Rorug01G0048400

Tyrosine dopa decarboxylase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
7954999 .. 7959509
4511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0048400.1

Sequence Viewer

Length: 4323 bp
ATGGCTGTTGGAGAGGCTTTTCTCTCTGCCTTTCTTCAAGTTCTGTTTGATAGATTGGCTTCCCATGAATTTCTAGGCCTACTATGTGGCAGGAAATACGATGATCTGCTGGATAAGTTGAAGATCACCTTGCTGACGGTTACTACGTTGCTTAATGATGCTGAGGAGAAGCAGTTTTACAATACTGCAGTGAAGAAGTGGCTGCACATGACTAAAGATGCTCTATATGATGCAGAGGATATACTCGATGAGTTGGCTAGTGAAGCTTTGGCATTTAAGATGGCAGCTGAATCTCATACCAGCACGAATAAGGTATGGAATTGGAACCCTATTTCCACCCCTCGCAGTCCATCTACTAGAGGGATAGAATCTAAATTGATGAAGATAATTGAGAGGTTAGAGTTAATTGCCAAATATAAAAATGTTCTAGGCTTGAAAGACAATGTTGGAGGGAGGTTGTTTGGCTTTAGGCTTAGATCACCAACAACATCGTTGGTGGATGAATCATGTATTTATGGCAGGGGCTGTGATAAAGAGAAGATAATTCAACTTCTTGTACGGGATGGGCCAACAAGTAGTAACGTTGGTGTAGTTCCTATAGTGGGCATGGGTGGTATTGGAAAAACGACTCTTGCGCAACTGGTTTACAATGATAACATAGTGGACATGCATTTTGATTTGAAAGTTTGGATATATGTATCTAGTCACTTTGATGCTGTGAGGGTGACAAAAACAATGCTTGGGTCAGTCCATTCAGAAAAAGTTGATCTTGATGACTTAAATTTGCTTCAAGTTTGTTTGAAAGAAAAATTGGCTGGGAAGAGGTTCTTGCTTGTTTTAGATGATGTTTGGAACAAAAGAAATAATGATTGGGATCTCTTGTGGTTCCCTTTGGAAGTAGGGAAAAGTGGAAGTAAGATAATAGTCACAACGCAGAATAGTGATGTTGCCTCAAGCATGGGTACCGTACCAGCTTATCATTTGAGCGGTTTATCATTTGAAGATTGTTGGTTATTGTTCATGAGTCAAGCATCGGAGAACAGAATCATTGATGTTAATTTTCAGGCCATTGGCAAGGAGATAGTGAGAAGGTGTGATGGTTTGCCCTTGGCAGTGAAAAGATTTGGAATCCTGTTGCGGTCTAGAACTGAAGAAGATGAATGGAAAGACATTTTAAATAGGCCAATATGGGATCTACCAGATGATGAAAGTAACATTCTTCAAACTTTAAGCTTAAGCTATCATCACCTTCCTGCACATTTGAAGCCATGTTTCGCATATTGTTCCATTTTCCCAAGAGAATTTGAACTGGACAAGGATTCACTTGTTTTATTATGGATGGCTGAAGGTTTTCTTCAGCAACCTAAAGGAAGCAAAAAATTGGAAGCTGTGGGTGGTGAGTATTTTCATGAGCTAGTATCCAGATCATTCTTTCAACAGTCTGTTCACAACAGATCAGGGTACATAATGCACAACCTTGTGCAAGAGCTAGCTCAGTTTGTTTCTGGAGAATTCTGTTTCAGATTGGAGGACAAAGTTGAGGACAGTGATGAACACAAAGCTTTTGAGAAGGCTCGTCATTCTTCCTATGTTCGTCGTCAACGAGAGGTAACAACAAGGTTTGAGTCCTTCAGCAGACTTGAGCACTTACGCACCTTCCTTCCATTGGATTCAACAGATGGAATTGGAGTCAGCTATTTGGCTAAGAAAGTCCCTAATGACCTGCTGCCCAAGTTACGATGTTTACGAGTGCTATCTTTCAGTGCATGTCGTATTACTGAACTGCCAGATTCACTTGGCAATTTAAAACATCTACGCTATTTGAACCTTTCTCGCACTGCAATAGAAGGGTTGCCTGATAAAATGACTATGCTTTGCAATTTACAGACATTGATATTAACAGAATGTCGCTCTCTCACAGAGTTGCCAGTACGGATGGGGAACCTAACAAGCCTACGCCATCTTCATATCAATGGAAGCAGACTAAAAGAGATGCCACCGCAAATGTGTAGATTGAAGAATCTTCAAACCTTGTCAAGTTTCATGGTTGGTAGAGACAGAGGATGGGGAATTAGGGACTTGAAGGACATGGTGCAACTTAAAGGCTCGCTTCTCATTTCTGGATTGCAGAATGTTGATAATTTTGTAGATGCAATGGAGGTTAATCTGAAGGGAAAACAAGGACTTGAGCACTTGGTGTTCCAATGGAGTGAAATTTTTTATCATTCACTCAATGATAACATGCCAAAAATTCACAAAAACCTAGAAGATCTCAGCACCAGAGGCCGTAGTTTTACAAGATTTCCTAGTTTCAAGGAAACCATGGAGGCTTGTGCATTGGAACCGACAAACAGTGTGGATATTTCAAGAAATGAAAGAGTTGAAATGGTTGTACTTGAGATGCTGCAACCTCATAAAAATATAAAAGGAGTCACAGTAAAAGATTATGGAGGCACAAGGTTTCCTAGTTGGATTGCATCCCCATTGTTCTCCAATATCATATTTTTGAAGGTTACTGATTGCAGGAAGTGTATAGAACTACCAGCACTTGGGCAACTACCCTCACTAAAAGATCTCATTCTTGAAGGAATGGAGGGCCTAAAAAGTATAGGTGCTGAGTTTTATGGGAATTGTTACTCTCCTGTCCTTCCATTCCCGTCGTTGGAAACTCTAAAGTTGGACCGGATGATAAACTGGAAGGACTGGTCGTCTTCTGGGGTTGAAGGTAGGGAAGACTTTTGTCGCCTGCAGAAGATTGAAATTCTAAACTGTCCCAAGCTTAGAAGTTTTTCACAACACTTTCCTGCCTTGAGAGAAATGAGAATCAAGTGGTGTGAAGAACTGATTGCTCTTCCATGCCTTTCAAATACAGATAATGCCTCAGGACAAGGCGTAGAATTTCCTTGCCTACTGGAACTTTCTATAGGGACATGTCCCAAGTTGAATAGATTGCCTAGTCTCTTTCCTTCTCTGAAAGTACTCAAGATAAATGGATGTCAAGAACTAGAAGAACTGCCCAAGCTCCCTTCCATCCATGAGTTGGAGCTTAAAAATTGCAATGAAGGGGTACTACAAAGTATAGTTGGACTTGCCTCGCTTACCTACTTGCATTTGAATCAAATTCCCAATCTGACATGTCTACTTGAAGGGTTTCTGCAACAATTGACAGATCTTGAAGAGTTGAAAATTGCAGATCTAAGCGAGATCATCACTTTGTCTAATGATATTGGATTGCAAAACCTCTTGCACCTCAAGCACTTGGAAATTTCAGAATGTCCATTCTTAAAAGAGCTACCACAATGCTTGTACAAACTCTCCTCTCTTAAGGAGTTTAGAGTCTGGAGATGTCCCTCGCTTGTATCATTTCCAGACACAGGCTTTCCTTCCACACTTAGAGGCCTTGAGATCAAGGGTTGCGAGGCTCTGCAGTTCCTACCAGAGTGGAAGATGCATGGTAACAAGTGGTCCTCTCCGTTTGAGTATTTGGTAATTGAAGATTGTTCTTCTCTGAAGTCTTTACCAGGAGGAAAGCTTCCTAGTACACTTAAACACATTGAAATCCAAAACTGCATAAATTTGGATTCCCTCTCAAATGACATGATTCAAAATAGCACTTGTCTTGAATTCCTTAACATTTCTGGGTGTCATTCTGTCATGTCCTTTGCAGAAGGTACTTTTGGGCTCCCTGCAGTCACATCTGGCATGGTGATGAACCTTAAACATCTCATCATCAACAACTGCACCAAACTCAAGTTGATACCTGAAGGTCTTCACAATCTTATCCATCTCAACAACTTAGAAATTGCCGAGTGTCCACTTCTCGAGGCTATTGCAGAATTTGGCCTGCCAACCTCCATGCTGCAGTCAATCAAAATCTCCAAATGCCAAAGCCTCAAGTCCCTGCCAAATCGTATGTACAGCCTCACATGTCTTCAAGAACTCTGTCTAGAAGGTTGCTCCAATCTTGTGTCATTTCCAGAGGGTGGCTTGCCTACCAATCTATTGTCACTTTCGATCTTGGATTGCGAGAAACTCCTACCAACATTTGAGTGGGGGTTGCATGGGCTCACATGTCTCACCAACCTCACCTTTGGCGGTTGTGAAGCTCTGGTGTCGTTCCCAGAGGACTGGTTGTTGCCTACAACTTTATCCTCTCTTCAACTTCAGCGATTGCCAAATCTTGAATCCCTTCCGAAGAGACTGAATGATCTCACCTCTCTGGATAGTCTGGAGCTATCAGAATGTGACAAACTTCAAACCTTTTCTGAAGAAGAGCAACCAAAGATGCTTCAGAATTTTGAAATTTTGGGATTTCCTCTTTAA

Protein Analysis

1440

Amino Acids

162.82

Weight (kDa)

5.89

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 7 - 93 5.4e-16 Rx N-terminal domain
NB-ARC PF00931 178 - 347 1.4e-35 NB-ARC domain
WHD_DRP PF23559 430 - 498 6.4e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 576 - 781 2.5e-21 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 691 - 757 1.9e-09 R13L1/DRL21 LRRs
LRR_R13L1-DRL21 PF25019 784 - 864 2e-19 R13L1/DRL21 LRRs
LRR_14 PF23598 979 - 1149 9.7e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 636
Acc36I ACCTGC 1 cut(s) 1731
Acc65I GGTACC 1 cut(s) 962
AccB1I GGYRCC 1 cut(s) 962
AccB7I CCANNNNNTGG 3 cut(s) 2549, 3040, 3983
AccBSI CCGCTC 1 cut(s) 987
AccI GTMKAC 1 cut(s) 3139
AciI CCGC 4 cut(s) 987, 1138, 2000, 4095
AclI AACGTT 1 cut(s) 582
AclWI GGATC 2 cut(s) 882, 1200
AdeI CACNNNGTG 1 cut(s) 2197
AfiI CCNNNNNNNGG 7 cut(s) 602, 1666, 2549, 2662, 3040, 3374, 3983
AflII CTTAAG 2 cut(s) 1234, 3323
AflIII ACRYGT 4 cut(s) 2930, 3134, 3926, 4070
AhdI GACNNNNNGTC 1 cut(s) 2707
AjnI CCWGG 1 cut(s) 3520
AjuI GAANNNNNNNTTGG 6 cut(s) 794, 826, 853, 885, 3660, 3692
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
Alw21I GWGCWC 2 cut(s) 1647, 2193
Alw26I GTCTC 4 cut(s) 2049, 2963, 4079, 4192
AlwI GGATC 2 cut(s) 882, 1200
AlwNI CAGNNNCTG 1 cut(s) 525
Ama87I CYCGRG 1 cut(s) 3821
AoxI GGCC 8 cut(s) 76, 566, 1065, 1181, 2284, 2596, 3397, 3841
ApeKI GCWGC 5 cut(s) 202, 284, 1726, 2404, 3859
ArsI GACNNNNNNTTYG 2 cut(s) 656, 688
Asp700I GAANNNNTTC 6 cut(s) 824, 1350, 2788, 3150, 3768, 4188
Asp718I GGTACC 1 cut(s) 962
AspLEI GCGC 1 cut(s) 637
AspS9I GGNCC 4 cut(s) 566, 2596, 2680, 3465
AsuHPI GGTGA 9 cut(s) 118, 471, 736, 1238, 1409, 3718, 4069, 4078, 4204
AsuNHI GCTAGC 1 cut(s) 1489
AvaI CYCGRG 1 cut(s) 3821
AvaII GGWCC 2 cut(s) 2680, 3465
AxyI CCTNAGG 1 cut(s) 2881
BanI GGYRCC 1 cut(s) 962
BanII GRGCYC 2 cut(s) 3684, 4068
BarI GAAGNNNNNNTAC 4 cut(s) 161, 193, 3054, 3086
BbsI GAAGAC 4 cut(s) 2703, 2739, 3761, 3923
Bbv12I GWGCWC 2 cut(s) 1647, 2193
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 5 cut(s) 189, 296, 1713, 2391, 3846
BceAI ACGGC 1 cut(s) 2271
BcgI CGANNNNNNTGC 2 cut(s) 3812, 3846
BciT130I CCWGG 1 cut(s) 3522
BciVI GTATCC 1 cut(s) 1429
BcoDI GTCTC 4 cut(s) 2049, 2963, 4079, 4192
BfmI CTRYAG 7 cut(s) 186, 597, 2747, 2922, 3425, 3687, 3860
BfrI CTTAAG 2 cut(s) 1234, 3323
BfuAI ACCTGC 1 cut(s) 1731
BfuI GTATCC 1 cut(s) 1429
BglII AGATCT 4 cut(s) 2269, 2572, 3169, 3193
BisI GCNGC 5 cut(s) 203, 285, 1727, 2405, 3860
BlsI GCNGC 5 cut(s) 204, 286, 1728, 2406, 3861
BmcAI AGTACT 1 cut(s) 2979
Bme1390I CCNGG 1 cut(s) 3522
Bme18I GGWCC 2 cut(s) 2680, 3465
BmeRI GACNNNNNGTC 1 cut(s) 2707
BmeT110I CYCGRG 1 cut(s) 3821
BmgT120I GGNCC 4 cut(s) 566, 2596, 2680, 3465
BmiI GGNNCC 6 cut(s) 326, 887, 964, 1943, 2343, 3683
BmrFI CCNGG 1 cut(s) 3522
BmtI GCTAGC 1 cut(s) 1493
BoxI GACNNNNGTC 1 cut(s) 2739
BpiI GAAGAC 4 cut(s) 2703, 2739, 3761, 3923
BpmI CTGGAG 3 cut(s) 1527, 3361, 4250
Bpu10I CCTNAGC 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 873
BsaJI CCNNGG 2 cut(s) 1107, 2322
BsaWI WCCGGW 1 cut(s) 2682
BsaXI ACNNNNNCTCC 6 cut(s) 158, 188, 2421, 2451, 3299, 3329
Bsc4I CCNNNNNNNGG 7 cut(s) 602, 1666, 2549, 2662, 3040, 3374, 3983
Bse1I ACTGG 7 cut(s) 645, 1314, 1928, 2699, 2708, 2916, 4133
Bse21I CCTNAGG 1 cut(s) 2881
Bse3DI GCAATG 2 cut(s) 2160, 3064
Bse8I GATNNNNATC 1 cut(s) 873
BseBI CCWGG 1 cut(s) 3522
BseDI CCNNGG 2 cut(s) 1107, 2322
BseGI GGATG 9 cut(s) 505, 568, 1344, 1941, 2069, 2477, 2691, 2999, 3030
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 7 cut(s) 602, 1666, 2549, 2662, 3040, 3374, 3983
BseMI GCAATG 2 cut(s) 2160, 3064
BseMII CTCAG 5 cut(s) 153, 1508, 2287, 2607, 2895
BseNI ACTGG 7 cut(s) 645, 1314, 1928, 2699, 2708, 2916, 4133
BseRI GAGGAG 2 cut(s) 179, 3307
BseXI GCAGC 5 cut(s) 189, 296, 1713, 2391, 3846
BseYI CCCAGC 1 cut(s) 815
BsgI GTGCAG 3 cut(s) 188, 1239, 3724
BshFI GGCC 8 cut(s) 78, 568, 1067, 1183, 2286, 2598, 3399, 3843
BshNI GGYRCC 1 cut(s) 962
BsiHKAI GWGCWC 2 cut(s) 1647, 2193
BsiHKCI CYCGRG 1 cut(s) 3821
BsiSI CCGG 1 cut(s) 2683
BslFI GGGAC 7 cut(s) 1697, 2090, 2757, 2919, 2941, 3333, 3883
BslI CCNNNNNNNGG 7 cut(s) 602, 1666, 2549, 2662, 3040, 3374, 3983
BsmAI GTCTC 4 cut(s) 2049, 2963, 4079, 4192
BsmFI GGGAC 7 cut(s) 1697, 2090, 2757, 2919, 2941, 3333, 3883
BsnI GGCC 8 cut(s) 78, 568, 1067, 1183, 2286, 2598, 3399, 3843
BsoBI CYCGRG 1 cut(s) 3821
Bsp1286I GDGCHC 4 cut(s) 1647, 2193, 3684, 4068
Bsp1407I TGTACA 2 cut(s) 3306, 3915
Bsp19I CCATGG 1 cut(s) 2322
BspACI CCGC 4 cut(s) 987, 1138, 2000, 4095
BspANI GGCC 8 cut(s) 78, 568, 1067, 1183, 2286, 2598, 3399, 3843
BspCNI CTCAG 5 cut(s) 154, 1507, 2286, 2608, 2894
BspHI TCATGA 2 cut(s) 1020, 1408
BspLI GGNNCC 6 cut(s) 326, 887, 964, 1943, 2343, 3683
BspMAI CTGCAG 5 cut(s) 190, 2751, 3429, 3691, 3864
BspMI ACCTGC 1 cut(s) 1731
BspOI GCTAGC 1 cut(s) 1493
BspPI GGATC 2 cut(s) 882, 1200
BspQI GCTCTTC 2 cut(s) 2856, 4266
BspT107I GGYRCC 1 cut(s) 962
BspTI CTTAAG 2 cut(s) 1234, 3323
BsrBI CCGCTC 1 cut(s) 987
BsrDI GCAATG 2 cut(s) 2160, 3064
BsrGI TGTACA 2 cut(s) 3306, 3915
BsrI ACTGG 7 cut(s) 645, 1314, 1928, 2699, 2708, 2916, 4133
BssECI CCNNGG 2 cut(s) 1107, 2322
BssT1I CCWWGG 2 cut(s) 1107, 2322
Bst2UI CCWGG 1 cut(s) 3522
Bst4CI ACNGT 7 cut(s) 139, 967, 1440, 1547, 2354, 2437, 2771
Bst6I CTCTTC 6 cut(s) 815, 2856, 3171, 4161, 4190, 4266
BstAFI CTTAAG 2 cut(s) 1234, 3323
BstAUI TGTACA 2 cut(s) 3306, 3915
BstC8I GCNNGC 5 cut(s) 1491, 2108, 2747, 3845, 3989
BstDSI CCRYGG 1 cut(s) 2322
BstF5I GGATG 9 cut(s) 505, 568, 1344, 1941, 2069, 2477, 2691, 2999, 3030
BstHHI GCGC 1 cut(s) 637
BstMAI GTCTC 4 cut(s) 2049, 2963, 4079, 4192
BstMWI GCNNNNNNNGC 3 cut(s) 263, 2283, 3253
BstNI CCWGG 1 cut(s) 3522
BstNSI RCATGY 7 cut(s) 670, 1770, 2245, 2934, 3138, 3930, 4074
BstPAI GACNNNNGTC 1 cut(s) 2739
BstSCI CCNGG 1 cut(s) 3520
BstSFI CTRYAG 7 cut(s) 186, 597, 2747, 2922, 3425, 3687, 3860
BstV1I GCAGC 5 cut(s) 189, 296, 1713, 2391, 3846
BstV2I GAAGAC 4 cut(s) 2703, 2739, 3761, 3923
BstX2I RGATCY 6 cut(s) 874, 1192, 2269, 2572, 3169, 3193
BstXI CCANNNNNNTGG 1 cut(s) 4128
BstYI RGATCY 6 cut(s) 874, 1192, 2269, 2572, 3169, 3193
Bsu36I CCTNAGG 1 cut(s) 2881
BsuI GTATCC 1 cut(s) 1429
BsuRI GGCC 8 cut(s) 78, 568, 1067, 1183, 2286, 2598, 3399, 3843
BtgI CCRYGG 1 cut(s) 2322
BtsCI GGATG 9 cut(s) 505, 568, 1344, 1941, 2069, 2477, 2691, 2999, 3030
BtsI GCAGTG 3 cut(s) 195, 1119, 1836
BtsIMutI CAGTG 6 cut(s) 195, 1119, 1552, 1768, 1836, 2359
BveI ACCTGC 1 cut(s) 1731
Cac8I GCNNGC 5 cut(s) 1491, 2108, 2747, 3845, 3989
CaiI CAGNNNCTG 1 cut(s) 525
CciI TCATGA 2 cut(s) 1020, 1408
CfoI GCGC 1 cut(s) 637
Cfr13I GGNCC 4 cut(s) 566, 2596, 2680, 3465
CspCI CAANNNNNGTGG 4 cut(s) 2337, 2372, 3285, 3320
DraI TTTAAA 2 cut(s) 1176, 1806
DraIII CACNNNGTG 1 cut(s) 2197
DriI GACNNNNNGTC 1 cut(s) 2707
Eam1104I CTCTTC 6 cut(s) 815, 2856, 3171, 4161, 4190, 4266
Eam1105I GACNNNNNGTC 1 cut(s) 2707
EarI CTCTTC 6 cut(s) 815, 2856, 3171, 4161, 4190, 4266
Eco130I CCWWGG 2 cut(s) 1107, 2322
Eco147I AGGCCT 2 cut(s) 78, 3399
Eco24I GRGCYC 2 cut(s) 3684, 4068
Eco47I GGWCC 2 cut(s) 2680, 3465
Eco81I CCTNAGG 1 cut(s) 2881
Eco88I CYCGRG 1 cut(s) 3821
EcoO109I RGGNCCY 1 cut(s) 2596
EcoRI GAATTC 2 cut(s) 1511, 3623
EcoRII CCWGG 1 cut(s) 3520
EcoT14I CCWWGG 2 cut(s) 1107, 2322
EcoT22I ATGCAT 2 cut(s) 672, 3453
EcoT38I GRGCYC 2 cut(s) 3684, 4068
ErhI CCWWGG 2 cut(s) 1107, 2322
FaqI GGGAC 7 cut(s) 1697, 2090, 2757, 2919, 2941, 3333, 3883
FblI GTMKAC 1 cut(s) 3139
Fnu4HI GCNGC 5 cut(s) 203, 285, 1727, 2405, 3860
FokI GGATG 9 cut(s) 512, 575, 1351, 1948, 2076, 2464, 2698, 3006, 3017
FriOI GRGCYC 2 cut(s) 3684, 4068
Fsp4HI GCNGC 5 cut(s) 203, 285, 1727, 2405, 3860
FspI TGCGCA 1 cut(s) 636
GlaI GCGC 1 cut(s) 636
GluI GCNGC 5 cut(s) 203, 285, 1727, 2405, 3860
GsaI CCCAGC 1 cut(s) 819
GsuI CTGGAG 3 cut(s) 1527, 3361, 4250
HaeIII GGCC 8 cut(s) 78, 568, 1067, 1183, 2286, 2598, 3399, 3843
HapII CCGG 1 cut(s) 2683
HhaI GCGC 1 cut(s) 637
Hin6I GCGC 1 cut(s) 635
HinP1I GCGC 1 cut(s) 635
HincII GTYRAC 1 cut(s) 1601
HindII GTYRAC 1 cut(s) 1601
HindIII AAGCTT 5 cut(s) 264, 1231, 1560, 2777, 3530
HpaII CCGG 1 cut(s) 2683
HphI GGTGA 9 cut(s) 118, 471, 736, 1238, 1409, 3718, 4069, 4078, 4204
Hpy166II GTNNAC 8 cut(s) 646, 664, 1447, 1601, 1745, 3140, 3542, 3815
Hpy8I GTNNAC 8 cut(s) 646, 664, 1447, 1601, 1745, 3140, 3542, 3815
Hpy99I CGWCG 2 cut(s) 1599, 2662
HpyCH4III ACNGT 7 cut(s) 139, 967, 1440, 1547, 2354, 2437, 2771
HpyCH4IV ACGT 2 cut(s) 146, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 2283, 3253
HpySE526I ACGT 2 cut(s) 146, 582
HspAI GCGC 1 cut(s) 635
KpnI GGTACC 1 cut(s) 966
LguI GCTCTTC 2 cut(s) 2856, 4266
LmnI GCTCC 5 cut(s) 3027, 3043, 3687, 3962, 4231
Lsp1109I GCAGC 5 cut(s) 189, 296, 1713, 2391, 3846
MaeII ACGT 2 cut(s) 146, 582
MbiI CCGCTC 1 cut(s) 987
MfeI CAATTG 1 cut(s) 3161
MflI RGATCY 6 cut(s) 874, 1192, 2269, 2572, 3169, 3193
MhlI GDGCHC 4 cut(s) 1647, 2193, 3684, 4068
MlyI GAGTC 6 cut(s) 622, 1033, 1634, 1698, 2439, 3345
MmeI TCCRAC 6 cut(s) 427, 2450, 2643, 2658, 3021, 3064
Mph1103I ATGCAT 2 cut(s) 672, 3453
MroXI GAANNNNTTC 6 cut(s) 824, 1350, 2788, 3150, 3768, 4188
MslI CAYNNNNRTG 4 cut(s) 711, 1971, 3707, 4048
MspA1I CMGCKG 1 cut(s) 287
MspCI CTTAAG 2 cut(s) 1234, 3323
MspI CCGG 1 cut(s) 2683
MspR9I CCNGG 1 cut(s) 3522
MunI CAATTG 1 cut(s) 3161
MvaI CCWGG 1 cut(s) 3522
MwoI GCNNNNNNNGC 3 cut(s) 263, 2283, 3253
NcoI CCATGG 1 cut(s) 2322
NheI GCTAGC 1 cut(s) 1489
NlaIV GGNNCC 6 cut(s) 326, 887, 964, 1943, 2343, 3683
NmeAIII GCCGAG 1 cut(s) 3832
NmuCI GTSAC 7 cut(s) 704, 724, 925, 2431, 3691, 4005, 4244
NsbI TGCGCA 1 cut(s) 636
NsiI ATGCAT 2 cut(s) 672, 3453
NspI RCATGY 7 cut(s) 670, 1770, 2245, 2934, 3138, 3930, 4074
PaeR7I CTCGAG 1 cut(s) 3821
PagI TCATGA 2 cut(s) 1020, 1408
PceI AGGCCT 2 cut(s) 78, 3399
PciI ACATGT 4 cut(s) 2930, 3134, 3926, 4070
PciSI GCTCTTC 2 cut(s) 2856, 4266
PcsI WCGNNNNNNNCGW 3 cut(s) 143, 1600, 1744
PdmI GAANNNNTTC 6 cut(s) 824, 1350, 2788, 3150, 3768, 4188
PflMI CCANNNNNTGG 3 cut(s) 2549, 3040, 3983
PkrI GCNGC 5 cut(s) 204, 286, 1728, 2406, 3861
PleI GAGTC 6 cut(s) 622, 1032, 1633, 1697, 2438, 3344
PpsI GAGTC 6 cut(s) 622, 1032, 1633, 1697, 2438, 3344
PscI ACATGT 4 cut(s) 2930, 3134, 3926, 4070
PshAI GACNNNNGTC 1 cut(s) 2739
Psp1406I AACGTT 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 3520
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 1 cut(s) 3520
PspN4I GGNNCC 6 cut(s) 326, 887, 964, 1943, 2343, 3683
PspPI GGNCC 4 cut(s) 566, 2596, 2680, 3465
PstI CTGCAG 5 cut(s) 190, 2751, 3429, 3691, 3864
PstNI CAGNNNCTG 1 cut(s) 525
PsuI RGATCY 6 cut(s) 874, 1192, 2269, 2572, 3169, 3193
PvuII CAGCTG 1 cut(s) 287
RseI CAYNNNNRTG 4 cut(s) 711, 1971, 3707, 4048
SapI GCTCTTC 2 cut(s) 2856, 4266
SatI GCNGC 5 cut(s) 203, 285, 1727, 2405, 3860
Sau96I GGNCC 4 cut(s) 566, 2596, 2680, 3465
ScaI AGTACT 1 cut(s) 2979
SchI GAGTC 6 cut(s) 622, 1033, 1634, 1698, 2439, 3345
ScrFI CCNGG 1 cut(s) 3522
SduI GDGCHC 4 cut(s) 1647, 2193, 3684, 4068
SfcI CTRYAG 7 cut(s) 186, 597, 2747, 2922, 3425, 3687, 3860
Sfr274I CTCGAG 1 cut(s) 3821
SinI GGWCC 2 cut(s) 2680, 3465
SlaI CTCGAG 1 cut(s) 3821
SmiMI CAYNNNNRTG 4 cut(s) 711, 1971, 3707, 4048
SseBI AGGCCT 2 cut(s) 78, 3399
SsiI CCGC 4 cut(s) 987, 1138, 2000, 4095
StuI AGGCCT 2 cut(s) 78, 3399
StyD4I CCNGG 1 cut(s) 3520
StyI CCWWGG 2 cut(s) 1107, 2322
TaaI ACNGT 7 cut(s) 139, 967, 1440, 1547, 2354, 2437, 2771
TaiI ACGT 2 cut(s) 149, 585
TaqI TCGA 3 cut(s) 246, 3822, 4013
TatI WGTACW 5 cut(s) 2392, 2977, 3306, 3539, 3915
TscAI CASTG 6 cut(s) 195, 1119, 1552, 1768, 1843, 2359
TseFI GTSAC 7 cut(s) 704, 724, 925, 2431, 3691, 4005, 4244
TseI GCWGC 5 cut(s) 202, 284, 1726, 2404, 3859
Tsp45I GTSAC 7 cut(s) 704, 724, 925, 2431, 3691, 4005, 4244
TspGWI ACGGA 2 cut(s) 1948, 3462
TspRI CASTG 6 cut(s) 195, 1119, 1552, 1768, 1843, 2359
Van91I CCANNNNNTGG 3 cut(s) 2549, 3040, 3983
Vha464I CTTAAG 2 cut(s) 1234, 3323
VpaK11BI GGWCC 2 cut(s) 2680, 3465
XbaI TCTAGA 2 cut(s) 1142, 3946
XceI RCATGY 7 cut(s) 670, 1770, 2245, 2934, 3138, 3930, 4074
XcmI CCANNNNNNNNNTGG 2 cut(s) 3037, 4047
XhoI CTCGAG 1 cut(s) 3821
XmiI GTMKAC 1 cut(s) 3139
XmnI GAANNNNTTC 6 cut(s) 824, 1350, 2788, 3150, 3768, 4188
ZrmI AGTACT 1 cut(s) 2979
Zsp2I ATGCAT 2 cut(s) 672, 3453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.