RLG00000032164

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001466
Physical Location & Seq
Reverse (-)
11709735 .. 11711270
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032164

Sequence Viewer

Length: 1536 bp
ATGGGTAGCCTCGAGTTCCACCATGGTCCAAAAGAAAACAACTCTGATCCCCCCATGGCCAACCCTCTGGATCCTGAAGAATTCAGGAGGCAAGGCCACATAATGATAGATTTTATTGCAGACTATTACAAGAACATAGAGAAGTACCCGGTTCTAAGCCAAGTTCAACCAGGTTATCTCAAAAACCGCCTGCCGGAGTCTGCGCCATACAACCCCGAGCCGATTGAAACTATCCTCCAAGATGTGCGAGATCATATTGTTCCTGGTATAACACATTGGCAAAGCCCTAGCTACTTTGCCTACTTTCCTTCAAGTGGTAGCATCGCAGGGTTTCTCGGCGAAATGCTTAGCACTGGATTCAATGTGGTTGGATTCAACTGGATGTCATCGCCTGCTGCAACTGAGCTAGAAAGCATAGTCATGGATTGGCTTGGAAACATGCTTCAACTTCCCAAGTCTTTCCTTTTCTCTGGCAACGGTGGTGGTGTGTTACAAGGGACTACTTGTGAGGCCATTGTTTGCACCATGGCTGCTGCTAGAGACCAAGTGCTAAGCCGAATCGGTAAAGACTACATTGGGAGGCTAGTTGTATATGGGTCAGATCAAACACATAGTGCACTTAAAAAAGCCTCCCAAATTGTTGGAATCCATCCAAACAATTTCAGGGCCATCAACACAACACAATCCACAAATTTTGCACTATCACCTGAGTTGCTGAGATCCACAATTTGTTCTGACATAGAAAAAGGGTTAGTTCCTTTGTTTCTATGTGCCACGATGGGAACAACTGCAACCACTTCTGTTGATCCATTGGGGGGACTGTGTGATGTAGCAAAAGATTATGGCATATGGGTTCATGTCGATGCAGCATACGCAGGAAGTGTCTGCATTTGTCCAGAGTTTAGGCATTTCATTGAAGGCGTTGAGGGAGCAAATTCATTCAGTTTCAATGCACATAAATGGTTCTTCACAACTCTAGATTGTTGTTGCCTTTGGGTTAAGAACCCAACTGCATTGATCGATTCCTTGTCAACGAATCCAGAGTTTTTAAGGAACAAAGCCAGTGATTCAAAGCAAGTGGTGGACTACAAAGACTGGCAAATAGCACTCAGCCGAAGGTTCCGCGCATTGAAATTATGGCTCGTGCTAAGAAGCTATGGAGTAGATAATCTCAGAAACTTTCTCAGAAGCCATGTGAAAATGGCAGTGGTCTTTGAAAGGCTTGTGCGAGAGAACAAATGGTTTGAGGTTGTTGTGCCTAGGAATTTCGCCATGGTCTGTTTTAGAATTTCTCCATCAGCAATCAGCAAAGTTCCAGGTGATGATGATGGAAGTGCTATGATAAACGAGGTCAATTGCAAGCTATTGGAGGCGATCAATGCATCAGGTGACGTATACATGACTCATGCTGTGGTTGGAGGCATGTGTGTGTTACGGTGCGCAATTGGGGCAACTATGACCGAGGAAAAGCACATACACAGGGCCTGGAAGGTAGTGCAAGACCATGCAGATGCCATCCTGAGCACGTATCAATAG

Protein Analysis

512

Amino Acids

56.78

Weight (kDa)

6.11

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 57 - 430 3.9e-113 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1441
AccI GTMKAC 1 cut(s) 1395
AccII CGCG 1 cut(s) 1125
AciI CCGC 2 cut(s) 187, 1123
AclWI GGATC 5 cut(s) 41, 65, 78, 714, 800
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 5 cut(s) 80, 691, 934, 1264, 1287
AcuI CTGAAG 1 cut(s) 96
AdeI CACNNNGTG 1 cut(s) 614
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 3 cut(s) 193, 314, 815
AjnI CCWGG 4 cut(s) 169, 262, 1315, 1484
AluBI AGCT 4 cut(s) 291, 406, 1155, 1363
AluI AGCT 4 cut(s) 291, 406, 1155, 1363
Alw21I GWGCWC 2 cut(s) 619, 1526
Alw26I GTCTC 1 cut(s) 534
Alw44I GTGCAC 1 cut(s) 615
AlwI GGATC 5 cut(s) 41, 65, 78, 714, 800
AlwNI CAGNNNCTG 1 cut(s) 1485
Ama87I CYCGRG 2 cut(s) 11, 215
AoxI GGCC 5 cut(s) 57, 94, 510, 666, 1482
ApaLI GTGCAC 1 cut(s) 615
ApeKI GCWGC 4 cut(s) 395, 530, 533, 866
ApoI RAATTY 5 cut(s) 80, 691, 934, 1264, 1287
AspA2I CCTAGG 1 cut(s) 1259
AspLEI GCGC 3 cut(s) 205, 1127, 1442
AspS9I GGNCC 3 cut(s) 26, 666, 1482
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 696, 1331, 1400
AvaI CYCGRG 2 cut(s) 11, 215
AvaII GGWCC 1 cut(s) 26
AvrII CCTAGG 1 cut(s) 1259
BaeGI GKGCMC 1 cut(s) 619
BalI TGGCCA 1 cut(s) 59
BamHI GGATCC 1 cut(s) 70
BauI CACGAG 1 cut(s) 1142
Bbv12I GWGCWC 2 cut(s) 619, 1526
BbvI GCAGC 4 cut(s) 382, 517, 520, 878
BccI CCATC 6 cut(s) 657, 677, 772, 1303, 1322, 1523
BciT130I CCWGG 4 cut(s) 171, 264, 1317, 1486
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
BisI GCNGC 4 cut(s) 396, 531, 534, 867
BlnI CCTAGG 1 cut(s) 1259
BlpI GCTNAGC 2 cut(s) 347, 551
BlsI GCNGC 4 cut(s) 397, 532, 535, 868
Bme1390I CCNGG 5 cut(s) 149, 171, 264, 1317, 1486
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 2 cut(s) 11, 215
BmgT120I GGNCC 3 cut(s) 26, 666, 1482
BmiI GGNNCC 2 cut(s) 72, 1121
BmrFI CCNGG 5 cut(s) 149, 171, 264, 1317, 1486
BmsI GCATC 4 cut(s) 330, 853, 1391, 1501
Bpu10I CCTNAGC 1 cut(s) 1520
Bpu1102I GCTNAGC 2 cut(s) 347, 551
BpuMI CCSGG 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 1020
BsaAI YACGTR 1 cut(s) 1527
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 6 cut(s) 22, 54, 525, 1259, 1272, 1461
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 314, 815
Bse1I ACTGG 4 cut(s) 358, 383, 1062, 1100
BseBI CCWGG 4 cut(s) 171, 264, 1317, 1486
BseCI ATCGAT 1 cut(s) 1020
BseDI CCNNGG 6 cut(s) 22, 54, 525, 1259, 1272, 1461
BseGI GGATG 3 cut(s) 387, 649, 1515
BseLI CCNNNNNNNGG 3 cut(s) 193, 314, 815
BseMII CTCAG 7 cut(s) 393, 699, 707, 1123, 1186, 1198, 1511
BseNI ACTGG 4 cut(s) 358, 383, 1062, 1100
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 4 cut(s) 382, 517, 520, 878
Bsh1236I CGCG 1 cut(s) 1125
BshFI GGCC 5 cut(s) 59, 96, 512, 668, 1484
BshVI ATCGAT 1 cut(s) 1020
BsiHKAI GWGCWC 2 cut(s) 619, 1526
BsiHKCI CYCGRG 2 cut(s) 11, 215
BsiSI CCGG 2 cut(s) 149, 194
BslFI GGGAC 2 cut(s) 511, 831
BslI CCNNNNNNNGG 3 cut(s) 193, 314, 815
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 2 cut(s) 511, 831
BsnI GGCC 5 cut(s) 59, 96, 512, 668, 1484
Bso31I GGTCTC 1 cut(s) 534
BsoBI CYCGRG 2 cut(s) 11, 215
Bsp1286I GDGCHC 2 cut(s) 619, 1526
Bsp143I GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1374
Bsp1720I GCTNAGC 2 cut(s) 347, 551
Bsp19I CCATGG 4 cut(s) 22, 54, 525, 1272
BspACI CCGC 2 cut(s) 187, 1123
BspANI GGCC 5 cut(s) 59, 96, 512, 668, 1484
BspCNI CTCAG 7 cut(s) 394, 700, 708, 1122, 1185, 1197, 1512
BspDI ATCGAT 1 cut(s) 1020
BspFNI CGCG 1 cut(s) 1125
BspLI GGNNCC 2 cut(s) 72, 1121
BspPI GGATC 5 cut(s) 41, 65, 78, 714, 800
BspTNI GGTCTC 1 cut(s) 534
BsrI ACTGG 4 cut(s) 358, 383, 1062, 1100
BssECI CCNNGG 6 cut(s) 22, 54, 525, 1259, 1272, 1461
BssMI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1374
BssNAI GTATAC 1 cut(s) 1396
BssSI CACGAG 1 cut(s) 1142
BssT1I CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
Bst1107I GTATAC 1 cut(s) 1396
Bst2BI CACGAG 1 cut(s) 1142
Bst2UI CCWGG 4 cut(s) 171, 264, 1317, 1486
Bst4CI ACNGT 3 cut(s) 479, 822, 1437
BstBAI YACGTR 1 cut(s) 1527
BstC8I GCNNGC 3 cut(s) 191, 393, 1361
BstDSI CCRYGG 4 cut(s) 22, 54, 525, 1272
BstF5I GGATG 3 cut(s) 387, 649, 1515
BstFNI CGCG 1 cut(s) 1125
BstHHI GCGC 3 cut(s) 205, 1127, 1442
BstKTI GATC 8 cut(s) 49, 73, 253, 604, 722, 808, 1020, 1377
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1374
BstMWI GCNNNNNNNGC 3 cut(s) 872, 1379, 1448
BstNI CCWGG 4 cut(s) 171, 264, 1317, 1486
BstNSI RCATGY 2 cut(s) 442, 1426
BstSCI CCNGG 5 cut(s) 147, 169, 262, 1315, 1484
BstSLI GKGCMC 1 cut(s) 619
BstUI CGCG 1 cut(s) 1125
BstV1I GCAGC 4 cut(s) 382, 517, 520, 878
BstX2I RGATCY 2 cut(s) 70, 719
BstXI CCANNNNNNTGG 2 cut(s) 67, 641
BstYI RGATCY 2 cut(s) 70, 719
BstZ17I GTATAC 1 cut(s) 1396
Bsu15I ATCGAT 1 cut(s) 1020
BsuRI GGCC 5 cut(s) 59, 96, 512, 668, 1484
BsuTUI ATCGAT 1 cut(s) 1020
BtgI CCRYGG 4 cut(s) 22, 54, 525, 1272
BtgZI GCGATG 2 cut(s) 307, 372
BtsCI GGATG 3 cut(s) 387, 649, 1515
BtsI GCAGTG 1 cut(s) 1212
BtsIMutI CAGTG 3 cut(s) 351, 1069, 1212
Cac8I GCNNGC 3 cut(s) 191, 393, 1361
CaiI CAGNNNCTG 1 cut(s) 1485
CfoI GCGC 3 cut(s) 205, 1127, 1442
Cfr13I GGNCC 3 cut(s) 26, 666, 1482
ClaI ATCGAT 1 cut(s) 1020
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 1 cut(s) 145
CspCI CAANNNNNGTGG 8 cut(s) 463, 498, 676, 711, 784, 819, 1059, 1094
CviQI GTAC 1 cut(s) 145
DpnI GATC 8 cut(s) 48, 72, 252, 603, 721, 807, 1019, 1376
DpnII GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1374
DraIII CACNNNGTG 1 cut(s) 614
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
Eco31I GGTCTC 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 96
Eco88I CYCGRG 2 cut(s) 11, 215
EcoO109I RGGNCCY 1 cut(s) 1482
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 4 cut(s) 169, 262, 1315, 1484
EcoT14I CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
EcoT22I ATGCAT 1 cut(s) 1384
ErhI CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
FaqI GGGAC 2 cut(s) 511, 831
FauNDI CATATG 1 cut(s) 848
FblI GTMKAC 1 cut(s) 1395
Fnu4HI GCNGC 4 cut(s) 396, 531, 534, 867
FokI GGATG 3 cut(s) 394, 636, 1502
Fsp4HI GCNGC 4 cut(s) 396, 531, 534, 867
FspBI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
FspI TGCGCA 1 cut(s) 1441
GlaI GCGC 3 cut(s) 204, 1126, 1441
GluI GCNGC 4 cut(s) 396, 531, 534, 867
HaeIII GGCC 5 cut(s) 59, 96, 512, 668, 1484
HapII CCGG 2 cut(s) 149, 194
HhaI GCGC 3 cut(s) 205, 1127, 1442
Hin6I GCGC 3 cut(s) 203, 1125, 1440
HinP1I GCGC 3 cut(s) 203, 1125, 1440
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HinfI GANTC 9 cut(s) 197, 357, 372, 558, 645, 1022, 1036, 1067, 1402
HpaII CCGG 2 cut(s) 149, 194
HphI GGTGA 3 cut(s) 696, 1331, 1400
Hpy166II GTNNAC 4 cut(s) 617, 1032, 1084, 1396
Hpy188I TCNGA 5 cut(s) 46, 601, 736, 1175, 1187
Hpy188III TCNNGA 7 cut(s) 68, 74, 85, 896, 977, 1040, 1519
Hpy8I GTNNAC 4 cut(s) 617, 1032, 1084, 1396
HpyAV CCTTC 4 cut(s) 318, 911, 1110, 1483
HpyCH4III ACNGT 3 cut(s) 479, 822, 1437
HpyCH4IV ACGT 2 cut(s) 1392, 1526
HpyF10VI GCNNNNNNNGC 3 cut(s) 872, 1379, 1448
HpySE526I ACGT 2 cut(s) 1392, 1526
HspAI GCGC 3 cut(s) 203, 1125, 1440
Kzo9I GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1374
LmnI GCTCC 1 cut(s) 929
Lsp1109I GCAGC 4 cut(s) 382, 517, 520, 878
LweI GCATC 4 cut(s) 330, 853, 1391, 1501
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
MaeII ACGT 2 cut(s) 1392, 1526
MaeIII GTNAC 3 cut(s) 489, 1388, 1431
MalI GATC 8 cut(s) 48, 72, 252, 603, 721, 807, 1019, 1376
MboI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1374
MboII GAAGA 2 cut(s) 89, 958
MfeI CAATTG 2 cut(s) 1354, 1443
MflI RGATCY 2 cut(s) 70, 719
MhlI GDGCHC 2 cut(s) 619, 1526
MlsI TGGCCA 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 2 cut(s) 206, 1396
MmeI TCCRAC 3 cut(s) 349, 622, 1396
Mox20I TGGCCA 1 cut(s) 59
Mph1103I ATGCAT 1 cut(s) 1384
MscI TGGCCA 1 cut(s) 59
MseI TTAA 3 cut(s) 621, 999, 1049
MslI CAYNNNNRTG 5 cut(s) 419, 861, 958, 1427, 1509
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 2 cut(s) 149, 194
MspR9I CCNGG 5 cut(s) 149, 171, 264, 1317, 1486
MunI CAATTG 2 cut(s) 1354, 1443
MvaI CCWGG 4 cut(s) 171, 264, 1317, 1486
MvnI CGCG 1 cut(s) 1125
MwoI GCNNNNNNNGC 3 cut(s) 872, 1379, 1448
NciI CCSGG 1 cut(s) 149
NcoI CCATGG 4 cut(s) 22, 54, 525, 1272
NdeI CATATG 1 cut(s) 848
NdeII GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1374
NlaIV GGNNCC 2 cut(s) 72, 1121
NmeAIII GCCGAG 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 1388
NsbI TGCGCA 1 cut(s) 1441
NsiI ATGCAT 1 cut(s) 1384
NspI RCATGY 2 cut(s) 442, 1426
PaeR7I CTCGAG 1 cut(s) 11
PfeI GAWTC 7 cut(s) 357, 372, 558, 645, 1022, 1036, 1067
PkrI GCNGC 4 cut(s) 397, 532, 535, 868
PleI GAGTC 2 cut(s) 205, 1396
PpsI GAGTC 2 cut(s) 205, 1396
Ppu21I YACGTR 1 cut(s) 1527
Psp6I CCWGG 4 cut(s) 169, 262, 1315, 1484
PspGI CCWGG 4 cut(s) 169, 262, 1315, 1484
PspN4I GGNNCC 2 cut(s) 72, 1121
PspPI GGNCC 3 cut(s) 26, 666, 1482
PspXI VCTCGAGB 1 cut(s) 11
PstNI CAGNNNCTG 1 cut(s) 1485
PsuI RGATCY 2 cut(s) 70, 719
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 5 cut(s) 419, 861, 958, 1427, 1509
SaqAI TTAA 3 cut(s) 621, 999, 1049
SatI GCNGC 4 cut(s) 396, 531, 534, 867
Sau3AI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1374
Sau96I GGNCC 3 cut(s) 26, 666, 1482
SchI GAGTC 2 cut(s) 206, 1396
ScrFI CCNGG 5 cut(s) 149, 171, 264, 1317, 1486
SduI GDGCHC 2 cut(s) 619, 1526
SexAI ACCWGGT 1 cut(s) 169
SfaNI GCATC 4 cut(s) 330, 853, 1391, 1501
Sfr274I CTCGAG 1 cut(s) 11
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 11
SmiMI CAYNNNNRTG 5 cut(s) 419, 861, 958, 1427, 1509
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SsiI CCGC 2 cut(s) 187, 1123
SspMI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
StyD4I CCNGG 5 cut(s) 147, 169, 262, 1315, 1484
StyI CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
TaaI ACNGT 3 cut(s) 479, 822, 1437
TaiI ACGT 2 cut(s) 1395, 1529
TaqI TCGA 3 cut(s) 12, 861, 1020
TaqII GACCGA 1 cut(s) 1475
TfiI GAWTC 7 cut(s) 357, 372, 558, 645, 1022, 1036, 1067
Tru1I TTAA 3 cut(s) 621, 999, 1049
Tru9I TTAA 3 cut(s) 621, 999, 1049
TscAI CASTG 3 cut(s) 358, 1069, 1212
TseFI GTSAC 1 cut(s) 1388
TseI GCWGC 4 cut(s) 395, 530, 533, 866
Tsp45I GTSAC 1 cut(s) 1388
TspDTI ATGAA 3 cut(s) 845, 901, 927
TspRI CASTG 3 cut(s) 358, 1069, 1212
VneI GTGCAC 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 5 cut(s) 80, 691, 934, 1264, 1287
XbaI TCTAGA 1 cut(s) 976
XceI RCATGY 2 cut(s) 442, 1426
XhoI CTCGAG 1 cut(s) 11
XmaJI CCTAGG 1 cut(s) 1259
XmiI GTMKAC 1 cut(s) 1395
XspI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
Zsp2I ATGCAT 1 cut(s) 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.