Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

9084752 .. 9087300

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G008410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCTTTTCAAGTGAAACCATTGGCGGTGGTAATTGCTCTATCTTGGGTTTTAAGCATGCAACAGCATTCTTCTTCTGTTAATGGAAAGCCACAAGTACCTTGTTTCTTCATTTTTGGAGACTCGCTGGCTGACAGTGGCAACAACAACTTGCTTGATTCTCTGGCTAAAGTCAACTACACGCCGTATGGTATCGACTTCCCTGGTGGCGCAACCGGAAGATTTACCAACGGTCGAACCACCATCGACGTACTATCTCAACTTCTGGGTTTTGACAACTACATTCCACCATTTTCCTTGCTTAATAGCTCTGACATACTCAAAGGACTGAACTATGCTTCTGGTGCAGCAGGAATTCTCAAAGAAAGCGGGAGGCAATTGGGTGCAAGAATCAGCATGGACAGACAGTTAAAGAATCACAAGATTACAATCTCCCGGATTGCTGACATACTTGGAAAGAAGAGGGCTAAAAGTCCCTACTTAAGCAAGTACTTGTACAAGTCCTTACGTTCAGGTGTAAAAAAGTGGTTGGCCAAAAAATACTTAAGCAAGTGCTTGTATTCAGTTGGAATGGGCAGTAATGACTACATCAACAATTACTTCTTGCCTCAGTACCATGACACCAGTAAAAAGTTTACCACTGAGCAATATGCTGAAGCCCTTATCAAACAATATTCTCAGCAAATAAAGAAGTTGCACAAATATGGTGCAAGGAAGGTGGTTTTGGTTGGAGTGGGACTGATAGGCTGCACCCCAACTGCAATTTCTGCTGGCACAAATGGGTCGGCATGTGTAGATATAATGAACCTTGCAGCTCTACAGTTTAACCAAAGGCTTGTATCACTTGTGGATCAGCTCAACAGCAATTTGACAAATGCAATGTTCATCTATATTAACAGCTTTGAAATGGGTTCTGGAGATCCAGCAGCTGCTGGATTTAAGGTTTCGAACGTTGGGTGTTGTGCGGTAAATGAAGTTGGTCAATGTAAATTTGACCAAAATCCATGCAAGAATAGGAGCGAGTATGTGTTTTGGGACGGATTCCATCCTACAGAAGCCTTGAACCAAATCAATGCAATAAGATCATACAGTAGTGCTATTAATTCTGCAGACACTTATCCAATGGACATCAGTCACCTTGCTAAGCTAAAATTTAATCATAGAGGGGCTGCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

392

Amino Acids

43.04

Weight (kDa)

9.42

Isoelectric Point (pI)

22.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	37 - 357	6.6e-33	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	26, 369, 965
AclI	AACGTT	1 cut(s)	951
AclWI	GGATC	2 cut(s)	858, 914
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	3 cut(s)	354, 989, 1151
AcuI	CTGAAG	1 cut(s)	675
AfaI	GTAC	5 cut(s)	99, 252, 491, 497, 614
AflII	CTTAAG	2 cut(s)	481, 544
AgsI	TTSAA	3 cut(s)	11, 905, 1063
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	4 cut(s)	707, 739, 748, 780
AluBI	AGCT	6 cut(s)	309, 815, 856, 900, 929, 1147
AluI	AGCT	6 cut(s)	309, 815, 856, 900, 929, 1147
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	858, 914
AlwNI	CAGNNNCTG	2 cut(s)	929, 932
AoxI	GGCC	1 cut(s)	531
ApeKI	GCWGC	6 cut(s)	347, 747, 812, 926, 929, 1169
ApoI	RAATTY	3 cut(s)	354, 989, 1151
AseI	ATTAAT	1 cut(s)	1101
AspLEI	GCGC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	1127
AsuII	TTCGAA	1 cut(s)	947
BalI	TGGCCA	1 cut(s)	533
BbvI	GCAGC	6 cut(s)	359, 734, 824, 916, 938, 1156
BccI	CCATC	2 cut(s)	251, 1053
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	3 cut(s)	818, 1050, 1107
BfrI	CTTAAG	2 cut(s)	481, 544
BisI	GCNGC	6 cut(s)	348, 748, 813, 927, 930, 1170
BlpI	GCTNAGC	1 cut(s)	1143
BlsI	GCNGC	6 cut(s)	349, 749, 814, 928, 931, 1171
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	204, 436
BmrFI	CCNGG	2 cut(s)	204, 436
BoxI	GACNNNNGTC	1 cut(s)	1131
BpmI	CTGGAG	1 cut(s)	936
Bpu1102I	GCTNAGC	1 cut(s)	1143
Bpu14I	TTCGAA	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	624
Bse3DI	GCAATG	1 cut(s)	885
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	1045
BseJI	GATNNNNATC	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	3 cut(s)	623, 633, 692
BseNI	ACTGG	1 cut(s)	624
BseXI	GCAGC	6 cut(s)	359, 734, 824, 916, 938, 1156
BsgI	GTGCAG	2 cut(s)	366, 733
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	533
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	216, 436
BslFI	GGGAC	3 cut(s)	459, 750, 1049
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	3 cut(s)	459, 750, 1049
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	533
Bsp119I	TTCGAA	1 cut(s)	947
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	850, 919, 1082
Bsp1720I	GCTNAGC	1 cut(s)	1143
BspACI	CCGC	3 cut(s)	26, 369, 965
BspANI	GGCC	1 cut(s)	533
BspCNI	CTCAG	3 cut(s)	622, 634, 691
BspMAI	CTGCAG	1 cut(s)	1111
BspPI	GGATC	2 cut(s)	858, 914
BspT104I	TTCGAA	1 cut(s)	947
BspTI	CTTAAG	2 cut(s)	481, 544
BsrDI	GCAATG	1 cut(s)	885
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	3 cut(s)	850, 919, 1082
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	5 cut(s)	137, 233, 408, 822, 1091
Bst6I	CTCTTC	1 cut(s)	455
BstAFI	CTTAAG	2 cut(s)	481, 544
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstAUI	TGTACA	1 cut(s)	495
BstBI	TTCGAA	1 cut(s)	947
BstC8I	GCNNGC	3 cut(s)	59, 129, 772
BstDEI	CTNAG	4 cut(s)	609, 642, 678, 1143
BstF5I	GGATG	1 cut(s)	1045
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	3 cut(s)	853, 922, 1085
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	850, 919, 1082
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 767
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	2 cut(s)	61, 792
BstPAI	GACNNNNGTC	1 cut(s)	1131
BstSCI	CCNGG	2 cut(s)	202, 434
BstSFI	CTRYAG	3 cut(s)	818, 1050, 1107
BstV1I	GCAGC	6 cut(s)	359, 734, 824, 916, 938, 1156
BstX2I	RGATCY	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	919
BsuRI	GGCC	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	1045
BtsIMutI	CAGTG	2 cut(s)	142, 639
Cac8I	GCNNGC	3 cut(s)	59, 129, 772
CaiI	CAGNNNCTG	2 cut(s)	929, 932
CfoI	GCGC	1 cut(s)	212
Csp6I	GTAC	5 cut(s)	98, 251, 490, 496, 613
CspCI	CAANNNNNGTGG	2 cut(s)	699, 734
CviAII	CATG	5 cut(s)	58, 397, 617, 789, 1005
CviQI	GTAC	5 cut(s)	98, 251, 490, 496, 613
DdeI	CTNAG	4 cut(s)	609, 642, 678, 1143
DpnI	GATC	3 cut(s)	852, 921, 1084
DpnII	GATC	3 cut(s)	850, 919, 1082
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	675
EcoRI	GAATTC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	5 cut(s)	61, 400, 620, 792, 1008
FaqI	GGGAC	3 cut(s)	459, 750, 1049
FatI	CATG	5 cut(s)	57, 396, 616, 788, 1004
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	6 cut(s)	348, 748, 813, 927, 930, 1170
FokI	GGATG	1 cut(s)	1032
Fsp4HI	GCNGC	6 cut(s)	348, 748, 813, 927, 930, 1170
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	6 cut(s)	348, 748, 813, 927, 930, 1170
GsuI	CTGGAG	1 cut(s)	936
HaeIII	GGCC	1 cut(s)	533
HapII	CCGG	2 cut(s)	216, 436
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	5 cut(s)	61, 400, 620, 792, 1008
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	122, 158, 390, 415, 1041
HpaII	CCGG	2 cut(s)	216, 436
HphI	GGTGA	1 cut(s)	1127
Hpy166II	GTNNAC	2 cut(s)	175, 636
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	915
Hpy8I	GTNNAC	2 cut(s)	175, 636
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	709
HpyCH4III	ACNGT	5 cut(s)	137, 233, 408, 822, 1091
HpyCH4IV	ACGT	3 cut(s)	249, 508, 951
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 767
HpyF3I	CTNAG	4 cut(s)	609, 642, 678, 1143
HpySE526I	ACGT	3 cut(s)	249, 508, 951
Hsp92II	CATG	5 cut(s)	61, 400, 620, 792, 1008
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	850, 919, 1082
LmnI	GCTCC	1 cut(s)	1017
Lsp1109I	GCAGC	6 cut(s)	359, 734, 824, 916, 938, 1156
MaeII	ACGT	3 cut(s)	249, 508, 951
MaeIII	GTNAC	1 cut(s)	1133
MalI	GATC	3 cut(s)	852, 921, 1084
MboI	GATC	3 cut(s)	850, 919, 1082
MboII	GAAGA	5 cut(s)	63, 66, 100, 231, 472
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	919
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	9 cut(s)	33, 354, 377, 595, 762, 865, 989, 1102, 1151
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	547, 709
MnlI	CCTC	4 cut(s)	366, 456, 618, 1157
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	929
MspCI	CTTAAG	2 cut(s)	481, 544
MspI	CCGG	2 cut(s)	216, 436
MspR9I	CCNGG	2 cut(s)	204, 436
MunI	CAATTG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	344, 767
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	3 cut(s)	850, 919, 1082
NlaIII	CATG	5 cut(s)	61, 400, 620, 792, 1008
NmuCI	GTSAC	1 cut(s)	1133
NspI	RCATGY	2 cut(s)	61, 792
NspV	TTCGAA	1 cut(s)	947
PaeI	GCATGC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	4 cut(s)	158, 390, 415, 1041
PfoI	TCCNGGA	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	349, 749, 814, 928, 931, 1171
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PshAI	GACNNNNGTC	1 cut(s)	1131
PshBI	ATTAAT	1 cut(s)	1101
Psp1406I	AACGTT	1 cut(s)	951
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	1111
PstNI	CAGNNNCTG	2 cut(s)	929, 932
PsuI	RGATCY	1 cut(s)	919
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	5 cut(s)	99, 252, 491, 497, 614
RsaNI	GTAC	5 cut(s)	98, 251, 490, 496, 613
RseI	CAYNNNNRTG	1 cut(s)	702
SatI	GCNGC	6 cut(s)	348, 748, 813, 927, 930, 1170
Sau3AI	GATC	3 cut(s)	850, 919, 1082
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	204, 436
SfcI	CTRYAG	3 cut(s)	818, 1050, 1107
SfuI	TTCGAA	1 cut(s)	947
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	481, 544
SmoI	CTYRAG	2 cut(s)	481, 544
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	9 cut(s)	33, 354, 377, 595, 762, 865, 989, 1102, 1151
SsiI	CCGC	3 cut(s)	26, 369, 965
SspI	AATATT	1 cut(s)	674
StyD4I	CCNGG	2 cut(s)	202, 434
TaaI	ACNGT	5 cut(s)	137, 233, 408, 822, 1091
TaiI	ACGT	3 cut(s)	252, 511, 954
TaqI	TCGA	4 cut(s)	195, 235, 246, 947
TasI	AATT	9 cut(s)	33, 354, 377, 595, 762, 865, 989, 1102, 1151
TatI	WGTACW	2 cut(s)	489, 495
TfiI	GAWTC	4 cut(s)	158, 390, 415, 1041
TscAI	CASTG	2 cut(s)	142, 646
TseFI	GTSAC	1 cut(s)	1133
TseI	GCWGC	6 cut(s)	347, 747, 812, 926, 929, 1169
Tsp45I	GTSAC	1 cut(s)	1133
TspDTI	ATGAA	4 cut(s)	100, 818, 874, 987
TspGWI	ACGGA	1 cut(s)	1053
TspRI	CASTG	2 cut(s)	142, 646
Vha464I	CTTAAG	2 cut(s)	481, 544
VspI	ATTAAT	1 cut(s)	1101
XapI	RAATTY	3 cut(s)	354, 989, 1151
XceI	RCATGY	2 cut(s)	61, 792
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.