Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Forward (+)

85995580 .. 85998680

Gene Structure 3101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCTTTTCAAGTGAAACCATTGGCGGTGGTAATTGCTCTATCTTGGGTTTTAAGCATGCAACAGCATTCTTCTTCTGTTAATGGAAAGCCACAAGTACCTTGTTTCTTCATTTTTGGAGACTCGCTGGCTGACAGTGGCAACAACAACTTGCTTGATTCTCTGGCTAAAGTCAACTACACGCCGTATGGTATTGACTTCCCTGGTGGCGCAACCGGAAGATTTACCAACGGTCGAACCACCATCGACGTACTATCAGGAATTCGCAAAGAAAGCGGGAGGCAATTGGGTGCAAGAATCAGCATGGACAGACAGTTAAAGAATCACAAGATTACAATCTCCCGGATTGCTGACATACTTGGAAAGAAGAGGGCTAAAAAGCACGTACACAAGTCCTTACATTCAGGTGTAAAAAAGTGGTTGGCCAAAAAATACTTAAGCAAGTGCTTATATTCAGTTGGAATGGGCAGTAATGACTACATCAACAATTACTTCTTGCCTCAGTACCATGACACCAGTAAAAAGTTTACCACTGAGCAATATGCTGAAGCCCTTATCAAACAATATTCTCAACAAATAAAGAAGTTGCACAAATATGGCGCAAGGAAGGTGGTTTTGGTTGGAGTGGGACTGATAGGCTGCACCCCAACTGCAATTTCTGCTGGCACAAATGGGTCTGCATGTGTAGATATAATGAACCTTGCAGCTCAACAGTTTAACCAAAGGCTTGTATCACTTGTGGATCAGCTCAACAGCAATTTGACAAATGCAAAGTTCATCTATATTAACAGCTTTGAAATGGCTTCTGGAGATCCTTCAGCTGCTGGATTTAAGGTTTCGAACGTTGGGTGTTGTGCGGTAAATGAAGTTGGTCAATGTAAATTTGACCAAACTCCATGCAAGAATAGGACTGAGTATGTGTTTTGGGACGGATTCCATCCTACTGAAGCCTTGAACCAAATCACTGCAATAAGATCATACAGTAGTGCTATTAATCCTGCAGACACTTATCCAATGGACATCAGTCACCTTGCTAAGCTAAAATTTAATCATACAGTAGCTGCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

356

Amino Acids

39.2

Weight (kDa)

9.51

Isoelectric Point (pI)

18.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	37 - 323	4.1e-29	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	26, 276, 857
AclI	AACGTT	1 cut(s)	843
AclWI	GGATC	2 cut(s)	750, 806
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	3 cut(s)	261, 881, 1043
AcuI	CTGAAG	3 cut(s)	567, 801, 966
AfaI	GTAC	4 cut(s)	99, 252, 387, 506
AflII	CTTAAG	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	11, 797, 955
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	4 cut(s)	599, 631, 640, 672
AluBI	AGCT	6 cut(s)	707, 748, 792, 821, 1039, 1061
AluI	AGCT	6 cut(s)	707, 748, 792, 821, 1039, 1061
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	750, 806
AlwNI	CAGNNNCTG	2 cut(s)	824, 1061
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	4 cut(s)	639, 704, 821, 1061
ApoI	RAATTY	3 cut(s)	261, 881, 1043
AseI	ATTAAT	1 cut(s)	993
AspLEI	GCGC	2 cut(s)	212, 602
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	1019
AsuII	TTCGAA	1 cut(s)	839
BalI	TGGCCA	1 cut(s)	425
BbvI	GCAGC	4 cut(s)	626, 716, 808, 1048
BccI	CCATC	2 cut(s)	251, 945
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	999
BfrI	CTTAAG	1 cut(s)	436
BisI	GCNGC	4 cut(s)	640, 705, 822, 1062
BlpI	GCTNAGC	1 cut(s)	1035
BlsI	GCNGC	4 cut(s)	641, 706, 823, 1063
Bme1390I	CCNGG	2 cut(s)	204, 343
BmrFI	CCNGG	2 cut(s)	204, 343
BoxI	GACNNNNGTC	1 cut(s)	1023
BpmI	CTGGAG	1 cut(s)	828
Bpu1102I	GCTNAGC	1 cut(s)	1035
Bpu14I	TTCGAA	1 cut(s)	839
BpuMI	CCSGG	1 cut(s)	343
BsaAI	YACGTR	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	937
BseJI	GATNNNNATC	1 cut(s)	335
BseMII	CTCAG	3 cut(s)	515, 525, 903
BseNI	ACTGG	1 cut(s)	516
BseXI	GCAGC	4 cut(s)	626, 716, 808, 1048
BsgI	GTGCAG	1 cut(s)	625
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	216, 343
BslFI	GGGAC	2 cut(s)	642, 941
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	642, 941
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	425
Bsp119I	TTCGAA	1 cut(s)	839
Bsp143I	GATC	3 cut(s)	742, 811, 974
Bsp1720I	GCTNAGC	1 cut(s)	1035
BspACI	CCGC	3 cut(s)	26, 276, 857
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	3 cut(s)	514, 526, 904
BspMAI	CTGCAG	1 cut(s)	1003
BspPI	GGATC	2 cut(s)	750, 806
BspT104I	TTCGAA	1 cut(s)	839
BspTI	CTTAAG	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	3 cut(s)	742, 811, 974
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	6 cut(s)	137, 233, 315, 714, 983, 1057
Bst6I	CTCTTC	1 cut(s)	362
BstAFI	CTTAAG	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstBAI	YACGTR	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	839
BstC8I	GCNNGC	3 cut(s)	59, 129, 664
BstDEI	CTNAG	4 cut(s)	501, 534, 912, 1035
BstF5I	GGATG	1 cut(s)	937
BstHHI	GCGC	2 cut(s)	212, 602
BstKTI	GATC	3 cut(s)	745, 814, 977
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	742, 811, 974
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 659
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	2 cut(s)	61, 684
BstPAI	GACNNNNGTC	1 cut(s)	1023
BstSCI	CCNGG	2 cut(s)	202, 341
BstSFI	CTRYAG	1 cut(s)	999
BstV1I	GCAGC	4 cut(s)	626, 716, 808, 1048
BstX2I	RGATCY	1 cut(s)	811
BstYI	RGATCY	1 cut(s)	811
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	937
BtsI	GCAGTG	1 cut(s)	963
BtsIMutI	CAGTG	3 cut(s)	142, 531, 963
Cac8I	GCNNGC	3 cut(s)	59, 129, 664
CaiI	CAGNNNCTG	2 cut(s)	824, 1061
CfoI	GCGC	2 cut(s)	212, 602
Csp6I	GTAC	4 cut(s)	98, 251, 386, 505
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	5 cut(s)	58, 304, 509, 681, 897
CviQI	GTAC	4 cut(s)	98, 251, 386, 505
DdeI	CTNAG	4 cut(s)	501, 534, 912, 1035
DpnI	GATC	3 cut(s)	744, 813, 976
DpnII	GATC	3 cut(s)	742, 811, 974
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco57I	CTGAAG	3 cut(s)	567, 801, 966
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	5 cut(s)	61, 307, 512, 684, 900
FaqI	GGGAC	2 cut(s)	642, 941
FatI	CATG	5 cut(s)	57, 303, 508, 680, 896
FauI	CCCGC	1 cut(s)	269
Fnu4HI	GCNGC	4 cut(s)	640, 705, 822, 1062
FokI	GGATG	1 cut(s)	924
Fsp4HI	GCNGC	4 cut(s)	640, 705, 822, 1062
GlaI	GCGC	2 cut(s)	211, 601
GluI	GCNGC	4 cut(s)	640, 705, 822, 1062
GsuI	CTGGAG	1 cut(s)	828
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	2 cut(s)	216, 343
HhaI	GCGC	2 cut(s)	212, 602
Hin1II	CATG	5 cut(s)	61, 307, 512, 684, 900
Hin6I	GCGC	2 cut(s)	210, 600
HinP1I	GCGC	2 cut(s)	210, 600
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	122, 158, 297, 322, 933
HpaII	CCGG	2 cut(s)	216, 343
HphI	GGTGA	1 cut(s)	1019
Hpy166II	GTNNAC	3 cut(s)	175, 388, 528
Hpy188III	TCNNGA	2 cut(s)	258, 807
Hpy8I	GTNNAC	3 cut(s)	175, 388, 528
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	601, 825
HpyCH4III	ACNGT	6 cut(s)	137, 233, 315, 714, 983, 1057
HpyCH4IV	ACGT	3 cut(s)	249, 384, 843
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 659
HpyF3I	CTNAG	4 cut(s)	501, 534, 912, 1035
HpySE526I	ACGT	3 cut(s)	249, 384, 843
Hsp92II	CATG	5 cut(s)	61, 307, 512, 684, 900
HspAI	GCGC	2 cut(s)	210, 600
Kzo9I	GATC	3 cut(s)	742, 811, 974
Lsp1109I	GCAGC	4 cut(s)	626, 716, 808, 1048
MaeII	ACGT	3 cut(s)	249, 384, 843
MaeIII	GTNAC	1 cut(s)	1025
MalI	GATC	3 cut(s)	744, 813, 976
MboI	GATC	3 cut(s)	742, 811, 974
MboII	GAAGA	5 cut(s)	63, 66, 100, 231, 379
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	1 cut(s)	811
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	8 cut(s)	33, 261, 284, 487, 654, 757, 881, 1043
MluNI	TGGCCA	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	439, 601
MnlI	CCTC	3 cut(s)	273, 363, 510
Mox20I	TGGCCA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	9 cut(s)	53, 81, 317, 437, 717, 786, 831, 993, 1047
MslI	CAYNNNNRTG	2 cut(s)	405, 594
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	821
MspCI	CTTAAG	1 cut(s)	436
MspI	CCGG	2 cut(s)	216, 343
MspR9I	CCNGG	2 cut(s)	204, 343
MunI	CAATTG	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	273, 659
NciI	CCSGG	1 cut(s)	343
NdeII	GATC	3 cut(s)	742, 811, 974
NlaIII	CATG	5 cut(s)	61, 307, 512, 684, 900
NmuCI	GTSAC	1 cut(s)	1025
NspI	RCATGY	2 cut(s)	61, 684
NspV	TTCGAA	1 cut(s)	839
PaeI	GCATGC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	4 cut(s)	158, 297, 322, 933
PfoI	TCCNGGA	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	641, 706, 823, 1063
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	385
PshAI	GACNNNNGTC	1 cut(s)	1023
PshBI	ATTAAT	1 cut(s)	993
Psp1406I	AACGTT	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	1003
PstNI	CAGNNNCTG	2 cut(s)	824, 1061
PsuI	RGATCY	1 cut(s)	811
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	4 cut(s)	99, 252, 387, 506
RsaNI	GTAC	4 cut(s)	98, 251, 386, 505
RseI	CAYNNNNRTG	2 cut(s)	405, 594
SaqAI	TTAA	9 cut(s)	53, 81, 317, 437, 717, 786, 831, 993, 1047
SatI	GCNGC	4 cut(s)	640, 705, 822, 1062
Sau3AI	GATC	3 cut(s)	742, 811, 974
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	204, 343
SfcI	CTRYAG	1 cut(s)	999
SfuI	TTCGAA	1 cut(s)	839
SmiMI	CAYNNNNRTG	2 cut(s)	405, 594
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	8 cut(s)	33, 261, 284, 487, 654, 757, 881, 1043
SsiI	CCGC	3 cut(s)	26, 276, 857
SspI	AATATT	1 cut(s)	566
StyD4I	CCNGG	2 cut(s)	202, 341
TaaI	ACNGT	6 cut(s)	137, 233, 315, 714, 983, 1057
TaiI	ACGT	3 cut(s)	252, 387, 846
TaqI	TCGA	3 cut(s)	235, 246, 839
TasI	AATT	8 cut(s)	33, 261, 284, 487, 654, 757, 881, 1043
TfiI	GAWTC	4 cut(s)	158, 297, 322, 933
Tru1I	TTAA	9 cut(s)	53, 81, 317, 437, 717, 786, 831, 993, 1047
Tru9I	TTAA	9 cut(s)	53, 81, 317, 437, 717, 786, 831, 993, 1047
TscAI	CASTG	3 cut(s)	142, 538, 970
TseFI	GTSAC	1 cut(s)	1025
TseI	GCWGC	4 cut(s)	639, 704, 821, 1061
Tsp45I	GTSAC	1 cut(s)	1025
TspDTI	ATGAA	4 cut(s)	100, 710, 766, 879
TspGWI	ACGGA	1 cut(s)	945
TspRI	CASTG	3 cut(s)	142, 538, 970
Vha464I	CTTAAG	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	993
XapI	RAATTY	3 cut(s)	261, 881, 1043
XceI	RCATGY	2 cut(s)	61, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.