FvH4_3g09470

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001466
Physical Location & Seq
Reverse (-)
5512112 .. 5514075
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09470.t1

Sequence Viewer

Length: 1563 bp
ATGGGTAGCCTCGATTTCCACCATGTTCCAGAGAAAACCAACTCTGATCCCCCAATGGCCAACCCTATGGATCCTGAAGAGTTCAGGAGACAAGGTCACATTATGATAGATTTTATTGCAGACTATTACAAGAACATAGAGAAGTACCCGGTTCTAAGCCAAGTCCAACCAGGTTACCTCAAGAAGCTCTTACCGGAGTCTGCGCCATACAACCCTGAGCCGATCGAAACCATCCTCCAAGATGTGCAAGATCATATTGTTCCTGGTATAACACATTGGCAAAGCCCTAGCTACTTTGCCTACTTTCCTTCAAGTGGCAGCATTGCCGGGTTTCTAGGCGAAATGCTTAGCACTGGGTTCAATGTGGTTGGATTCAACTGGATGTCATCGCCTGCTGCAACTGAGCTAGAAAGTATAGTCATGGATTGGCTTGGAGACATGCTGCAGCTTCCCAAGTCCTTCCTGTTCTCTGGAAATGGTGGTGGTGTGTTACAAGGGACGACTTGTGAGGCCATTGTTTGCACCATGGCTGCTGCTAGAGACCAAATGCTAAGCCGAATTGGTAAAGACAACATCGGGAAGCTAGTTGTATATGGGTCAGATCAGACACATAGTGCGCTTAAAAAGGCCTCCCAAATTGTTGGAATCCATCCAAACAATTTCAGGGCCATTAAGACTACAAAGTCCACAGAATTTGCATTATCACCTGAGTTGCTGAGATCCACAATTTGTAGTGACATAGACAAAGGGCTAGTTCCTTTGTTTTTATGTGCCACGATGGGGACAACTGCAACCACTTCTGTTGATCCATTGAGGGGACTATGTGATGTAGCAAAAGATTACGACTTGTGGGTTCATGTCGATGCAGCATACGCAGGAAGTATCTGCATTTGTCCAGAGTTTCGACATTTCATTGAAGGCGTCGATGGAGCGAATTCATTCAGTTTCAATGCACATAAATGGTTCTTCACAACACTCGATTGTTGCTGCCTTTGGGTTAAGAACCCAACTGCATTGATCAATTCTTTGTCAACGAATCCAGAGTTTTTGAGGAACAAAGCCAGTGATTCAAAGCAAGTGGTGGACTACAAAGACTGGCAAGTAGCACTAAGCCGAAGGTTTCGTGCATTGAAATTATGGCTTGTGCTAAGAAGCTATGGAGTAGCTAATCTCAGAAGCTTTCTCAGAAGCCATGTGAAAATGGCCGAGGTCTTTGAAAAGCTTGTGCGAGAGAACAAATGGTTTGAGGTTGTCGTGCCTAGGAATTTTGCCATGGTCTGTTTTAGGATTTCTCCATCTGCAATTAGGAAAGCTCCAACCGACGATGATGGAATTGATGTTGTGATAAACGAGGTCAATTCCAAGCTGCTGGAGGCGATGAATACATCAGGTAGTGTGTATATGACTCATGCTGTGGTCGGAGGCATGTATGTGTTGCGGTGCGCAATTGGTGCAACTATGACCGAGGAAAAGCACGTACTCATGGCATGGAAGGTAGTGCAAGACCAGGCAGAAGCCATACTAAGCACGACTAGCTTGGAGGATCTTAGGAGTTTTAATTAG

Protein Analysis

521

Amino Acids

57.9

Weight (kDa)

5.93

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 57 - 430 2e-114 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 682
Acc16I TGCGCA 1 cut(s) 1444
AciI CCGC 1 cut(s) 1438
AclWI GGATC 6 cut(s) 41, 65, 78, 714, 800, 1551
AcoI YGGCCR 2 cut(s) 57, 1203
AcsI RAATTY 3 cut(s) 692, 934, 1264
AcuI CTGAAG 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 921
AdeI CACNNNGTG 1 cut(s) 614
AfaI GTAC 2 cut(s) 146, 1479
AfiI CCNNNNNNNGG 3 cut(s) 314, 780, 815
AgsI TTSAA 8 cut(s) 312, 361, 376, 917, 949, 1071, 1132, 1217
AjnI CCWGG 3 cut(s) 169, 262, 1506
Alw26I GTCTC 3 cut(s) 82, 429, 534
AlwI GGATC 6 cut(s) 41, 65, 78, 714, 800, 1551
AoxI GGCC 5 cut(s) 57, 510, 627, 666, 1203
ApeKI GCWGC 9 cut(s) 318, 395, 442, 445, 530, 533, 866, 987, 1366
ApoI RAATTY 3 cut(s) 692, 934, 1264
Asp700I GAANNNNTTC 1 cut(s) 938
AspA2I CCTAGG 1 cut(s) 1259
AspLEI GCGC 3 cut(s) 205, 619, 1445
AspS9I GGNCC 1 cut(s) 666
AsuC2I CCSGG 2 cut(s) 149, 328
AsuHPI GGTGA 1 cut(s) 696
AvrII CCTAGG 1 cut(s) 1259
BalI TGGCCA 1 cut(s) 59
BamHI GGATCC 1 cut(s) 70
BbvI GCAGC 9 cut(s) 330, 382, 429, 457, 517, 520, 878, 974, 1353
BccI CCATC 6 cut(s) 239, 657, 772, 920, 1303, 1322
BciT130I CCWGG 3 cut(s) 171, 264, 1508
BclI TGATCA 1 cut(s) 1017
BcnI CCSGG 2 cut(s) 149, 328
BcoDI GTCTC 3 cut(s) 82, 429, 534
BfaI CTAG 8 cut(s) 288, 335, 407, 537, 584, 752, 1260, 1533
BfmI CTRYAG 1 cut(s) 443
BisI GCNGC 9 cut(s) 319, 396, 443, 446, 531, 534, 867, 988, 1367
BlnI CCTAGG 1 cut(s) 1259
BlpI GCTNAGC 2 cut(s) 347, 551
BlsI GCNGC 9 cut(s) 320, 397, 444, 447, 532, 535, 868, 989, 1368
Bme1390I CCNGG 5 cut(s) 149, 171, 264, 328, 1508
BmgT120I GGNCC 1 cut(s) 666
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 5 cut(s) 149, 171, 264, 328, 1508
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 853
BmuI ACTGGG 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 1391
Bpu10I CCTNAGC 1 cut(s) 216
Bpu1102I GCTNAGC 2 cut(s) 347, 551
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 2 cut(s) 149, 328
BsaAI YACGTR 1 cut(s) 1477
BsaHI GRCGYC 1 cut(s) 921
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 5 cut(s) 525, 1206, 1259, 1272, 1464
BsaWI WCCGGW 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 780, 815
Bse1I ACTGG 4 cut(s) 358, 383, 1062, 1100
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 3 cut(s) 171, 264, 1508
BseDI CCNNGG 5 cut(s) 525, 1206, 1259, 1272, 1464
BseGI GGATG 3 cut(s) 231, 387, 649
BseLI CCNNNNNNNGG 3 cut(s) 314, 780, 815
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 6 cut(s) 207, 393, 699, 707, 1186, 1198
BseNI ACTGG 4 cut(s) 358, 383, 1062, 1100
BseXI GCAGC 9 cut(s) 330, 382, 429, 457, 517, 520, 878, 974, 1353
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 5 cut(s) 59, 512, 629, 668, 1205
BsiEI CGRYCG 1 cut(s) 225
BsiSI CCGG 3 cut(s) 149, 194, 327
BslFI GGGAC 3 cut(s) 511, 796, 831
BslI CCNNNNNNNGG 3 cut(s) 314, 780, 815
BsmAI GTCTC 3 cut(s) 82, 429, 534
BsmFI GGGAC 3 cut(s) 511, 796, 831
BsnI GGCC 5 cut(s) 59, 512, 629, 668, 1205
Bso31I GGTCTC 1 cut(s) 534
Bsp143I GATC 9 cut(s) 46, 70, 222, 250, 601, 719, 805, 1017, 1543
Bsp1720I GCTNAGC 2 cut(s) 347, 551
Bsp19I CCATGG 2 cut(s) 525, 1272
BspACI CCGC 1 cut(s) 1438
BspANI GGCC 5 cut(s) 59, 512, 629, 668, 1205
BspCNI CTCAG 6 cut(s) 208, 394, 700, 708, 1185, 1197
BspLI GGNNCC 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 447
BspPI GGATC 6 cut(s) 41, 65, 78, 714, 800, 1551
BspTNI GGTCTC 1 cut(s) 534
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 4 cut(s) 358, 383, 1062, 1100
BssECI CCNNGG 5 cut(s) 525, 1206, 1259, 1272, 1464
BssMI GATC 9 cut(s) 46, 70, 222, 250, 601, 719, 805, 1017, 1543
BssNI GRCGYC 1 cut(s) 921
BssT1I CCWWGG 3 cut(s) 525, 1259, 1272
Bst2UI CCWGG 3 cut(s) 171, 264, 1508
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 921
BstAPI GCANNNNNTGC 1 cut(s) 1451
BstBAI YACGTR 1 cut(s) 1477
BstC8I GCNNGC 1 cut(s) 393
BstDSI CCRYGG 2 cut(s) 525, 1272
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 3 cut(s) 231, 387, 649
BstHHI GCGC 3 cut(s) 205, 619, 1445
BstKTI GATC 9 cut(s) 49, 73, 225, 253, 604, 722, 808, 1020, 1546
BstMAI GTCTC 3 cut(s) 82, 429, 534
BstMBI GATC 9 cut(s) 46, 70, 222, 250, 601, 719, 805, 1017, 1543
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 3 cut(s) 872, 1451, 1533
BstNI CCWGG 3 cut(s) 171, 264, 1508
BstNSI RCATGY 2 cut(s) 442, 1429
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 5 cut(s) 147, 169, 262, 326, 1506
BstSFI CTRYAG 1 cut(s) 443
BstV1I GCAGC 9 cut(s) 330, 382, 429, 457, 517, 520, 878, 974, 1353
BstX2I RGATCY 3 cut(s) 70, 719, 1543
BstXI CCANNNNNNTGG 3 cut(s) 67, 641, 1369
BstYI RGATCY 3 cut(s) 70, 719, 1543
BsuRI GGCC 5 cut(s) 59, 512, 629, 668, 1205
BtgI CCRYGG 2 cut(s) 525, 1272
BtgZI GCGATG 2 cut(s) 372, 1391
BtsCI GGATG 3 cut(s) 231, 387, 649
BtsIMutI CAGTG 2 cut(s) 351, 1069
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 3 cut(s) 205, 619, 1445
Cfr13I GGNCC 1 cut(s) 666
CseI GACGC 1 cut(s) 910
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 2 cut(s) 145, 1478
CspCI CAANNNNNGTGG 6 cut(s) 676, 711, 784, 819, 1059, 1094
CviQI GTAC 2 cut(s) 145, 1478
DpnI GATC 9 cut(s) 48, 72, 224, 252, 603, 721, 807, 1019, 1545
DpnII GATC 9 cut(s) 46, 70, 222, 250, 601, 719, 805, 1017, 1543
DraIII CACNNNGTG 1 cut(s) 614
DrdI GACNNNNNNGTC 1 cut(s) 682
DseDI GACNNNNNNGTC 1 cut(s) 682
EaeI YGGCCR 2 cut(s) 57, 1203
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 3 cut(s) 525, 1259, 1272
Eco147I AGGCCT 1 cut(s) 629
Eco31I GGTCTC 1 cut(s) 534
Eco57I CTGAAG 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 934
EcoRII CCWGG 3 cut(s) 169, 262, 1506
EcoT14I CCWWGG 3 cut(s) 525, 1259, 1272
ErhI CCWWGG 3 cut(s) 525, 1259, 1272
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 3 cut(s) 511, 796, 831
FbaI TGATCA 1 cut(s) 1017
Fnu4HI GCNGC 9 cut(s) 319, 396, 443, 446, 531, 534, 867, 988, 1367
FokI GGATG 3 cut(s) 218, 394, 636
Fsp4HI GCNGC 9 cut(s) 319, 396, 443, 446, 531, 534, 867, 988, 1367
FspBI CTAG 8 cut(s) 288, 335, 407, 537, 584, 752, 1260, 1533
FspI TGCGCA 1 cut(s) 1444
GlaI GCGC 3 cut(s) 204, 618, 1444
GluI GCNGC 9 cut(s) 319, 396, 443, 446, 531, 534, 867, 988, 1367
GsuI CTGGAG 1 cut(s) 1391
HaeIII GGCC 5 cut(s) 59, 512, 629, 668, 1205
HapII CCGG 3 cut(s) 149, 194, 327
HgaI GACGC 1 cut(s) 910
HhaI GCGC 3 cut(s) 205, 619, 1445
Hin1I GRCGYC 1 cut(s) 921
Hin6I GCGC 3 cut(s) 203, 617, 1443
HinP1I GCGC 3 cut(s) 203, 617, 1443
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HindIII AAGCTT 2 cut(s) 1177, 1220
HinfI GANTC 6 cut(s) 197, 372, 645, 1036, 1067, 1405
HpaII CCGG 3 cut(s) 149, 194, 327
HphI GGTGA 1 cut(s) 696
Hpy166II GTNNAC 3 cut(s) 687, 1032, 1084
Hpy188I TCNGA 6 cut(s) 46, 601, 606, 1175, 1187, 1421
Hpy188III TCNNGA 8 cut(s) 29, 74, 85, 181, 471, 577, 896, 1040
Hpy8I GTNNAC 3 cut(s) 687, 1032, 1084
Hpy99I CGWCG 2 cut(s) 926, 1325
HpyAV CCTTC 5 cut(s) 318, 469, 911, 1110, 1486
HpyCH4IV ACGT 1 cut(s) 1476
HpyF10VI GCNNNNNNNGC 3 cut(s) 872, 1451, 1533
HpySE526I ACGT 1 cut(s) 1476
Hsp92I GRCGYC 1 cut(s) 921
HspAI GCGC 3 cut(s) 203, 617, 1443
Ksp22I TGATCA 1 cut(s) 1017
Kzo9I GATC 9 cut(s) 46, 70, 222, 250, 601, 719, 805, 1017, 1543
LmnI GCTCC 2 cut(s) 929, 1318
Lsp1109I GCAGC 9 cut(s) 330, 382, 429, 457, 517, 520, 878, 974, 1353
LweI GCATC 1 cut(s) 853
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 8 cut(s) 288, 335, 407, 537, 584, 752, 1260, 1533
MaeII ACGT 1 cut(s) 1476
MaeIII GTNAC 4 cut(s) 95, 173, 489, 734
MalI GATC 9 cut(s) 48, 72, 224, 252, 603, 721, 807, 1019, 1545
MboI GATC 9 cut(s) 46, 70, 222, 250, 601, 719, 805, 1017, 1543
MboII GAAGA 2 cut(s) 89, 958
MfeI CAATTG 1 cut(s) 1446
MflI RGATCY 3 cut(s) 70, 719, 1543
MlsI TGGCCA 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 2 cut(s) 206, 1399
MmeI TCCRAC 5 cut(s) 190, 349, 622, 1340, 1399
Mox20I TGGCCA 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 938
MscI TGGCCA 1 cut(s) 59
MseI TTAA 4 cut(s) 621, 672, 999, 1557
MslI CAYNNNNRTG 3 cut(s) 861, 958, 1430
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 3 cut(s) 149, 194, 327
MspR9I CCNGG 5 cut(s) 149, 171, 264, 328, 1508
MunI CAATTG 1 cut(s) 1446
MvaI CCWGG 3 cut(s) 171, 264, 1508
MwoI GCNNNNNNNGC 3 cut(s) 872, 1451, 1533
NciI CCSGG 2 cut(s) 149, 328
NcoI CCATGG 2 cut(s) 525, 1272
NdeII GATC 9 cut(s) 46, 70, 222, 250, 601, 719, 805, 1017, 1543
NlaIV GGNNCC 1 cut(s) 72
NmeAIII GCCGAG 1 cut(s) 1231
NmuCI GTSAC 2 cut(s) 95, 734
NsbI TGCGCA 1 cut(s) 1444
NspI RCATGY 2 cut(s) 442, 1429
PceI AGGCCT 1 cut(s) 629
PdmI GAANNNNTTC 1 cut(s) 938
PfeI GAWTC 4 cut(s) 372, 645, 1036, 1067
PflFI GACNNNGTC 1 cut(s) 93
PkrI GCNGC 9 cut(s) 320, 397, 444, 447, 532, 535, 868, 989, 1368
Ple19I CGATCG 1 cut(s) 225
PleI GAGTC 2 cut(s) 205, 1399
PpsI GAGTC 2 cut(s) 205, 1399
Ppu21I YACGTR 1 cut(s) 1477
Psp6I CCWGG 3 cut(s) 169, 262, 1506
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 3 cut(s) 169, 262, 1506
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 666
PstI CTGCAG 1 cut(s) 447
PsuI RGATCY 3 cut(s) 70, 719, 1543
PsyI GACNNNGTC 1 cut(s) 93
PvuI CGATCG 1 cut(s) 225
RsaI GTAC 2 cut(s) 146, 1479
RsaNI GTAC 2 cut(s) 145, 1478
RseI CAYNNNNRTG 3 cut(s) 861, 958, 1430
SaqAI TTAA 4 cut(s) 621, 672, 999, 1557
SatI GCNGC 9 cut(s) 319, 396, 443, 446, 531, 534, 867, 988, 1367
Sau3AI GATC 9 cut(s) 46, 70, 222, 250, 601, 719, 805, 1017, 1543
Sau96I GGNCC 1 cut(s) 666
SchI GAGTC 2 cut(s) 206, 1399
ScrFI CCNGG 5 cut(s) 149, 171, 264, 328, 1508
SexAI ACCWGGT 1 cut(s) 169
SfaNI GCATC 1 cut(s) 853
SfcI CTRYAG 1 cut(s) 443
SmiMI CAYNNNNRTG 3 cut(s) 861, 958, 1430
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SseBI AGGCCT 1 cut(s) 629
SsiI CCGC 1 cut(s) 1438
SspMI CTAG 8 cut(s) 288, 335, 407, 537, 584, 752, 1260, 1533
StuI AGGCCT 1 cut(s) 629
StyD4I CCNGG 5 cut(s) 147, 169, 262, 326, 1506
StyI CCWWGG 3 cut(s) 525, 1259, 1272
TaiI ACGT 1 cut(s) 1479
TaqI TCGA 6 cut(s) 12, 225, 861, 904, 924, 978
TaqII GACCGA 1 cut(s) 1478
TfiI GAWTC 4 cut(s) 372, 645, 1036, 1067
Tru1I TTAA 4 cut(s) 621, 672, 999, 1557
Tru9I TTAA 4 cut(s) 621, 672, 999, 1557
TscAI CASTG 2 cut(s) 358, 1069
TseFI GTSAC 2 cut(s) 95, 734
TseI GCWGC 9 cut(s) 318, 395, 442, 445, 530, 533, 866, 987, 1366
Tsp45I GTSAC 2 cut(s) 95, 734
TspDTI ATGAA 4 cut(s) 845, 901, 927, 1394
TspRI CASTG 2 cut(s) 358, 1069
Tth111I GACNNNGTC 1 cut(s) 93
XapI RAATTY 3 cut(s) 692, 934, 1264
XceI RCATGY 2 cut(s) 442, 1429
XmaJI CCTAGG 1 cut(s) 1259
XmnI GAANNNNTTC 1 cut(s) 938
XspI CTAG 8 cut(s) 288, 335, 407, 537, 584, 752, 1260, 1533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.