Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Forward (+)

36291185 .. 36295501

Gene Structure 4317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1270700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCTGGTGGCACGAAACTATTGGCTGTGGTGATTGCTCTATCTTGGCTATCGAACATGCAGCAACTCGTTCAGGGAAAGCCACAAGTGCCTTGTTTTTTCATATTTGGAGACTCAGTAGCTGATCCTGGCAACAACAACAAGCTTCCCACATTGGCTAAAGTCAACTACAAGCCATATGGTATTGACTTCCCGGCTGGCCCAACAGGAAGGTTCTGCAATGGCCGAAACATCGTTGATTTTCTTGCTGAACTTCTGGGATTTGAAAACTACATTCCAGCATTTGCTTCTGCTAATGGCACGGAAATACTCCAAGGAGTGAACTATGCATCTGGTGCAGCAGGAATTAGAAAAGAAAGTGGAAAGCAGCTGGGTGCACGTATTAGCATGGGGGAACAGTTGAAGAATCACAGAACTACGGTGTCGCGCATTATCGACATATTTGGAAAGAAAAGCTTAGCCAAAAATCAATTAAACCAGTGCATATATTCAGTTGGAATGGGCAGCAATGACTACATCAACAATTACTTCATGCCTCAGTATTATACCACCAGTCAAAAATACACCCTTGAGGAATATGCTGATGTTCTTATTAAACAATACACTCGCCAAATACTGAGGTTGCACCAGTACGGAGCAAGGAAGGTGGCCTTGGTTGGACTGGGACTAATAGGCTGCACTCCAGATGCAATTAAGACCTATGGCACAAATGGGTCTGCATGTGTGGATATAATGAACAATGCATCCCAAATTTTCAACGGAAAACTTGTTTCTCTTGTGGACGAGCTCAATACCAATCTCACTGACTCACAATTTATCTATATCAACAGTTATGGAATGGGCTCAGGGGACCTTACATTAGCTGGGTTCAAGGTTTTGAATGCTGGGTGCTGTGAAGCAGATGAAGTTGGTCAGTGCATTCCTGATCTAACTCCATGCCAGAATAGGAGTGAATATGTGTTTTGGGACTCATTTCATCCTACTGAGGCCGGCAATTTGATCACTGCGAGCAGAACATACACAGCTTCTGAACCTTCAGACACATATCCTATGGATATGAGTCACTTAGCTGAGCTGCAAATTAATCCTCAAGTCAACGAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

369

Amino Acids

40.25

Weight (kDa)

5.65

Isoelectric Point (pI)

22.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	34 - 337	6.2e-33	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	427
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	750
AcuI	CTGAAG	1 cut(s)	1020
AfaI	GTAC	1 cut(s)	632
AgsI	TTSAA	5 cut(s)	266, 403, 757, 871, 880
AjnI	CCWGG	1 cut(s)	127
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AloI	GAACNNNNNNTCC	2 cut(s)	728, 760
AluBI	AGCT	9 cut(s)	122, 145, 370, 456, 787, 863, 1025, 1070, 1075
AluI	AGCT	9 cut(s)	122, 145, 370, 456, 787, 863, 1025, 1070, 1075
Alw21I	GWGCWC	2 cut(s)	379, 789
Alw26I	GTCTC	1 cut(s)	105
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	2 cut(s)	122, 1028
AoxI	GGCC	4 cut(s)	199, 223, 648, 987
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	6 cut(s)	61, 338, 367, 504, 675, 1075
ApoI	RAATTY	1 cut(s)	750
AseI	ATTAAT	1 cut(s)	1083
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	2 cut(s)	200, 850
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	850
BaeGI	GKGCMC	1 cut(s)	379
BanII	GRGCYC	2 cut(s)	789, 845
Bbv12I	GWGCWC	2 cut(s)	379, 789
BbvI	GCAGC	6 cut(s)	73, 350, 379, 516, 662, 1062
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	1 cut(s)	999
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	1105
BglII	AGATCT	1 cut(s)	1101
BisI	GCNGC	6 cut(s)	62, 339, 368, 505, 676, 1076
BlpI	GCTNAGC	2 cut(s)	457, 1071
BlsI	GCNGC	6 cut(s)	63, 340, 369, 506, 677, 1077
Bme1390I	CCNGG	2 cut(s)	129, 194
Bme18I	GGWCC	1 cut(s)	850
BmgT120I	GGNCC	2 cut(s)	200, 850
BmiI	GGNNCC	1 cut(s)	851
BmrFI	CCNGG	2 cut(s)	129, 194
BmrI	ACTGGG	1 cut(s)	671
BmsI	GCATC	3 cut(s)	338, 676, 752
BmuI	ACTGGG	1 cut(s)	671
BpmI	CTGGAG	1 cut(s)	666
Bpu10I	CCTNAGC	1 cut(s)	844
Bpu1102I	GCTNAGC	2 cut(s)	457, 1071
BpuEI	CTTGAG	2 cut(s)	590, 1074
BpuMI	CCSGG	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	380
BsaJI	CCNNGG	2 cut(s)	313, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bse118I	RCCGGY	1 cut(s)	989
Bse1I	ACTGG	4 cut(s)	478, 552, 628, 666
Bse3DI	GCAATG	2 cut(s)	226, 514
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	313, 651
BseGI	GGATG	2 cut(s)	743, 976
BseMI	GCAATG	2 cut(s)	226, 514
BseMII	CTCAG	6 cut(s)	129, 551, 608, 858, 975, 1062
BseNI	ACTGG	4 cut(s)	478, 552, 628, 666
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	6 cut(s)	73, 350, 379, 516, 662, 1062
BseYI	CCCAGC	3 cut(s)	370, 863, 884
BsgI	GTGCAG	2 cut(s)	357, 661
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	4 cut(s)	201, 225, 650, 989
BsiHKAI	GWGCWC	2 cut(s)	379, 789
BsiSI	CCGG	2 cut(s)	194, 990
BslFI	GGGAC	3 cut(s)	678, 863, 980
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	3 cut(s)	678, 863, 980
BsmI	GAATGC	2 cut(s)	886, 918
BsnI	GGCC	4 cut(s)	201, 225, 650, 989
Bsp1286I	GDGCHC	3 cut(s)	379, 789, 845
Bsp143I	GATC	4 cut(s)	124, 925, 999, 1101
Bsp1720I	GCTNAGC	2 cut(s)	457, 1071
BspANI	GGCC	4 cut(s)	201, 225, 650, 989
BspCNI	CTCAG	6 cut(s)	128, 550, 609, 857, 976, 1063
BspFNI	CGCG	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	851
BspPI	GGATC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	226, 514
BsrFI	RCCGGY	1 cut(s)	989
BsrI	ACTGG	4 cut(s)	478, 552, 628, 666
BssAI	RCCGGY	1 cut(s)	989
BssECI	CCNNGG	2 cut(s)	313, 651
BssMI	GATC	4 cut(s)	124, 925, 999, 1101
BssT1I	CCWWGG	2 cut(s)	313, 651
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	399, 421, 830
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	199, 991, 1009
BstDEI	CTNAG	8 cut(s)	115, 457, 537, 617, 844, 984, 1066, 1071
BstF5I	GGATG	2 cut(s)	743, 976
BstFNI	CGCG	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	4 cut(s)	127, 928, 1002, 1104
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	4 cut(s)	124, 925, 999, 1101
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 335
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	2 cut(s)	61, 723
BstSCI	CCNGG	2 cut(s)	127, 192
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	6 cut(s)	73, 350, 379, 516, 662, 1062
BstX2I	RGATCY	1 cut(s)	1101
BstYI	RGATCY	1 cut(s)	1101
BsuRI	GGCC	4 cut(s)	201, 225, 650, 989
BtsCI	GGATG	2 cut(s)	743, 976
BtsI	GCAGTG	1 cut(s)	1002
BtsIMutI	CAGTG	4 cut(s)	485, 801, 920, 1002
Cac8I	GCNNGC	3 cut(s)	199, 991, 1009
CaiI	CAGNNNCTG	2 cut(s)	122, 1028
CfoI	GCGC	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	989
Cfr13I	GGNCC	2 cut(s)	200, 850
Csp6I	GTAC	1 cut(s)	631
CspCI	CAANNNNNGTGG	2 cut(s)	627, 662
CviAII	CATG	5 cut(s)	58, 388, 532, 720, 936
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	8 cut(s)	115, 457, 537, 617, 844, 984, 1066, 1071
DpnI	GATC	4 cut(s)	126, 927, 1001, 1103
DpnII	GATC	4 cut(s)	124, 925, 999, 1101
EaeI	YGGCCR	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	787
Eco130I	CCWWGG	2 cut(s)	313, 651
Eco24I	GRGCYC	2 cut(s)	789, 845
Eco47I	GGWCC	1 cut(s)	850
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	1020
EcoICRI	GAGCTC	1 cut(s)	787
EcoO109I	RGGNCCY	1 cut(s)	850
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	313, 651
EcoT22I	ATGCAT	2 cut(s)	331, 745
EcoT38I	GRGCYC	2 cut(s)	789, 845
ErhI	CCWWGG	2 cut(s)	313, 651
FaeI	CATG	5 cut(s)	61, 391, 535, 723, 939
FalI	AAGNNNNNCTT	4 cut(s)	440, 472, 635, 667
FaqI	GGGAC	3 cut(s)	678, 863, 980
FatI	CATG	5 cut(s)	57, 387, 531, 719, 935
FauNDI	CATATG	1 cut(s)	178
FbaI	TGATCA	1 cut(s)	999
Fnu4HI	GCNGC	6 cut(s)	62, 339, 368, 505, 676, 1076
FokI	GGATG	2 cut(s)	730, 963
FriOI	GRGCYC	2 cut(s)	789, 845
Fsp4HI	GCNGC	6 cut(s)	62, 339, 368, 505, 676, 1076
FspBI	CTAG	1 cut(s)	1105
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	6 cut(s)	62, 339, 368, 505, 676, 1076
GsaI	CCCAGC	3 cut(s)	374, 867, 888
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	4 cut(s)	201, 225, 650, 989
HapII	CCGG	2 cut(s)	194, 990
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	5 cut(s)	61, 391, 535, 723, 939
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	2 cut(s)	166, 1096
HindII	GTYRAC	2 cut(s)	166, 1096
HindIII	AAGCTT	2 cut(s)	143, 454
HinfI	GANTC	5 cut(s)	113, 406, 806, 968, 1060
HpaII	CCGG	2 cut(s)	194, 990
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	5 cut(s)	166, 322, 377, 781, 1096
Hpy188I	TCNGA	2 cut(s)	1030, 1039
Hpy188III	TCNNGA	2 cut(s)	683, 923
Hpy8I	GTNNAC	5 cut(s)	166, 322, 377, 781, 1096
HpyAV	CCTTC	3 cut(s)	204, 637, 1044
HpyCH4III	ACNGT	3 cut(s)	399, 421, 830
HpyCH4IV	ACGT	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 335
HpyF3I	CTNAG	8 cut(s)	115, 457, 537, 617, 844, 984, 1066, 1071
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	5 cut(s)	61, 391, 535, 723, 939
HspAI	GCGC	1 cut(s)	427
KroI	GCCGGC	1 cut(s)	989
KroNI	GCCGGC	1 cut(s)	991
Ksp22I	TGATCA	1 cut(s)	999
Kzo9I	GATC	4 cut(s)	124, 925, 999, 1101
LmnI	GCTCC	1 cut(s)	635
Lsp1109I	GCAGC	6 cut(s)	73, 350, 379, 516, 662, 1062
LweI	GCATC	3 cut(s)	338, 676, 752
MaeI	CTAG	1 cut(s)	1105
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	1061
MalI	GATC	4 cut(s)	126, 927, 1001, 1103
MboI	GATC	4 cut(s)	124, 925, 999, 1101
MboII	GAAGA	1 cut(s)	415
MflI	RGATCY	1 cut(s)	1101
MhlI	GDGCHC	3 cut(s)	379, 789, 845
MluCI	AATT	8 cut(s)	345, 470, 523, 690, 750, 812, 994, 1080
MlyI	GAGTC	4 cut(s)	107, 800, 962, 1069
MmeI	TCCRAC	2 cut(s)	475, 637
MnlI	CCTC	5 cut(s)	546, 565, 612, 979, 1098
Mph1103I	ATGCAT	2 cut(s)	331, 745
MroNI	GCCGGC	1 cut(s)	989
MseI	TTAA	4 cut(s)	473, 594, 693, 1083
MspA1I	CMGCKG	1 cut(s)	370
MspI	CCGG	2 cut(s)	194, 990
MspR9I	CCNGG	2 cut(s)	129, 194
Mva1269I	GAATGC	2 cut(s)	886, 918
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	2 cut(s)	88, 335
NaeI	GCCGGC	1 cut(s)	991
NciI	CCSGG	1 cut(s)	194
NdeI	CATATG	1 cut(s)	178
NdeII	GATC	4 cut(s)	124, 925, 999, 1101
NgoMIV	GCCGGC	1 cut(s)	989
NlaIII	CATG	5 cut(s)	61, 391, 535, 723, 939
NlaIV	GGNNCC	1 cut(s)	851
NmuCI	GTSAC	1 cut(s)	1061
NsiI	ATGCAT	2 cut(s)	331, 745
NspI	RCATGY	2 cut(s)	61, 723
PctI	GAATGC	2 cut(s)	886, 918
PdiI	GCCGGC	1 cut(s)	991
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	6 cut(s)	63, 340, 369, 506, 677, 1077
PleI	GAGTC	4 cut(s)	107, 800, 962, 1068
PpsI	GAGTC	4 cut(s)	107, 800, 962, 1068
Ppu21I	YACGTR	1 cut(s)	380
PpuMI	RGGWCCY	1 cut(s)	850
PshBI	ATTAAT	1 cut(s)	1083
Psp124BI	GAGCTC	1 cut(s)	789
Psp5II	RGGWCCY	1 cut(s)	850
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	3 cut(s)	370, 863, 884
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	851
PspPI	GGNCC	2 cut(s)	200, 850
PspPPI	RGGWCCY	1 cut(s)	850
PstNI	CAGNNNCTG	2 cut(s)	122, 1028
PsuI	RGATCY	1 cut(s)	1101
PvuII	CAGCTG	1 cut(s)	370
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
SacI	GAGCTC	1 cut(s)	789
SaqAI	TTAA	4 cut(s)	473, 594, 693, 1083
SatI	GCNGC	6 cut(s)	62, 339, 368, 505, 676, 1076
Sau3AI	GATC	4 cut(s)	124, 925, 999, 1101
Sau96I	GGNCC	2 cut(s)	200, 850
SchI	GAGTC	4 cut(s)	107, 800, 962, 1069
ScrFI	CCNGG	2 cut(s)	129, 194
SduI	GDGCHC	3 cut(s)	379, 789, 845
SfaNI	GCATC	3 cut(s)	338, 676, 752
SinI	GGWCC	1 cut(s)	850
SmlI	CTYRAG	2 cut(s)	569, 1089
SmoI	CTYRAG	2 cut(s)	569, 1089
Sse9I	AATT	8 cut(s)	345, 470, 523, 690, 750, 812, 994, 1080
SspMI	CTAG	1 cut(s)	1105
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	2 cut(s)	127, 192
StyI	CCWWGG	2 cut(s)	313, 651
TaaI	ACNGT	3 cut(s)	399, 421, 830
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	53, 435
TasI	AATT	8 cut(s)	345, 470, 523, 690, 750, 812, 994, 1080
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	4 cut(s)	473, 594, 693, 1083
Tru9I	TTAA	4 cut(s)	473, 594, 693, 1083
TscAI	CASTG	4 cut(s)	485, 808, 920, 1009
TseFI	GTSAC	1 cut(s)	1061
TseI	GCWGC	6 cut(s)	61, 338, 367, 504, 675, 1075
Tsp45I	GTSAC	1 cut(s)	1061
TspDTI	ATGAA	5 cut(s)	91, 520, 749, 918, 965
TspGWI	ACGGA	3 cut(s)	317, 648, 774
TspRI	CASTG	4 cut(s)	485, 808, 920, 1009
VneI	GTGCAC	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	850
VspI	ATTAAT	1 cut(s)	1083
XapI	RAATTY	1 cut(s)	750
XceI	RCATGY	2 cut(s)	61, 723
XspI	CTAG	1 cut(s)	1105
Zsp2I	ATGCAT	2 cut(s)	331, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.