATGAGTCTGCCGACACTTATCCAATGGATATTAGTCACCTAGTTGAGCTAGAATTCAATCCTCTGGTGGCGGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

369

Amino Acids

40.69

Weight (kDa)

4.89

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	36 - 336	7.2e-34	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	434
AccI	GTMKAC	2 cut(s)	822, 898
AciI	CCGC	3 cut(s)	232, 321, 1100
AclWI	GGATC	2 cut(s)	352, 727
AcoI	YGGCCR	2 cut(s)	229, 465
AcsI	RAATTY	1 cut(s)	1082
AcuI	CTGAAG	1 cut(s)	1008
AfaI	GTAC	4 cut(s)	51, 387, 476, 548
AfiI	CCNNNNNNNGG	2 cut(s)	922, 949
AflIII	ACRYGT	1 cut(s)	960
AgsI	TTSAA	4 cut(s)	272, 481, 760, 1087
AluBI	AGCT	8 cut(s)	19, 462, 769, 790, 863, 992, 1020, 1078
AluI	AGCT	8 cut(s)	19, 462, 769, 790, 863, 992, 1020, 1078
AlwI	GGATC	2 cut(s)	352, 727
AoxI	GGCC	3 cut(s)	229, 465, 913
ApeKI	GCWGC	4 cut(s)	510, 681, 692, 746
ApoI	RAATTY	1 cut(s)	1082
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	43, 1058
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	2 cut(s)	99, 383
BalI	TGGCCA	1 cut(s)	467
BbvI	GCAGC	4 cut(s)	522, 668, 679, 758
BccI	CCATC	1 cut(s)	987
BceAI	ACGGC	2 cut(s)	177, 244
BclI	TGATCA	1 cut(s)	784
BcnI	CCSGG	1 cut(s)	367
BfaI	CTAG	5 cut(s)	449, 677, 702, 1070, 1079
BfmI	CTRYAG	2 cut(s)	858, 1021
BisI	GCNGC	5 cut(s)	232, 511, 682, 693, 747
BlsI	GCNGC	5 cut(s)	233, 512, 683, 694, 748
BmcAI	AGTACT	3 cut(s)	387, 476, 548
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	977
BmrFI	CCNGG	1 cut(s)	367
BmrI	ACTGGG	1 cut(s)	677
BmsI	GCATC	4 cut(s)	344, 444, 799, 874
BmuI	ACTGGG	1 cut(s)	677
Bpu10I	CCTNAGC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	367
BsaAI	YACGTR	1 cut(s)	961
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	2 cut(s)	922, 949
Bse1I	ACTGG	4 cut(s)	129, 217, 558, 672
Bse3DI	GCAATG	1 cut(s)	520
BseGI	GGATG	4 cut(s)	335, 889, 979, 1036
BseLI	CCNNNNNNNGG	2 cut(s)	922, 949
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	5 cut(s)	331, 403, 557, 614, 650
BseNI	ACTGG	4 cut(s)	129, 217, 558, 672
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	2 cut(s)	99, 383
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	4 cut(s)	522, 668, 679, 758
BseYI	CCCAGC	1 cut(s)	887
BsgI	GTGCAG	1 cut(s)	667
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	3 cut(s)	231, 467, 915
BsiEI	CGRYCG	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	339, 366
BslFI	GGGAC	3 cut(s)	131, 684, 983
BslI	CCNNNNNNNGG	2 cut(s)	922, 949
BsmFI	GGGAC	3 cut(s)	131, 684, 983
BsnI	GGCC	3 cut(s)	231, 467, 915
Bsp1286I	GDGCHC	2 cut(s)	99, 383
Bsp143I	GATC	3 cut(s)	344, 719, 784
BspACI	CCGC	3 cut(s)	232, 321, 1100
BspANI	GGCC	3 cut(s)	231, 467, 915
BspCNI	CTCAG	5 cut(s)	330, 402, 556, 615, 651
BspLI	GGNNCC	1 cut(s)	977
BspPI	GGATC	2 cut(s)	352, 727
BsrDI	GCAATG	1 cut(s)	520
BsrI	ACTGG	4 cut(s)	129, 217, 558, 672
BssMI	GATC	3 cut(s)	344, 719, 784
BssNAI	GTATAC	1 cut(s)	899
Bst1107I	GTATAC	1 cut(s)	899
Bst4CI	ACNGT	6 cut(s)	241, 385, 574, 877, 908, 1025
Bst6I	CTCTTC	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	961
BstC8I	GCNNGC	2 cut(s)	59, 446
BstDEI	CTNAG	7 cut(s)	53, 165, 317, 389, 543, 623, 659
BstENI	CCTNNNNNAGG	1 cut(s)	920
BstF5I	GGATG	4 cut(s)	335, 889, 979, 1036
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	3 cut(s)	347, 722, 787
BstMBI	GATC	3 cut(s)	344, 719, 784
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 231, 441, 698
BstNSI	RCATGY	2 cut(s)	61, 448
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	2 cut(s)	858, 1021
BstSLI	GKGCMC	2 cut(s)	99, 383
BstV1I	GCAGC	4 cut(s)	522, 668, 679, 758
BstZ17I	GTATAC	1 cut(s)	899
BstZI	CGGCCG	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	231, 467, 915
BtsCI	GGATG	4 cut(s)	335, 889, 979, 1036
BtsIMutI	CAGTG	4 cut(s)	122, 873, 913, 1012
Cac8I	GCNNGC	2 cut(s)	59, 446
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	4 cut(s)	50, 386, 475, 547
CviAII	CATG	7 cut(s)	58, 394, 430, 445, 723, 931, 939
CviQI	GTAC	4 cut(s)	50, 386, 475, 547
DdeI	CTNAG	7 cut(s)	53, 165, 317, 389, 543, 623, 659
DpnI	GATC	3 cut(s)	346, 721, 786
DpnII	GATC	3 cut(s)	344, 719, 784
EaeI	YGGCCR	2 cut(s)	229, 465
EagI	CGGCCG	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
EclXI	CGGCCG	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	206
Eco52I	CGGCCG	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	1008
EcoNI	CCTNNNNNAGG	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	1082
FaeI	CATG	7 cut(s)	61, 397, 433, 448, 726, 934, 942
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	3 cut(s)	131, 684, 983
FatI	CATG	7 cut(s)	57, 393, 429, 444, 722, 930, 938
FauNDI	CATATG	1 cut(s)	184
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	2 cut(s)	822, 898
Fnu4HI	GCNGC	5 cut(s)	232, 511, 682, 693, 747
FokI	GGATG	4 cut(s)	322, 896, 966, 1043
Fsp4HI	GCNGC	5 cut(s)	232, 511, 682, 693, 747
FspAI	RTGCGCAY	1 cut(s)	434
FspBI	CTAG	5 cut(s)	449, 677, 702, 1070, 1079
FspI	TGCGCA	1 cut(s)	434
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	5 cut(s)	232, 511, 682, 693, 747
GsaI	CCCAGC	1 cut(s)	891
HaeIII	GGCC	3 cut(s)	231, 467, 915
HapII	CCGG	2 cut(s)	339, 366
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	7 cut(s)	61, 397, 433, 448, 726, 934, 942
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	3 cut(s)	17, 460, 990
HinfI	GANTC	6 cut(s)	119, 305, 351, 870, 934, 1034
HpaII	CCGG	2 cut(s)	339, 366
HphI	GGTGA	2 cut(s)	43, 1058
Hpy166II	GTNNAC	5 cut(s)	172, 328, 665, 823, 899
Hpy188I	TCNGA	5 cut(s)	356, 503, 660, 883, 1030
Hpy188III	TCNNGA	2 cut(s)	348, 563
Hpy8I	GTNNAC	5 cut(s)	172, 328, 665, 823, 899
HpyAV	CCTTC	2 cut(s)	210, 643
HpyCH4III	ACNGT	6 cut(s)	241, 385, 574, 877, 908, 1025
HpyCH4IV	ACGT	1 cut(s)	960
HpyCH4V	TGCA	7 cut(s)	61, 225, 587, 684, 695, 746, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 231, 441, 698
HpyF3I	CTNAG	7 cut(s)	53, 165, 317, 389, 543, 623, 659
HpySE526I	ACGT	1 cut(s)	960
Hsp92II	CATG	7 cut(s)	61, 397, 433, 448, 726, 934, 942
HspAI	GCGC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	3 cut(s)	344, 719, 784
LmnI	GCTCC	1 cut(s)	641
Lsp1109I	GCAGC	4 cut(s)	522, 668, 679, 758
LweI	GCATC	4 cut(s)	344, 444, 799, 874
MaeI	CTAG	5 cut(s)	449, 677, 702, 1070, 1079
MaeII	ACGT	1 cut(s)	960
MaeIII	GTNAC	2 cut(s)	725, 1064
MalI	GATC	3 cut(s)	346, 721, 786
MboI	GATC	3 cut(s)	344, 719, 784
MboII	GAAGA	3 cut(s)	97, 369, 743
MfeI	CAATTG	1 cut(s)	696
MhlI	GDGCHC	2 cut(s)	99, 383
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	5 cut(s)	404, 529, 696, 799, 1082
MluNI	TGGCCA	1 cut(s)	467
MlyI	GAGTC	4 cut(s)	113, 299, 928, 1043
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	5 cut(s)	82, 552, 571, 916, 1101
Mox20I	TGGCCA	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	6 cut(s)	153, 407, 525, 828, 903, 996
MslI	CAYNNNNRTG	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	2 cut(s)	339, 366
MspR9I	CCNGG	1 cut(s)	367
MunI	CAATTG	1 cut(s)	696
MwoI	GCNNNNNNNGC	4 cut(s)	94, 231, 441, 698
NciI	CCSGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	3 cut(s)	344, 719, 784
NlaIII	CATG	7 cut(s)	61, 397, 433, 448, 726, 934, 942
NlaIV	GGNNCC	1 cut(s)	977
NmeAIII	GCCGAG	1 cut(s)	592
NmuCI	GTSAC	1 cut(s)	1064
NsbI	TGCGCA	1 cut(s)	434
NspI	RCATGY	2 cut(s)	61, 448
PaeI	GCATGC	2 cut(s)	61, 448
PfeI	GAWTC	2 cut(s)	351, 870
PkrI	GCNGC	5 cut(s)	233, 512, 683, 694, 748
PleI	GAGTC	4 cut(s)	113, 299, 928, 1042
PpsI	GAGTC	4 cut(s)	113, 299, 928, 1042
Ppu21I	YACGTR	1 cut(s)	961
PspFI	CCCAGC	1 cut(s)	887
PspN4I	GGNNCC	1 cut(s)	977
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	4 cut(s)	51, 387, 476, 548
RsaNI	GTAC	4 cut(s)	50, 386, 475, 547
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	6 cut(s)	153, 407, 525, 828, 903, 996
SatI	GCNGC	5 cut(s)	232, 511, 682, 693, 747
Sau3AI	GATC	3 cut(s)	344, 719, 784
Sau96I	GGNCC	1 cut(s)	206
ScaI	AGTACT	3 cut(s)	387, 476, 548
SchI	GAGTC	4 cut(s)	113, 299, 928, 1043
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	2 cut(s)	99, 383
SfaNI	GCATC	4 cut(s)	344, 444, 799, 874
SfcI	CTRYAG	2 cut(s)	858, 1021
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	443
SphI	GCATGC	2 cut(s)	61, 448
Sse9I	AATT	5 cut(s)	404, 529, 696, 799, 1082
SsiI	CCGC	3 cut(s)	232, 321, 1100
SspI	AATATT	1 cut(s)	608
SspMI	CTAG	5 cut(s)	449, 677, 702, 1070, 1079
StyD4I	CCNGG	1 cut(s)	365
TaaI	ACNGT	6 cut(s)	241, 385, 574, 877, 908, 1025
TaiI	ACGT	1 cut(s)	963
TaqI	TCGA	1 cut(s)	600
TasI	AATT	5 cut(s)	404, 529, 696, 799, 1082
TatI	WGTACW	3 cut(s)	385, 474, 546
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	351, 870
Tru1I	TTAA	6 cut(s)	153, 407, 525, 828, 903, 996
Tru9I	TTAA	6 cut(s)	153, 407, 525, 828, 903, 996
TscAI	CASTG	4 cut(s)	129, 880, 913, 1012
TseFI	GTSAC	1 cut(s)	1064
TseI	GCWGC	4 cut(s)	510, 681, 692, 746
Tsp45I	GTSAC	1 cut(s)	1064
TspDTI	ATGAA	2 cut(s)	97, 852
TspRI	CASTG	4 cut(s)	129, 880, 913, 1012
VpaK11BI	GGWCC	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	920
XapI	RAATTY	1 cut(s)	1082
XceI	RCATGY	2 cut(s)	61, 448
XmiI	GTMKAC	2 cut(s)	822, 898
XspI	CTAG	5 cut(s)	449, 677, 702, 1070, 1079
ZrmI	AGTACT	3 cut(s)	387, 476, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.