Rw6G003240

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001466
Physical Location & Seq
Reverse (-)
5191865 .. 5194147
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003240.1

Sequence Viewer

Length: 1476 bp
ATGGGTAGCTTCCCATTCCACAGGGATCTACAAGAGATCGCCTCTTCCCAACTGACCAAAGCCCTAGACCCCGAAGAGTTCAGGAAACAAGGCCATATGGTCATAAACTTCATTGCAGATTACTATCAAAACATAGAGAAATATCCAGTTCTAAGCCGAGTTGAACCAGGGTATTTGAAAAAATGCCTACCAGAGTCAGCCCCATATGACCCTGAACCCATCTCAACCATCCTTAGAGATGTTCAGGATCACATTGTTCCTGGCCTAACACATTGGCAAAGTCCCAATTTCTTTGCATACTTCTCTTCAACTGCTAGCACTGCTGGATTTCTTGGTGAAATACTCACCACTGGATTTAATGTGGTGGGGTTCAACTGGGTTTCATCACCGGCAGCAACCGAGCTCGAAAACATAGTCATGGATTGGTTGGGAGACATGCTTCAGCTTCCCAAGTCTTTCCATTTCTCTGGCAATGGCGGCGGTGTTTTGCATGGGAGTACTTGTGAGGCCATTGTTTGCACAATGGTGGCTGCCAGGGACCAAATGCTACGCCGAATTGGTAGCGAGAATTTGGGAAAGCTTGTAGTGTATGCTACCCAAATTGTTGGAATCAACACGGAGAACTTCCGGGCCATCAAGACTACAAAGTCAACTGGTTTTGCACTATCACCTGAGATGCTAAGATTGACAATAAGTTCCGACCTGGAAAAAGGTCTAGTGCCGCTCTTTCTTTGTGCCACAATGGGCACAACCGCCACCACTGCTATTGATCCATTGGAGGCACTATGTCATGTAGCAAAAGAATACGGCGTGTGGGTTCATGTGGATGCTGCATATGCTGGAAGTGCCTGCATTTGTCCAGAATTTCGGCATTTCATTAACGGCGTAGAGGGCGCAAATTCTTTTAGTTTCAACCCCCATAAGTGGTTATTCACTGGAATGGATTGCTGTTGCCTTTGGGTTAAGATTAGAGTCACCGGAAACGCTGCACCTGCCGGCGACCCGCCCAGTGATTCAAAGCAAGTTGTGGACTACAAAGATTGGCAAATAGCCCTAAGCCGGAGGTTTAGGGCATTGAAGCTGTGGCTTGTGCTAAGAAGCTATGGTGTGGCTAACCTTAGAAACTTTATTCGTATCCATGTCAAAATGGCCAAGACTTTTGAAGGGCTTGTGAGAATGGACAAGAGGTTTGAGATTCTGGTGCCTAGAAACTTCTCCTTGGTCTGCTTCAGAATTTCACCATCGGCCTTGATCAGTAGTAATGAGGATGATGAGATCGGTATGGTAAACGAGGTCAATTGCAAATTGCTGGAGGCCATCAATGCATCAGGTAAAGCATACATGACTCATGCTGTGGTTGGAGGGCTGTACGTGCTTCGTTGCGCGGTTGGTGCAACTCTGACCGAGGAAAAGAACATAGTCGAGGCTTGGAATGTGGTGCAGGACCATGCACAAGCCATCCTCAGCACGTATTGA

Protein Analysis

491

Amino Acids

54.4

Weight (kDa)

6.24

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 56 - 412 2.3e-100 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1000
AasI GACNNNNNNGTC 1 cut(s) 646
Acc36I ACCTGC 1 cut(s) 1000
AccB1I GGYRCC 1 cut(s) 1201
AccBSI CCGCTC 1 cut(s) 724
AccII CGCG 1 cut(s) 1385
AciI CCGC 6 cut(s) 477, 480, 722, 753, 1004, 1385
AclWI GGATC 3 cut(s) 33, 255, 764
AcoI YGGCCR 1 cut(s) 1149
AcsI RAATTY 4 cut(s) 568, 863, 898, 1233
AcuI CTGAAG 2 cut(s) 425, 1213
AfaI GTAC 2 cut(s) 499, 1370
AfiI CCNNNNNNNGG 2 cut(s) 924, 1059
AgsI TTSAA 8 cut(s) 164, 178, 309, 373, 913, 1017, 1078, 1163
AjnI CCWGG 4 cut(s) 166, 259, 533, 702
AleI CACNNNNGTG 1 cut(s) 524
AluBI AGCT 6 cut(s) 9, 403, 445, 580, 1081, 1101
AluI AGCT 6 cut(s) 9, 403, 445, 580, 1081, 1101
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 3 cut(s) 33, 255, 764
AoxI GGCC 7 cut(s) 91, 262, 507, 630, 1149, 1245, 1314
ApeKI GCWGC 4 cut(s) 392, 530, 830, 986
ApoI RAATTY 4 cut(s) 568, 863, 898, 1233
ArsI GACNNNNNNTTYG 4 cut(s) 399, 431, 1172, 1204
AspLEI GCGC 2 cut(s) 896, 1385
AspS9I GGNCC 3 cut(s) 538, 630, 1444
AsuC2I CCSGG 1 cut(s) 629
AsuHPI GGTGA 6 cut(s) 337, 347, 378, 660, 967, 1230
AsuNHI GCTAGC 1 cut(s) 314
AvaII GGWCC 2 cut(s) 538, 1444
BaeGI GKGCMC 1 cut(s) 749
BalI TGGCCA 1 cut(s) 1151
BanI GGYRCC 1 cut(s) 1201
BanII GRGCYC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 405
BbvCI CCTCAGC 1 cut(s) 1463
BbvI GCAGC 4 cut(s) 404, 517, 817, 973
BccI CCATC 6 cut(s) 227, 236, 641, 1249, 1325, 1466
BceAI ACGGC 2 cut(s) 823, 898
BciT130I CCWGG 4 cut(s) 168, 261, 535, 704
BciVI GTATCC 1 cut(s) 1145
BclI TGATCA 1 cut(s) 1251
BcnI CCSGG 1 cut(s) 629
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 4 cut(s) 65, 315, 716, 1206
BfuAI ACCTGC 1 cut(s) 1000
BfuI GTATCC 1 cut(s) 1145
BisI GCNGC 6 cut(s) 393, 478, 531, 722, 831, 987
BlsI GCNGC 6 cut(s) 394, 479, 532, 723, 832, 988
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 5 cut(s) 168, 261, 535, 629, 704
Bme18I GGWCC 2 cut(s) 538, 1444
BmgT120I GGNCC 3 cut(s) 538, 630, 1444
BmiI GGNNCC 2 cut(s) 539, 1203
BmrFI CCNGG 5 cut(s) 168, 261, 535, 629, 704
BmrI ACTGGG 2 cut(s) 385, 1002
BmsI GCATC 3 cut(s) 666, 817, 1334
BmtI GCTAGC 1 cut(s) 318
BmuI ACTGGG 2 cut(s) 385, 1002
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 1331
Bpu10I CCTNAGC 2 cut(s) 1055, 1463
BpuMI CCSGG 1 cut(s) 629
BsaAI YACGTR 2 cut(s) 1372, 1470
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 167, 534, 1218, 1404
BsaWI WCCGGW 1 cut(s) 977
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 924, 1059
Bse118I RCCGGY 2 cut(s) 388, 995
Bse1I ACTGG 6 cut(s) 146, 355, 380, 658, 940, 1008
Bse3DI GCAATG 2 cut(s) 111, 478
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 4 cut(s) 168, 261, 535, 704
BseDI CCNNGG 4 cut(s) 167, 534, 1218, 1404
BseGI GGATG 4 cut(s) 228, 832, 1273, 1458
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 924, 1059
BseMI GCAATG 2 cut(s) 111, 478
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 6 cut(s) 146, 355, 380, 658, 940, 1008
BseSI GKGCMC 1 cut(s) 749
BseXI GCAGC 4 cut(s) 404, 517, 817, 973
BsgI GTGCAG 2 cut(s) 972, 1460
Bsh1236I CGCG 1 cut(s) 1385
BshFI GGCC 7 cut(s) 93, 264, 509, 632, 1151, 1247, 1316
BshNI GGYRCC 1 cut(s) 1201
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 5 cut(s) 389, 628, 978, 996, 1060
BslFI GGGAC 2 cut(s) 267, 551
BslI CCNNNNNNNGG 2 cut(s) 924, 1059
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 2 cut(s) 267, 551
BsnI GGCC 7 cut(s) 93, 264, 509, 632, 1151, 1247, 1316
Bsp1286I GDGCHC 2 cut(s) 405, 749
Bsp143I GATC 6 cut(s) 25, 36, 247, 769, 1251, 1275
BspACI CCGC 6 cut(s) 477, 480, 722, 753, 1004, 1385
BspANI GGCC 7 cut(s) 93, 264, 509, 632, 1151, 1247, 1316
BspCNI CTCAG 2 cut(s) 664, 1476
BspFNI CGCG 1 cut(s) 1385
BspLI GGNNCC 2 cut(s) 539, 1203
BspMI ACCTGC 1 cut(s) 1000
BspOI GCTAGC 1 cut(s) 318
BspPI GGATC 3 cut(s) 33, 255, 764
BspT107I GGYRCC 1 cut(s) 1201
BsrBI CCGCTC 1 cut(s) 724
BsrDI GCAATG 2 cut(s) 111, 478
BsrFI RCCGGY 2 cut(s) 388, 995
BsrI ACTGG 6 cut(s) 146, 355, 380, 658, 940, 1008
BssAI RCCGGY 2 cut(s) 388, 995
BssECI CCNNGG 4 cut(s) 167, 534, 1218, 1404
BssMI GATC 6 cut(s) 25, 36, 247, 769, 1251, 1275
BssT1I CCWWGG 1 cut(s) 1218
Bst2UI CCWGG 4 cut(s) 168, 261, 535, 704
Bst6I CTCTTC 3 cut(s) 49, 69, 310
BstBAI YACGTR 2 cut(s) 1372, 1470
BstC8I GCNNGC 3 cut(s) 316, 850, 997
BstDEI CTNAG 8 cut(s) 152, 233, 672, 680, 1055, 1094, 1118, 1463
BstF5I GGATG 4 cut(s) 228, 832, 1273, 1458
BstFNI CGCG 1 cut(s) 1385
BstHHI GCGC 2 cut(s) 896, 1385
BstKTI GATC 6 cut(s) 28, 39, 250, 772, 1254, 1278
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 6 cut(s) 25, 36, 247, 769, 1251, 1275
BstNI CCWGG 4 cut(s) 168, 261, 535, 704
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 5 cut(s) 166, 259, 533, 627, 702
BstSLI GKGCMC 1 cut(s) 749
BstUI CGCG 1 cut(s) 1385
BstV1I GCAGC 4 cut(s) 404, 517, 817, 973
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 2 cut(s) 467, 605
BstYI RGATCY 1 cut(s) 25
BsuI GTATCC 1 cut(s) 1145
BsuRI GGCC 7 cut(s) 93, 264, 509, 632, 1151, 1247, 1316
BtsCI GGATG 4 cut(s) 228, 832, 1273, 1458
BtsI GCAGTG 2 cut(s) 318, 759
BtsIMutI CAGTG 5 cut(s) 318, 348, 759, 933, 1015
BveI ACCTGC 1 cut(s) 1000
Cac8I GCNNGC 3 cut(s) 316, 850, 997
CfoI GCGC 2 cut(s) 896, 1385
Cfr10I RCCGGY 2 cut(s) 388, 995
Cfr13I GGNCC 3 cut(s) 538, 630, 1444
Csp6I GTAC 2 cut(s) 498, 1369
CspCI CAANNNNNGTGG 2 cut(s) 748, 783
CviAII CATG 9 cut(s) 418, 436, 491, 791, 821, 1139, 1342, 1349, 1448
CviQI GTAC 2 cut(s) 498, 1369
DdeI CTNAG 8 cut(s) 152, 233, 672, 680, 1055, 1094, 1118, 1463
DpnI GATC 6 cut(s) 27, 38, 249, 771, 1253, 1277
DpnII GATC 6 cut(s) 25, 36, 247, 769, 1251, 1275
DrdI GACNNNNNNGTC 1 cut(s) 646
DseDI GACNNNNNNGTC 1 cut(s) 646
EaeI YGGCCR 1 cut(s) 1149
Eam1104I CTCTTC 3 cut(s) 49, 69, 310
EarI CTCTTC 3 cut(s) 49, 69, 310
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 1218
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 538, 1444
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 2 cut(s) 425, 1213
EcoICRI GAGCTC 1 cut(s) 403
EcoRII CCWGG 4 cut(s) 166, 259, 533, 702
EcoT14I CCWWGG 1 cut(s) 1218
EcoT22I ATGCAT 1 cut(s) 1327
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 1218
FaeI CATG 9 cut(s) 421, 439, 494, 794, 824, 1142, 1345, 1352, 1451
FaqI GGGAC 2 cut(s) 267, 551
FatI CATG 9 cut(s) 417, 435, 490, 790, 820, 1138, 1341, 1348, 1447
FauI CCCGC 1 cut(s) 1011
FauNDI CATATG 3 cut(s) 96, 205, 835
FbaI TGATCA 1 cut(s) 1251
Fnu4HI GCNGC 6 cut(s) 393, 478, 531, 722, 831, 987
FokI GGATG 4 cut(s) 215, 839, 1280, 1445
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 6 cut(s) 393, 478, 531, 722, 831, 987
FspBI CTAG 4 cut(s) 65, 315, 716, 1206
GlaI GCGC 2 cut(s) 895, 1384
GluI GCNGC 6 cut(s) 393, 478, 531, 722, 831, 987
GsuI CTGGAG 1 cut(s) 1331
HaeIII GGCC 7 cut(s) 93, 264, 509, 632, 1151, 1247, 1316
HapII CCGG 5 cut(s) 389, 628, 978, 996, 1060
HhaI GCGC 2 cut(s) 896, 1385
Hin1II CATG 9 cut(s) 421, 439, 494, 794, 824, 1142, 1345, 1352, 1451
Hin6I GCGC 2 cut(s) 894, 1383
HinP1I GCGC 2 cut(s) 894, 1383
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 6 cut(s) 194, 609, 972, 1013, 1195, 1345
HpaII CCGG 5 cut(s) 389, 628, 978, 996, 1060
HphI GGTGA 6 cut(s) 337, 347, 378, 660, 967, 1230
Hpy166II GTNNAC 3 cut(s) 651, 1030, 1288
Hpy188I TCNGA 3 cut(s) 700, 1232, 1401
Hpy188III TCNNGA 4 cut(s) 82, 245, 637, 860
Hpy8I GTNNAC 3 cut(s) 651, 1030, 1288
HpyAV CCTTC 1 cut(s) 1157
HpyCH4IV ACGT 2 cut(s) 1371, 1469
HpyF3I CTNAG 8 cut(s) 152, 233, 672, 680, 1055, 1094, 1118, 1463
HpySE526I ACGT 2 cut(s) 1371, 1469
Hsp92II CATG 9 cut(s) 421, 439, 494, 794, 824, 1142, 1345, 1352, 1451
HspAI GCGC 2 cut(s) 894, 1383
KroI GCCGGC 1 cut(s) 995
KroNI GCCGGC 1 cut(s) 997
Ksp22I TGATCA 1 cut(s) 1251
Kzo9I GATC 6 cut(s) 25, 36, 247, 769, 1251, 1275
Lsp1109I GCAGC 4 cut(s) 404, 517, 817, 973
LweI GCATC 3 cut(s) 666, 817, 1334
MaeI CTAG 4 cut(s) 65, 315, 716, 1206
MaeII ACGT 2 cut(s) 1371, 1469
MaeIII GTNAC 1 cut(s) 973
MalI GATC 6 cut(s) 27, 38, 249, 771, 1253, 1277
MbiI CCGCTC 1 cut(s) 724
MboI GATC 6 cut(s) 25, 36, 247, 769, 1251, 1275
MboII GAAGA 3 cut(s) 36, 86, 297
MfeI CAATTG 1 cut(s) 1297
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 405, 749
MlsI TGGCCA 1 cut(s) 1151
MluCI AATT 9 cut(s) 286, 555, 568, 600, 863, 898, 1233, 1297, 1304
MluNI TGGCCA 1 cut(s) 1151
MlyI GAGTC 3 cut(s) 203, 981, 1339
MmeI TCCRAC 3 cut(s) 586, 723, 1339
Mox20I TGGCCA 1 cut(s) 1151
Mph1103I ATGCAT 1 cut(s) 1327
MroNI GCCGGC 1 cut(s) 995
MscI TGGCCA 1 cut(s) 1151
MseI TTAA 3 cut(s) 357, 879, 963
MslI CAYNNNNRTG 4 cut(s) 416, 524, 825, 938
Msp20I TGGCCA 1 cut(s) 1151
MspI CCGG 5 cut(s) 389, 628, 978, 996, 1060
MspR9I CCNGG 5 cut(s) 168, 261, 535, 629, 704
MunI CAATTG 1 cut(s) 1297
MvaI CCWGG 4 cut(s) 168, 261, 535, 704
MvnI CGCG 1 cut(s) 1385
NaeI GCCGGC 1 cut(s) 997
NciI CCSGG 1 cut(s) 629
NdeI CATATG 3 cut(s) 96, 205, 835
NdeII GATC 6 cut(s) 25, 36, 247, 769, 1251, 1275
NgoMIV GCCGGC 1 cut(s) 995
NheI GCTAGC 1 cut(s) 314
NlaIII CATG 9 cut(s) 421, 439, 494, 794, 824, 1142, 1345, 1352, 1451
NlaIV GGNNCC 2 cut(s) 539, 1203
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 973
NsiI ATGCAT 1 cut(s) 1327
NspI RCATGY 1 cut(s) 439
OliI CACNNNNGTG 1 cut(s) 524
PaqCI CACCTGC 1 cut(s) 1000
PdiI GCCGGC 1 cut(s) 997
PfeI GAWTC 3 cut(s) 609, 1013, 1195
PkrI GCNGC 6 cut(s) 394, 479, 532, 723, 832, 988
PleI GAGTC 3 cut(s) 202, 980, 1339
PpsI GAGTC 3 cut(s) 202, 980, 1339
Ppu21I YACGTR 2 cut(s) 1372, 1470
Psp124BI GAGCTC 1 cut(s) 405
Psp6I CCWGG 4 cut(s) 166, 259, 533, 702
PspGI CCWGG 4 cut(s) 166, 259, 533, 702
PspN4I GGNNCC 2 cut(s) 539, 1203
PspPI GGNCC 3 cut(s) 538, 630, 1444
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 2 cut(s) 499, 1370
RsaNI GTAC 2 cut(s) 498, 1369
RseI CAYNNNNRTG 4 cut(s) 416, 524, 825, 938
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 3 cut(s) 357, 879, 963
SatI GCNGC 6 cut(s) 393, 478, 531, 722, 831, 987
Sau3AI GATC 6 cut(s) 25, 36, 247, 769, 1251, 1275
Sau96I GGNCC 3 cut(s) 538, 630, 1444
ScaI AGTACT 1 cut(s) 499
SchI GAGTC 3 cut(s) 203, 981, 1339
ScrFI CCNGG 5 cut(s) 168, 261, 535, 629, 704
SduI GDGCHC 2 cut(s) 405, 749
SfaNI GCATC 3 cut(s) 666, 817, 1334
SinI GGWCC 2 cut(s) 538, 1444
SmiMI CAYNNNNRTG 4 cut(s) 416, 524, 825, 938
Sse9I AATT 9 cut(s) 286, 555, 568, 600, 863, 898, 1233, 1297, 1304
SsiI CCGC 6 cut(s) 477, 480, 722, 753, 1004, 1385
SspMI CTAG 4 cut(s) 65, 315, 716, 1206
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 5 cut(s) 166, 259, 533, 627, 702
StyI CCWWGG 1 cut(s) 1218
TaiI ACGT 2 cut(s) 1374, 1472
TaqI TCGA 2 cut(s) 405, 1422
TaqII GACCGA 1 cut(s) 1418
TasI AATT 9 cut(s) 286, 555, 568, 600, 863, 898, 1233, 1297, 1304
TatI WGTACW 1 cut(s) 497
TauI GCSGC 2 cut(s) 480, 724
TfiI GAWTC 3 cut(s) 609, 1013, 1195
Tru1I TTAA 3 cut(s) 357, 879, 963
Tru9I TTAA 3 cut(s) 357, 879, 963
TscAI CASTG 5 cut(s) 325, 355, 766, 940, 1015
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 4 cut(s) 392, 530, 830, 986
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 4 cut(s) 100, 372, 809, 865
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 5 cut(s) 325, 355, 766, 940, 1015
VpaK11BI GGWCC 2 cut(s) 538, 1444
XapI RAATTY 4 cut(s) 568, 863, 898, 1233
XceI RCATGY 1 cut(s) 439
XspI CTAG 4 cut(s) 65, 315, 716, 1206
ZrmI AGTACT 1 cut(s) 499
Zsp2I ATGCAT 1 cut(s) 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.