Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001843

Physical Location & Seq

Genomic Coordinates Reverse (-)

8575430 .. 8578251

Gene Structure 2822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG104900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCTTGTGGCGCTGCAGGAATTCGAAAAGAAACTGGCAAGCAATTGGTATCTAATTACTTCTTTGTCACTTAATCACTTACTGACTCTGTTTTTAGGTTTTCGGCAATTTCATGTGTCCAAACATTTGAGCAAATACAAGAGGTTATTAAATTTGCAGGGTGCAAGAATCAGCATGGGCAGACAGTTAAAGAACCACAAGATTATAATCTCACGCATTGTCGACATACTTGGGAAGAAGAGCTTAGCCCAAAAGCACTTAAACAAGTGCTTATATTCAGTTGGAATGGGCAGCAATGACTACATCAACAATTACTTCGTGCCTCAGTATTACCACACCAGCAAAAAATTTACCACTGAGCAATATGCTGAAGTTCTCATCAACCAATATTCTTGGGAAATACTGAAGTTGTACAAGTATGGAGCAAGGAAGGTGGCTTTGGTTGGATTGGGACTAATAGGCTGCACCCCAAGTGCAATTTCTTCCTTTGGCACAAATGGGTCAGCATGTGTAGACACATTGAACATTGCAGCGCAACTGTTTAACCGAAGGCTTGTATCACTTGTGGACAAGCTCAACAGCAATTTGACAGATGCAAAATTCATCTATATTAACAGCTTTGAAATGGGTTCTGGAGATCCTGCAGCTGCTGGCTTCACAGTTTCGAATGTTGGGTGTTGTGCGGTAAATGAAGTTGGTCAATGTAATGTTGACCATACTCCATGCAAAAACAGGACTGAGTACGTGTTCTGGGACGGATTCCATCCTACTGAAGCCTTGAACCGAATCACTGCAATCAGATCATACAATGCTTTTAACCCTGTAGACACTTATCCAATGGATATTAGTCACCTTGTTCAGCTACAAATTAATAACCCAGCAACTCCAGCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

298

Amino Acids

33.44

Weight (kDa)

9.28

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	46 - 265	7.5e-23	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06620 FvH4_3g06630 FvH4_3g06670 FvH4_3g06670
malus_domestica	MD10G1270700.v1.1
prunus_persica	Prupe.4G071000_v2.0.a1
pyrus_communis	pycom10g22650
rosa_chinensis	RchiOBHm_Chr5g0012471 RchiOBHm_Chr5g0012481 RchiOBHm_Chr5g0012491 RchiOBHm_Chr5g0012521
rosa_laevigata	RLG00000031919 RLG00000031920 RLG00000031921
rosa_multiflora	Rmu_sc0000904.1_g000009 Rmu_sc0001889.1_g000007 Rmu_sc0001889.1_g000008 Rmu_sc0001889.1_g000025 Rmu_sc0001889.1_g000032 Rmu_sc0039272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064170 Rroxscaffold_1G00064190 Rroxscaffold_1G00064200
rosa_rugosa	Rorug05G0001600 Rorug05G0001700 Rorug05G0001700 Rorug05G0001700 Rorug05G0001800 Rorug05G0001900 Rorug05G0002000 Rorug05G0002100
rosa_samantha	Rh5AG095800 Rh5AG095900 Rh5AG096100 Rh5BG092100 Rh5BG092200 Rh5BG092300 Rh5CG104800 Rh5CG104900 Rh5CG105200 Rh5DG091400 Rh5DG091500 Rh5DG091600 Rh5DG091800
rosa_wichuraiana	Rw5G008380 Rw5G008390 Rw5G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AccI	GTMKAC	3 cut(s)	222, 513, 825
AciI	CCGC	1 cut(s)	683
AclWI	GGATC	1 cut(s)	632
AcsI	RAATTY	4 cut(s)	20, 151, 347, 599
AcuI	CTGAAG	3 cut(s)	390, 425, 792
AfaI	GTAC	2 cut(s)	413, 743
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	3 cut(s)	523, 623, 781
AjuI	GAANNNNNNNTTGG	4 cut(s)	422, 454, 463, 495
AluBI	AGCT	6 cut(s)	243, 574, 618, 647, 862, 890
AluI	AGCT	6 cut(s)	243, 574, 618, 647, 862, 890
AlwI	GGATC	1 cut(s)	632
AlwNI	CAGNNNCTG	1 cut(s)	650
ApeKI	GCWGC	6 cut(s)	13, 291, 462, 530, 644, 647
ApoI	RAATTY	4 cut(s)	20, 151, 347, 599
AseI	ATTAAT	1 cut(s)	870
AspLEI	GCGC	2 cut(s)	13, 535
AsuHPI	GGTGA	1 cut(s)	842
AsuII	TTCGAA	2 cut(s)	24, 665
BbvI	GCAGC	5 cut(s)	303, 449, 542, 634, 656
BccI	CCATC	1 cut(s)	771
BfaI	CTAG	1 cut(s)	895
BfmI	CTRYAG	3 cut(s)	14, 642, 822
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	6 cut(s)	14, 292, 463, 531, 645, 648
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	6 cut(s)	15, 293, 464, 532, 646, 649
BmsI	GCATC	1 cut(s)	583
BpmI	CTGGAG	2 cut(s)	654, 870
Bpu1102I	GCTNAGC	1 cut(s)	244
Bpu14I	TTCGAA	2 cut(s)	24, 665
BsaAI	YACGTR	1 cut(s)	745
BsaBI	GATNNNNATC	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	2 cut(s)	301, 525
Bse8I	GATNNNNATC	1 cut(s)	206
BseGI	GGATG	1 cut(s)	763
BseJI	GATNNNNATC	1 cut(s)	206
BseMI	GCAATG	2 cut(s)	301, 525
BseMII	CTCAG	3 cut(s)	338, 348, 729
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	5 cut(s)	303, 449, 542, 634, 656
BseYI	CCCAGC	1 cut(s)	877
BsgI	GTGCAG	1 cut(s)	448
BslFI	GGGAC	2 cut(s)	465, 767
BsmFI	GGGAC	2 cut(s)	465, 767
Bsp119I	TTCGAA	2 cut(s)	24, 665
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	637, 800
Bsp1720I	GCTNAGC	1 cut(s)	244
BspACI	CCGC	1 cut(s)	683
BspCNI	CTCAG	3 cut(s)	337, 349, 730
BspMAI	CTGCAG	2 cut(s)	18, 646
BspPI	GGATC	1 cut(s)	632
BspQI	GCTCTTC	1 cut(s)	233
BspT104I	TTCGAA	2 cut(s)	24, 665
BsrDI	GCAATG	2 cut(s)	301, 525
BsrGI	TGTACA	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	637, 800
Bst4CI	ACNGT	3 cut(s)	186, 540, 661
Bst6I	CTCTTC	1 cut(s)	233
BstAUI	TGTACA	1 cut(s)	411
BstBAI	YACGTR	1 cut(s)	745
BstBI	TTCGAA	2 cut(s)	24, 665
BstC8I	GCNNGC	2 cut(s)	40, 652
BstDEI	CTNAG	4 cut(s)	244, 324, 357, 738
BstF5I	GGATG	1 cut(s)	763
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 535
BstKTI	GATC	2 cut(s)	640, 803
BstMBI	GATC	2 cut(s)	637, 800
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 887
BstNSI	RCATGY	1 cut(s)	510
BstSFI	CTRYAG	3 cut(s)	14, 642, 822
BstV1I	GCAGC	5 cut(s)	303, 449, 542, 634, 656
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	763
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	2 cut(s)	354, 789
Cac8I	GCNNGC	2 cut(s)	40, 652
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	2 cut(s)	13, 535
Csp6I	GTAC	2 cut(s)	412, 742
CspCI	CAANNNNNGTGG	2 cut(s)	414, 449
CviAII	CATG	4 cut(s)	113, 175, 507, 723
CviQI	GTAC	2 cut(s)	412, 742
DdeI	CTNAG	4 cut(s)	244, 324, 357, 738
DpnI	GATC	2 cut(s)	639, 802
DpnII	GATC	2 cut(s)	637, 800
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco57I	CTGAAG	3 cut(s)	390, 425, 792
EcoRI	GAATTC	1 cut(s)	20
FaeI	CATG	4 cut(s)	116, 178, 510, 726
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	2 cut(s)	465, 767
FatI	CATG	4 cut(s)	112, 174, 506, 722
FblI	GTMKAC	3 cut(s)	222, 513, 825
Fnu4HI	GCNGC	6 cut(s)	14, 292, 463, 531, 645, 648
FokI	GGATG	1 cut(s)	750
Fsp4HI	GCNGC	6 cut(s)	14, 292, 463, 531, 645, 648
FspBI	CTAG	1 cut(s)	895
GlaI	GCGC	2 cut(s)	12, 534
GluI	GCNGC	6 cut(s)	14, 292, 463, 531, 645, 648
GsaI	CCCAGC	1 cut(s)	881
GsuI	CTGGAG	2 cut(s)	654, 870
HaeII	RGCGCY	1 cut(s)	14
HhaI	GCGC	2 cut(s)	13, 535
Hin1II	CATG	4 cut(s)	116, 178, 510, 726
Hin6I	GCGC	2 cut(s)	11, 533
HinP1I	GCGC	2 cut(s)	11, 533
HincII	GTYRAC	2 cut(s)	223, 712
HindII	GTYRAC	2 cut(s)	223, 712
HinfI	GANTC	4 cut(s)	85, 168, 759, 786
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	5 cut(s)	223, 514, 568, 712, 826
Hpy188I	TCNGA	1 cut(s)	800
Hpy188III	TCNNGA	1 cut(s)	633
Hpy8I	GTNNAC	5 cut(s)	223, 514, 568, 712, 826
HpyAV	CCTTC	2 cut(s)	424, 543
HpyCH4III	ACNGT	3 cut(s)	186, 540, 661
HpyCH4IV	ACGT	1 cut(s)	744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 887
HpyF3I	CTNAG	4 cut(s)	244, 324, 357, 738
HpySE526I	ACGT	1 cut(s)	744
Hsp92II	CATG	4 cut(s)	116, 178, 510, 726
HspAI	GCGC	2 cut(s)	11, 533
Kzo9I	GATC	2 cut(s)	637, 800
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	5 cut(s)	303, 449, 542, 634, 656
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	1 cut(s)	895
MaeII	ACGT	1 cut(s)	744
MaeIII	GTNAC	2 cut(s)	66, 848
MalI	GATC	2 cut(s)	639, 802
MboI	GATC	2 cut(s)	637, 800
MboII	GAAGA	3 cut(s)	247, 250, 474
MfeI	CAATTG	1 cut(s)	43
MflI	RGATCY	1 cut(s)	637
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	2 cut(s)	262, 424
MnlI	CCTC	2 cut(s)	135, 333
MseI	TTAA	8 cut(s)	72, 149, 188, 260, 543, 612, 816, 870
MspA1I	CMGCKG	1 cut(s)	647
MunI	CAATTG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	10, 887
NdeII	GATC	2 cut(s)	637, 800
NlaIII	CATG	4 cut(s)	116, 178, 510, 726
NmuCI	GTSAC	2 cut(s)	66, 848
NspI	RCATGY	1 cut(s)	510
NspV	TTCGAA	2 cut(s)	24, 665
PciSI	GCTCTTC	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	168, 759, 786
PkrI	GCNGC	6 cut(s)	15, 293, 464, 532, 646, 649
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	745
PshBI	ATTAAT	1 cut(s)	870
PsiI	TTATAA	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	877
PstI	CTGCAG	2 cut(s)	18, 646
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	413, 743
RsaNI	GTAC	2 cut(s)	412, 742
SalI	GTCGAC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	8 cut(s)	72, 149, 188, 260, 543, 612, 816, 870
SatI	GCNGC	6 cut(s)	14, 292, 463, 531, 645, 648
Sau3AI	GATC	2 cut(s)	637, 800
SchI	GAGTC	1 cut(s)	79
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	3 cut(s)	14, 642, 822
SfuI	TTCGAA	2 cut(s)	24, 665
SsiI	CCGC	1 cut(s)	683
SspI	AATATT	1 cut(s)	389
SspMI	CTAG	1 cut(s)	895
TaaI	ACNGT	3 cut(s)	186, 540, 661
TaiI	ACGT	1 cut(s)	747
TaqI	TCGA	3 cut(s)	24, 222, 665
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	3 cut(s)	168, 759, 786
Tru1I	TTAA	8 cut(s)	72, 149, 188, 260, 543, 612, 816, 870
Tru9I	TTAA	8 cut(s)	72, 149, 188, 260, 543, 612, 816, 870
TscAI	CASTG	2 cut(s)	361, 796
TseFI	GTSAC	2 cut(s)	66, 848
TseI	GCWGC	6 cut(s)	13, 291, 462, 530, 644, 647
Tsp45I	GTSAC	2 cut(s)	66, 848
TspDTI	ATGAA	3 cut(s)	101, 592, 705
TspGWI	ACGGA	1 cut(s)	771
TspRI	CASTG	2 cut(s)	361, 796
VspI	ATTAAT	1 cut(s)	870
XapI	RAATTY	4 cut(s)	20, 151, 347, 599
XceI	RCATGY	1 cut(s)	510
XmiI	GTMKAC	3 cut(s)	222, 513, 825
XspI	CTAG	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.